BAC Information

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BAC

Clone NameB6Ng01-014E12
Chromosome5 (Build37)
Map Location 122,917,852 - 123,115,619
singlet/doubletdoublet
Overlap geneAtp2a2, Ift81, P2rx7
Upstream geneTmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Downstream geneP2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E12.bB6Ng01-014E12.g
ACCDH848871DH848872
length1,1341,056
definitionDH848871|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E12, 5' end.DH848872|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,917,852 - 122,918,997)(123,114,554 - 123,115,619)
sequence
gaattccttgtctacagtgaaaaatcctgtcatttcagaaggtggtttgt
gctaggtggtagtggtgcaggcctttaatcatatcattcaggcggcagaa
gcaggtagacctctgtgtgagtttgaggccagcctgatttacaaagttcc
aggacatctaaagctacacagagaaaccctgcctccaaaaaacaaaaaag
gaagtctgaacaatgctcaaccaggttccccctcacagcaatgctctatc
aacagctcagagagccttcaacctaactgtctaaacagtgatgtagtcta
agataacccaagcaaaaatagggggattcttagtcagcaaatcaccaatg
attgtttttaatgctcagaattctacatcaagtagcccagagattttcat
tctattgttttactttaaaaacaggcataagaagaagaaactcatagttc
agagtcaaaacactcaagtaaagtaggcagagctgctgtagaatacctgg
gcccctcttcctaaccaggctccaatcagtgtctatcagtcctggagctg
cttgcttgccatcgccctctacctccttttgggagtcaggatttcactgt
gtagctggcctcaaactcagagatgatgtgtgcttcttcagcttgagttt
tgggattaaaagtatgtgccactacatgggtgtgcgtgctcattttatag
aaaaatcatagggaaaaataggttcactcaagattacacaaatcactaag
ttaaacagcaaagcctgagttagtagcctatcttttctgtgggaaaaaaa
aaaacctaccttgacctttcattgaaaatgtgaccctcaccaccacttaa
aagtctattgttccagcctcaaatatgccatatgcatatgcctgtacaat
tagcttctcaatttcttctgttttcttctttaaatccgatagataatgtc
tcattcaacctgggctagcctcaactttctgtgtagtcagaacaatcctg
acgtctgatctgctgcctcgctgcagactgtgactgatcacgtgtgggtc
actgtgctccagttcagtcctactgagcacataagggtttcttatttacc
tcacgacattctaacagagaagaaagcgaaaatg
gaattccatgccagcctgggctacctaacgcgacccgctctcaaagaact
gaaaatggtcagttcatcagtggtggcgcacacctttaatcccagcacac
cgagggaggcagaggaaggaggagctctgagtttgaggccagcctggtct
acagagtgagttcctgaacaaccaggtatacacagaggaccacacactca
cccccatctcaaaaaacaaaacaaaacaaaacccaaacgaaaacaataag
tccttgtggccactgaaacaagatgcttggttgctggctttaaagatgga
ggaagtgactgccaaccaatacataaatacaggacatcccctccccccca
gggtggaaatgcaaacaagcgctcttccctggagcctccagcgggagtgc
attgctgttgacacctggaggtcagccgaatctggactttgactccagac
acagagaaaagacatatgctactatttttttaaaaaagatttatatatct
atattatatatgtgagtacactgtccctgtcttcagacacagtagaagag
ggcatcggatcccattaaagatggttgtgagccatcatgtggttgctagg
gattgaactcaggacctctggaagagcaatcagggctcttaactgctgag
ccactccccagccccaacatatgttattttaagctggcatgtagtggtaa
gttgctaccacaatcagggggagaaatgcacctcacaagtagctcactca
ggactgtgggattccttgaaagaatatagggaaagccctgggcactgggt
atagttgaccgaatataaattgagtcgtgacttcagaacccagaatgtca
gcctctaccatcagatgctgtcacttgacatttgacacccctccacccca
ccccccataaaaccactgtacagagacctcaccaacctgaactgcactct
gtaaagttctctcctgctctgaagatgtcccctagtcgggagatgaacac
tgagggtccaagtcttgtgaaagtacagagcccgtcatagttgcaagatg
tttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122917852_122918997
seq2: B6Ng01-014E12.b_49_1182

seq1  GAATTCCTTGTCTACAGTGAAAAATCCTGTCATTTCAGAAGGTGGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTCTACAGTGAAAAATCCTGTCATTTCAGAAGGTGGTTTGT  50

seq1  GCTAGGTGGTAGTGGTGCAGGCCTTTAATCATATCATTCAGGCGGCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTGGTAGTGGTGCAGGCCTTTAATCATATCATTCAGGCGGCAGAA  100

seq1  GCAGGTAGACCTCTGTGTGAGTTTGAGGCCAGCCTGATTTACAAAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGACCTCTGTGTGAGTTTGAGGCCAGCCTGATTTACAAAGTTCC  150

seq1  AGGACATCTAAAGCTACACAGAGAAACCCTGCCTCCAAAAAACAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTAAAGCTACACAGAGAAACCCTGCCTCCAAAAAACAAAAAAG  200

seq1  GAAGTCTGAACAATGCTCAACCAGGTTCCCCCTCACAGCAATGCTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGAACAATGCTCAACCAGGTTCCCCCTCACAGCAATGCTCTATC  250

seq1  AACAGCTCAGAGAGCCTTCAACCTAACTGTCTAAACAGTGATGTAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCAGAGAGCCTTCAACCTAACTGTCTAAACAGTGATGTAGTCTA  300

seq1  AGATAACCCAAGCAAAAATAGGGGGATTCTTAGTCAGCAAATCACCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCCAAGCAAAAATAGGGGGATTCTTAGTCAGCAAATCACCAATG  350

seq1  ATTGTTTTTAATGCTCAGAATTCTACATCAAGTAGCCCAGAGATTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTAATGCTCAGAATTCTACATCAAGTAGCCCAGAGATTTTCAT  400

seq1  TCTATTGTTTTACTTTAAAAACAGGCATAAGAAGAAGAAACTCATAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTTACTTTAAAAACAGGCATAAGAAGAAGAAACTCATAGTTC  450

seq1  AGAGTCAAAACACTCAAGTAAAGTAGGCAGAGCTGCTGTAGAATACCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAAACACTCAAGTAAAGTAGGCAGAGCTGCTGTAGAATACCTGG  500

seq1  GCCCCTCTTCCTAACCAGGCTCCAATCAGTGTCTATCAGTCCTGGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTTCCTAACCAGGCTCCAATCAGTGTCTATCAGTCCTGGAGCTG  550

seq1  CTTGCTTGCCATCGCCCTCTACCTCCTTTTGGGAGTCAGGATTTCACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCCATCGCCCTCTACCTCCTTTTGGGAGTCAGGATTTCACTGT  600

seq1  GTAGCTGGCCTCAAACTCAGAGATGATGTGTGCTTCTTCAGCTTGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGCCTCAAACTCAGAGATGATGTGTGCTTCTTCAGCTTGAGTTT  650

seq1  TGGGATTAAAAGTATGTGCCACTACATGGGTGTGCGTGCTCATTTTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAAGTATGTGCCACTACATGGGTGTGCGTGCTCATTTTATAG  700

seq1  AAAAATCATA-GGAAAAATAGGTTCACTCAAGATTACACAAATCACTAAG  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATAGGGAAAAATAGGTTCACTCAAGATTACACAAATCACTAAG  750

seq1  TTAAACAGCAAAGCCTGAGTTAGTAGCCTATCTTTTCTGTGGGAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGCAAAGCCTGAGTTAGTAGCCTATCTTTTCTGTGGGAAAAAAA  800

seq1  AAAACCTACCTTGACCTTTCATTGAAAATGTGACCCTCACCACCACTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACCTTGACCTTTCATTGAAAATGTGACCCTCACCACCACTTAA  850

seq1  AAGTCTATTGTTCCAGCCTCAAATATGCCATATGCATATGCCTGTAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTCTATTGTTCCAGCCTCAAATATGCCATATGCATATGCCTGT-ACAA  899

seq1  TTAGCTTCTCAA-TTCTTCTGTTTTCTTCTTTAAATCCGATAGATAATGT  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCTCAATTTCTTCTGTTTTCTTCTTTAAATCCGATAGATAATGT  949

seq1  CTCATTCAACCTGGGCTAGCCTCAAACTTTCTGTGTAGTCAAGAACAATC  998
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CTCATTCAACCTGGGCTAGCCTC-AACTTTCTGTGTAGTC-AGAACAATC  997

seq1  CTGACGTCTGATCTTGCTGCCTCGCCTGCAGGACTGTGACTGATCACGTG  1048
      ||||||||||||| |||||||||| ||||| |||||||||||||||||||
seq2  CTGACGTCTGATC-TGCTGCCTCG-CTGCA-GACTGTGACTGATCACGTG  1044

seq1  TGGGTCACTGTGCTCAGTTTCAGTTCTTACTGAGCACATTAAAAGGTTTC  1098
      |||||||||||||||   ||||| || ||||||||||||  || ||||||
seq2  TGGGTCACTGTGCTCCAGTTCAG-TCCTACTGAGCACAT--AAGGGTTTC  1091

seq1  TTATTTTACTTCAAACGACATTCTAACAAGAGAAGAAAGCAGAAAATG  1146
      ||| ||||| ||  ||||||||||||| |||||||||||| |||||||
seq2  TTA-TTTACCTC--ACGACATTCTAAC-AGAGAAGAAAGC-GAAAATG  1134

seq1: chr5_123114554_123115619
seq2: B6Ng01-014E12.g_69_1124 (reverse)

seq1  GAGAAACATCTTGCCAACTATGAACGGCTCTTGTACCTTTCACAAGACTT  50
      ||||||||||||| |||||||||  ||||| |||| ||||||||||||||
seq2  GAGAAACATCTTG-CAACTATGACGGGCTC-TGTA-CTTTCACAAGACTT  47

seq1  GGGACCCTCAGTGTTCCATCTTCCGACTAGGGGACATCTTCCAGGAAGCA  100
       |||||||||||||| ||||| |||||||||||||||||| |||  ||||
seq2  -GGACCCTCAGTGTT-CATCTCCCGACTAGGGGACATCTT-CAG--AGCA  92

seq1  GGAGAGAACTTTACAGAGGTGGCAGTTCAGGTTGGTGAGGTCTCTGTACA  150
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  GGAGAGAACTTTACAGAG--TGCAGTTCAGGTTGGTGAGGTCTCTGTACA  140

seq1  GTGGTTTTATGGGGGGTGGGGTGGA-GGGTGTCAAATGTCAAGTGACAGC  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGTTTTATGGGGGGTGGGGTGGAGGGGTGTCAAATGTCAAGTGACAGC  190

seq1  ATCTGATGGTAGAGGCTGACATTCTGGGTTCTGAAGTCACGACTCAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGGTAGAGGCTGACATTCTGGGTTCTGAAGTCACGACTCAATTT  240

seq1  ATATTCGGTCAACTATACCCAGTGCCCAGGGCTTTCCCTATATTCTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCGGTCAACTATACCCAGTGCCCAGGGCTTTCCCTATATTCTTTCA  290

seq1  AGGAATCCCACAGTCCTGAGTGAGCTACTTGTGAGGTGCATTTCTCCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCCACAGTCCTGAGTGAGCTACTTGTGAGGTGCATTTCTCCCCC  340

seq1  TGATTGTGGTAGCAACTTACCACTAACATGCCAGCTTAAAATAACATATG  399
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGATTGTGGTAGCAACTTACCACT-ACATGCCAGCTTAAAATAACATATG  389

seq1  TTGGGGCTGGGGAGTGGCTCAGCAGTTAAGAGCCCTGATTGCTCTTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGGGGAGTGGCTCAGCAGTTAAGAGCCCTGATTGCTCTTCCAG  439

seq1  AGGTCCTGAGTTCAATCCCTAGCAACCACATGATGGCTCACAACCATCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGAGTTCAATCCCTAGCAACCACATGATGGCTCACAACCATCTT  489

seq1  TAATGGGATCCGATGCCCTCTTCTACTGTGTCTGAAGACAGGGACAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATCCGATGCCCTCTTCTACTGTGTCTGAAGACAGGGACAGTGT  539

seq1  ACTCACATATATAATATAGATATATAAATCTTTTTTAAAAAAATAGTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATATATAATATAGATATATAAATCTTTTTTAAAAAAATAGTAGC  589

seq1  ATATGTCTTTTCTCTGTGTCTGGAGTCAAAGTCCAGATTCGGCTGACCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTTTCTCTGTGTCTGGAGTCAAAGTCCAGATTCGGCTGACCTC  639

seq1  CAGGTGTCAACAGCAATGCACTCCCGCTGGAGGCTCCAGGGAAGAGCGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCAACAGCAATGCACTCCCGCTGGAGGCTCCAGGGAAGAGCGCT  689

seq1  TGTTTGCATTTCCACCCTGGGGGGGAGGGGATGTCCTGTATTTATGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATTTCCACCCTGGGGGGGAGGGGATGTCCTGTATTTATGTATT  739

seq1  GGTTGGCAGTCACTTCCTCCATCTTTAAAGCCAGCAACCAAGCATCTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCAGTCACTTCCTCCATCTTTAAAGCCAGCAACCAAGCATCTTGT  789

seq1  TTCAGTGGCCACAAGGACTTATTGTTTTCGTTTGGGTTTTGTTTTGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCCACAAGGACTTATTGTTTTCGTTTGGGTTTTGTTTTGTTTT  839

seq1  GTTTTTTGAGATGGGGGTGAGTGTGTGGTCCTCTGTGTATACCTGGTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGAGATGGGGGTGAGTGTGTGGTCCTCTGTGTATACCTGGTTGT  889

seq1  TCAGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGCTCCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGCTCCTCC  939

seq1  TTCCTCTGCCTCCCTCGGTGTGCTGGGATTAAAGGTGTGCGCCACCACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCCTCCCTCGGTGTGCTGGGATTAAAGGTGTGCGCCACCACTG  989

seq1  ATGAACTGACCATTTTCAGTTCTTTGAGAGCGGGTCGCGTTAGGTAGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGACCATTTTCAGTTCTTTGAGAGCGGGTCGCGTTAGGTAGCCC  1039

seq1  AGGCTGGCATGGAATTC  1066
      |||||||||||||||||
seq2  AGGCTGGCATGGAATTC  1056