BAC Information

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BAC

Clone NameB6Ng01-013A16
Chromosome5 (Build37)
Map Location 146,961,856 - 147,115,393
singlet/doubletdoublet
Overlap geneLOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
Upstream geneZkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449
Downstream geneWasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A16.bB6Ng01-013A16.g
ACCDH847963DH847964
length1,049481
definitionDH847963|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A16, 5' end.DH847964|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,114,352 - 147,115,393)(146,961,856 - 146,962,342)
sequence
gaattctgctggtggctcgctcgctgtggaggtgagtggccctggagcag
tctttcttctttaagacaggtttatttttacgagtgttttgcctgagtgt
gcatgataggccacatgtatgcagtacccatgaaggcctgaagggggcat
ctggggctgcagttaagatgcctgtgatctggcctatggtcctctggaag
agcagtgatcttaagtgctgagccatctctccagccccacagaatggtct
ttcctaacatatttctcaggctcacgtctcaggactgggggagttcgttg
gaaaggagccacatttccatatccacccaagtcctactgagtcaatctct
ggaactagctggcgaagggggaatgtgtaggtggccctcacagccactgg
gcttctaagccactcagtataggagaaaaacaccagaagacaacgtgtaa
gggtcataagaaacaccgtgagagctaaggttgacagaaaccaaacacaa
ccactcaattcagagggttaaggagggacctgtgtgatcaaaggcatgca
gtatgggtgtgaacaggggtgagaagacttggaaatgccactcccagcaa
cccccctttctcttctggtcaggcctaccagtactgattcctcagctcgt
ggactgcgctagattgtttttaaagggatggcttcagatttttgagaaaa
tatctgttagctctaaaaaggaggaaccaagggtaacggagtggaactac
cattaccagaactagccgactataaagctacctgtcccctgtgctacaga
cctagacagctgaccagagtgcacacctcagccctaaagcccatcagttg
tcaccataagtcactgggaagagttattacagaggcatgtttttaaaatt
acaaccaaaagacccttggtgaatttgaaaaatatagttgaccccatacc
attgattttatgaaaaataatttattacataacccccttgtttttaccaa
tgtcatttttttttatcagaatacttggtgtcatccatgtaaaatagtt
ctgctccatcaatagcagcaggtggattccaagaggcacaaaatgaaaag
cctcccaaatcctgcctgtgttgccatccctgtgggaggggttccactct
cctcactgatgtggggggattgcagctaacttgatgagggattgtcctaa
atcagagaattctgtgttaattcagggaccctccaaatgccctgtgggga
acaggaaaaggacaacatgtcaacatgccctgtcctcctcaagctgacta
gggatgcaggcaggggtttgttttggcgcagaggaaacttcagaaaaaga
ggaagcccaaagattgtaaaaggaacccgaggacctggccacgtcaaaat
gaaaatgatgagggaaaaaacaagactcttcctttcaaaatcagcattca
gaaaggcaggcagacactgcagaacctcatgatggcttgacttgtgggga
ctgtgctgggtgtgggtagaggaggaggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147114352_147115393
seq2: B6Ng01-013A16.b_45_1093 (reverse)

seq1  AACTATTTTACATGAATGACA-CAAGTATTCTGAATAAAAAAAAATTGAA  49
      |||||||||||||| |||||| ||||||||||| ||||||||||||   |
seq2  AACTATTTTACATGGATGACACCAAGTATTCTG-ATAAAAAAAAAT--GA  47

seq1  CATTGTTAAAAACAA-GGTGTTATGTAATAAATTTATTTTTCAT-AAATC  97
      ||||| ||||||||| || ||||||||||||| ||||||||||| |||||
seq2  CATTGGTAAAAACAAGGGGGTTATGTAATAAA-TTATTTTTCATAAAATC  96

seq1  AAT-GTATGGTGTCAACTATATTTTTCAAATTCACCAAGGGTCTTTT-GT  145
      ||| |||||| |||||||||||||||||||||||||||||||||||| ||
seq2  AATGGTATGGGGTCAACTATATTTTTCAAATTCACCAAGGGTCTTTTGGT  146

seq1  TGTA--TTTTAAAACATGCCTCTGT-ATAACTCTTCCCAGTGACTTATTG  192
      ||||  ||| ||||||||||||||| ||||||||||||||||||||| ||
seq2  TGTAATTTTAAAAACATGCCTCTGTAATAACTCTTCCCAGTGACTTA-TG  195

seq1  GTGACAACTGAT-GGCTT--AGGCTGAGGTGTGCACTCTGGTCAGCTGTC  239
      |||||||||||| |||||   |||||||||||||||||||||||||||||
seq2  GTGACAACTGATGGGCTTTAGGGCTGAGGTGTGCACTCTGGTCAGCTGTC  245

seq1  TAGGTCTGTAGCACAGGGGACAGGTAGCTTTATAGTCGGCTAGTTCTGGT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGTAGCACAGGGGACAGGTAGCTTTATAGTCGGCTAGTTCTGGT  295

seq1  AATGGTAGTTCCACTCCGTTACCCTTGGTTCCTCCTTTTTAGAGCTAACA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTTCCACTCCGTTACCCTTGGTTCCTCCTTTTTAGAGCTAACA  345

seq1  GATATTTTCTC-AAAATCTGAAGCCATCCCTTTAAAAACAATCTAGCGCA  388
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTCAAAAATCTGAAGCCATCCCTTTAAAAACAATCTAGCGCA  395

seq1  GTCCACGAGCTGAGGAATCAGTACTGGTAGGCCTGACCAGAAGAGAAAGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGAGCTGAGGAATCAGTACTGGTAGGCCTGACCAGAAGAGAAAGG  445

seq1  GGGGTTGCTGGGAGTGGCATTTCCAAGTCTTCTCACCCCTGTTCACACCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCTGGGAGTGGCATTTCCAAGTCTTCTCACCCCTGTTCACACCC  495

seq1  ATACTGCATGCCTTTGATCACACAGGTCCCTCCTTAACCCTCTGAATTGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCATGCCTTTGATCACACAGGTCCCTCCTTAACCCTCTGAATTGA  545

seq1  GTGGTTGTGTTTGGTTTCTGTCAACCTTAGCTCTCACGGTGTTTCTTATG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTGTTTGGTTTCTGTCAACCTTAGCTCTCACGGTGTTTCTTATG  595

seq1  ACCCTTACACGTTGTCTTCTGGTGTTTTTCTCCTATACTGAGTGGCTTAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACACGTTGTCTTCTGGTGTTTTTCTCCTATACTGAGTGGCTTAG  645

seq1  AAGCCCAGTGGCTGTGAGGGCCACCTACACATTCCCCCTTCGCCAGCTAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGTGGCTGTGAGGGCCACCTACACATTCCCCCTTCGCCAGCTAG  695

seq1  TTCCAGAGATTGACTCAGTAGGACTTGGGTGGATATGGAAATGTGGCTCC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGATTGACTCAGTAGGACTTGGGTGGATATGGAAATGTGGCTCC  745

seq1  TTTCCAACGAACTCCCCCAGTCCTGAGACGTGAGCCTGAGAAATATGTTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACGAACTCCCCCAGTCCTGAGACGTGAGCCTGAGAAATATGTTA  795

seq1  GGAAAGACCATTCTGTGGGGCTGGAGAGATGGCTCAGCACTTAAGATCAC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACCATTCTGTGGGGCTGGAGAGATGGCTCAGCACTTAAGATCAC  845

seq1  TGCTCTTCCAGAGGACCATAGGCCAGATCACAGGCATCTTAACTGCAGCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAGAGGACCATAGGCCAGATCACAGGCATCTTAACTGCAGCC  895

seq1  CCAGATGCCCCCTTCAGGCCTTCATGGGTACTGCATACATGTGGCCTATC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGCCCCCTTCAGGCCTTCATGGGTACTGCATACATGTGGCCTATC  945

seq1  ATGCACACTCAGGCAAAACACTCGTAAAAATAAACCTGTCTTAAAGAAGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTCAGGCAAAACACTCGTAAAAATAAACCTGTCTTAAAGAAGA  995

seq1  AAGACTGCTCCAGGGCCACTCACCTCCACAGCGAGCGAGCCACCAGCAGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTCCAGGGCCACTCACCTCCACAGCGAGCGAGCCACCAGCAGA  1045

seq1  ATTC  1042
      ||||
seq2  ATTC  1049

seq1: chr5_146961856_146962342
seq2: B6Ng01-013A16.g_66_552

seq1  GAATTCCTGCTCCATCAATAGCAGCAGGTGGATTCCAAGAGGCACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCCATCAATAGCAGCAGGTGGATTCCAAGAGGCACAAAAT  50

seq1  GAAAAGCCTCCCAAATCCTGCCTGTGTTGCCATCCCTGTGGGAGGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTCCCAAATCCTGCCTGTGTTGCCATCCCTGTGGGAGGGGTTC  100

seq1  CACTCTCCTCACTGATGTGGGGGGATTGCAGCTAACTTGATGAGGGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTCACTGATGTGGGGGGATTGCAGCTAACTTGATGAGGGATTG  150

seq1  TCCTAAATCAGAGAATTCTGTGTTAATTCAGGGACCCTCCAAATGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATCAGAGAATTCTGTGTTAATTCAGGGACCCTCCAAATGCCCTG  200

seq1  TGGGGAACAGGAAAAGGACAACATGTCAACATGCCCTGTCCTCCTCAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACAGGAAAAGGACAACATGTCAACATGCCCTGTCCTCCTCAAGC  250

seq1  TGACTAGGGATGCAGGCAGGGGTTTGTTTTGGCGCAGAGGAAACTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGGGATGCAGGCAGGGGTTTGTTTTGGCGCAGAGGAAACTTCAGA  300

seq1  AAAAGAGGAAGCCCAAAGATTGTAAAAGGAACCCGAGGACCTGGCCACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAAGCCCAAAGATTGTAAAAGGAACCCGAGGACCTGGCCACGT  350

seq1  CAAAATGAAAATGATGAGGGAAAAAACAAGACTCTTCCTTTCAAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAATGATGAGGGAAAAAACAAGACTCTTCCTTTCAAAATCAG  400

seq1  CATTCAGAAAGGCAGGCAGACACTGCAGAACCTCATGATGGCTTGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAAAGGCAGGCAGACACTGCAGAACCTCATGATGGCTTGACTTG  450

seq1  TGGGGACTGTGCTGGGTGTGGGTAGAGGAGGAGGTAG  487
      |||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGTGCTGGGTGTGGGTAGAGGAGGAGGTAG  487