BAC Information

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BAC

Clone NameB6Ng01-013F18
Chromosome5 (Build37)
Map Location 58,619,383 - 58,620,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F18.bB6Ng01-013F18.g
ACCDH848191DH848192
length1,1741,099
definitionDH848191|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F18, 5' end.DH848192|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatgaagcaaaatggagtccaccaacattgacccgttgtctt
ttattgtaaatgctttccatgtaccaagaataaatattctttctttgaga
aacaaatctagacattttgttatgcatggaaaacaaaatactcattctgg
tgtgatctaccttgttaacattgccactaaggtgacaagcaccacccaaa
gatcagcttgagactgcagactcctcacggcattctaactgctggattaa
tatgagaccgacaggaatagtttacactatttcaaactaaaaagtgtcct
aatcccaagatttcaccaaacaattaagctggacaccatggaacgttgac
agagataatgtcgttaaagcaaacaattttactgtttcatacttaatatc
ctttccttttattttgacaaaacaggtaaatgatataggggatttgcctg
gcaggccagaaagccacaagagtccacctttttctgctttctcagaaatg
ggattacaaacacatgtaacatgcatggcttgtttataaatgtttaaagt
gtttgaactcagatcatgtatgctttatgaatttttctatacctccagcc
tatatctaccccacacatacacactcaacacacgacacacatatatattt
ctttcaaaagatgtacatgatcattatttgacaaagcttcatctgcagta
tacacttgagatactgacgatatataatatttaagaaacaaatacaaggt
tattatcaatagttttaattcatttatcaattaatattcatgtattaata
atacttaaacaaacaatatgaaaagtaataataattacatattacaggca
attctttttaaatcaacaaatatattcagttagacaatgcaattgattag
gaaaaataaaataattatttttatgaaacagtatgaaaaggataggcatg
tatcatgatacatggtactctttctgcaaacaaaatgatatttttcatta
tttttcctattttgaactacaatataaagcttgttatttctccctgatta
tatttttatgacttaatagaatatggctcaaccacaggctcaaataggtt
cgtcctaattggacctgcaatttggtgattaaatttactgaagaaggcaa
tcatggaatataccatctattcga
gaattccagttgattggcaataacaagtgcttgcttttgtgaaggttggt
tctctggattagaaaccatttctagtctatgctgtacttagaattttaag
atgtctccatgacacctcatttgtcttaaagcactcaaaactaaatatac
taaacttacccttcaaaaggtctgtctttgatctctgccaacattcattc
aacagccttttatagctaaaaaaaaaaaatagcctcaatatccatctttg
ctggtaaggtgattcctaaatctactgtgatatcatacaccgataaatga
ctttaaaagacagggaaatgtgcttgagggaggaggagttatctgatatg
attttcattaaatagagaaggaattttacatgaaagtgacatttaaagct
atctgtgagtgttctgaagcaattttatttgagaatgagaaatcgagaca
atattgagtgttaaaacggtgcctatgtttgttggctcagtaatcttaca
gactgcttaatctgggctttggattttgaaattgagtccagcccctgtac
ttttgtaatggcctccttttatttatgcacctaaccattgtctgtgaagt
caggtaatagctgcaaatcaaagggcacattcttgttccctgtcacatgc
cctgctccttaaacattagaataaacagatgaggcttggccaaaagctgt
tgtcagcagcacactgcttccagtggcaataaatctcccactaatgacgt
tagggaatagagctggtcttttgtactgtctttcctcactgctctatttt
aaggcgatgcctctggtaaacaagcactttctatatgtggcggtattaca
tggtgtgaaatagctgggtccattagcatgatgtgaaactgggtctagaa
cattaaagggtattattgtgatgtggacagctgagaatactgctctgacc
atgtagcacactgacaaaggcagcctgctagtttctttaaaaagcgtcac
attgttttctacatttattaaaagtgaacctctttgacctcagcctgaat
gatatattaaatgctgacgaggacaaatgggtgcgtcaaacattttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58619383_58620495
seq2: B6Ng01-013F18.g_65_1163

seq1  GAATTCCAGTTGATTGGCAATAACAAGTGCTTGCTTTTGTGAAGGTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGATTGGCAATAACAAGTGCTTGCTTTTGTGAAGGTTGGT  50

seq1  TCTCTGGATTAGAAACCATTTCTAGTCTATGCTGTACTTAGAATTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATTAGAAACCATTTCTAGTCTATGCTGTACTTAGAATTTTAAG  100

seq1  ATGTCTCCATGACACCTCATTTGTCTTAAAGCACTCAAAACTAAATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCATGACACCTCATTTGTCTTAAAGCACTCAAAACTAAATATAC  150

seq1  TAAACTTACCCTTCAAAAGGTCTGTCTTTGATCTCTGCCAACATTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTACCCTTCAAAAGGTCTGTCTTTGATCTCTGCCAACATTCATTC  200

seq1  AACAGCCTTTTATAGCTAAAAAAAAAAAATAGCCTCAATATCCATCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTTTATAGCTAAAAAAAAAAAATAGCCTCAATATCCATCTTTG  250

seq1  CTGGTAAGGTGATTCCTAAATCTACTGTGATATCATACACCGATAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGGTGATTCCTAAATCTACTGTGATATCATACACCGATAAATGA  300

seq1  CTTTAAAAGACAGGGAAATGTGCTTGAGGGAGGAGGAGTTATCTGATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGACAGGGAAATGTGCTTGAGGGAGGAGGAGTTATCTGATATG  350

seq1  ATTTTCATTAAATAGAGAAGGAATTTTACATGAAAGTGACATTTAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTAAATAGAGAAGGAATTTTACATGAAAGTGACATTTAAAGCT  400

seq1  ATCTGTGAGTGTTCTGAAGCAATTTTATTTGAGAATGAGAAATCGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGTGTTCTGAAGCAATTTTATTTGAGAATGAGAAATCGAGACA  450

seq1  ATATTGAGTGTTAAAACGGTGCCTATGTTTGTTGGCTCAGTAATCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGTGTTAAAACGGTGCCTATGTTTGTTGGCTCAGTAATCTTACA  500

seq1  GACTGCTTAATCTGGGCTTTGGATTTTGAAATTGAGTCCAGCCCCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTAATCTGGGCTTTGGATTTTGAAATTGAGTCCAGCCCCTGTAC  550

seq1  TTTTGTAATGGCCTCCTTTTATTTATGCACCTAACCATTGTCTGTGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATGGCCTCCTTTTATTTATGCACCTAACCATTGTCTGTGAAGT  600

seq1  CAGGTAATAGCTGCAAATCAAAGGGCACATTCTTGTTCCCTGTCACATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATAGCTGCAAATCAAAGGGCACATTCTTGTTCCCTGTCACATGC  650

seq1  CCTGCTCCTTAAACATTAGAATAAACAGATGAGGCTTGGCC-AAAGCTGT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGCTCCTTAAACATTAGAATAAACAGATGAGGCTTGGCCAAAAGCTGT  700

seq1  TGTCAGCAGCACACTGCTTCCAGTGGCAATAAATCTCCCACTAATGACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAGCACACTGCTTCCAGTGGCAATAAATCTCCCACTAATGACGT  750

seq1  TAGGGAATAGAGCTGGTCTTTTGTACTGTCTTTCCTCACTGCTCTATTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAATAGAGCTGGTCTTTTGTACTGTCTTTCCTCACTGCTCTATTTT  800

seq1  AAGGCGATGCCTCT-GTAAACAAGCAC-TTCTATAATGT-GCGGTATTAC  846
      |||||||||||||| |||||||||||| |||||| |||| ||||||||||
seq2  AAGGCGATGCCTCTGGTAAACAAGCACTTTCTAT-ATGTGGCGGTATTAC  849

seq1  ATGGTGTGAAATAAGCTGGGTCCATTAGCATGATGTGAAACTGGGTCTTA  896
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATGGTGTGAAAT-AGCTGGGTCCATTAGCATGATGTGAAACTGGGTC-TA  897

seq1  GAACAATAAAGGGATATATTGTGATGTGGACAGCTGAGGAAATACTGCTC  946
      ||||| |||||||   ||||||||||||||||||||||  ||||||||||
seq2  GAACATTAAAGGGTATTATTGTGATGTGGACAGCTGAG--AATACTGCTC  945

seq1  TGAACCATGTAAGCACACTGACAAAAGGCAGCCTGGCTTAGTTTTCTTTA  996
      || ||||||| ||||||||||| ||||||||||||   ||| ||||||||
seq2  TG-ACCATGT-AGCACACTGAC-AAAGGCAGCCTG--CTAG-TTTCTTTA  989

seq1  TAAAAGCCTTCACAT--GTTTCTACATTTATTAAAAAGTGACCCTC-TTG  1043
       ||||| | ||||||   |||||||||||||| |||||||| |||| |||
seq2  -AAAAG-CGTCACATTGTTTTCTACATTTATT-AAAAGTGAACCTCTTTG  1036

seq1  AACTCAGTCTGAATGATAT-TAAAATGCTGACAGAGAGACAAAAATGAAA  1092
      | ||||| ||||||||||| | |||||||||| ||| |||       |||
seq2  ACCTCAGCCTGAATGATATATTAAATGCTGAC-GAG-GAC-------AAA  1077

seq1  TGTCTGC-CAAAACATTTTCCC  1113
      ||  |||   ||||||||||||
seq2  TGGGTGCGTCAAACATTTTCCC  1099