BAC Information

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BAC

Clone NameB6Ng01-014O02
Chromosome5 (Build37)
Map Location 142,507,574 - 142,610,726
singlet/doubletdoublet
Overlap geneSdk1
Upstream geneLOC623466
Downstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014O02.bB6Ng01-014O02.g
ACCDH849298DH849299
length901805
definitionDH849298|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O02, 5' end.DH849299|Mus musculus domesticus DNA, BAC clone: B6Ng01-014O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,507,574 - 142,508,466)(142,609,920 - 142,610,726)
sequence
gaattccaccactgtgcacttcctgtggaacccgccaccccagcagttca
tcaacggcatcaaccagggatacaaggtacctggcctggttttggaacct
ccaaagggcattcatgggtagtattaatcatatcatactctgggtctcac
ccttcctatgtggtcataaacccagggcatcaaacacagagtactgcaaa
cttggcagggctgccatctgtcctcattcttttcagatattccaggccag
aaagttgaatgctcagctgataagacggcacaagaaaacagcctctagtc
agagtaatgggcttcagggaaggctgggagatgggacagccagtaaagtg
cttgccatacaagcacaaggacttgggtggtccctctaaacctatacagt
gaaaagatatgagcacattaatcccagcactggggaagcagagatggggg
aatctcaggtgcttgctggccagccagcctacttgaatcagtaagctgca
agtttcagtgagagactctgtctcaaaaactaagatggacaatgattgag
ggagacactctgggctttacatgcatggacacccgtgggcacacatatac
atgcatgccagcatacatgtacacacattaatcacacatacacatacgca
caaactgtagcacacatatatacacatgccatcatatatatatgcataca
ttaatttcaccacatgtacagagagaataagagagagagaaagaacatga
gaggaagaacatgagagagagagcccaggggaggatctatgtgggctctt
tgaagtcagcctgtggtccagcccttcttcctataacacagaaatcaagg
ggcgggaattcatgagaagagactgctgtcccagcagaaactcattttac
t
gaattctctaagcagcagaattccaggaacttccagtgtagaagacacag
tgaagaatgaacctggacagtctctgggaagccgtgctcactctgaggtg
tgccatgctctttgcctggtgcctttctttctcgttttaatggattgctc
actctgcttcacactggctacactgatgccaaggggctggttttatttga
gtcaagatccctaaaagattaagggacctccttggactgctgcaggtgtc
agtgtggcgctgtgttcccatcccagcagcaactgaaaacaaaaacaaaa
ccagtcttttctcccctccctctggcgtgtttacggaaggcgagagccac
agcagcacccaggactttgaacttctgcttggaatgtttctggcttcccg
tcacagcccctgatgccaagtcagggctgaagcagggtctgtagggagta
aggactggaaatgtcagagatgagtatccatgacacctgctgtccaaaga
ggcctcagtaggatcacagtagcccctggcatactgaggtcatggccatt
tgctatttggcataggtggctcctagatatattggggtagatggaagccc
tggctgattctctcttcttctgtcctgtcccccatactctggtgaaccca
gaggctggggacacaggggtgagcttgccaagtgtcaccaggaaaacatt
tggaaatatcgttttattggccttgaaagacacctgtcactgagtattga
ctttgtcatgagggagctgttattttccagtagggacctttgctctaagt
cctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142507574_142508466
seq2: B6Ng01-014O02.b_37_937

seq1  GAATTCCACCACTGTGCACTTCCTGTGGAACCCGCCACCCCAGCAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCACTGTGCACTTCCTGTGGAACCCGCCACCCCAGCAGTTCA  50

seq1  TCAACGGCATCAACCAGGGATACAAGGTACCTGGCCTGGTTTTGGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGCATCAACCAGGGATACAAGGTACCTGGCCTGGTTTTGGAACCT  100

seq1  CCAAAGGGCATTCATGGGTAGTATTAATCATATCATACTCTGGGTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGCATTCATGGGTAGTATTAATCATATCATACTCTGGGTCTCAC  150

seq1  CCTTCCTATGTGGTCATAAACCCAGGGCATCAAACACAGAGTACTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTATGTGGTCATAAACCCAGGGCATCAAACACAGAGTACTGCAAA  200

seq1  CTTGGCAGGGCTGCCATCTGTCCTCATTCTTTTCAGATATTCCAGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGGGCTGCCATCTGTCCTCATTCTTTTCAGATATTCCAGGCCAG  250

seq1  AAAGTTGAATGCTCAGCTGATAAGACGGCACAAGAAAACAGCCTCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAATGCTCAGCTGATAAGACGGCACAAGAAAACAGCCTCTAGTC  300

seq1  AGAGTAATGGGCTTCAGGGAAGGCTGGGAGATGGGACAGCCAGTAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATGGGCTTCAGGGAAGGCTGGGAGATGGGACAGCCAGTAAAGTG  350

seq1  CTTGCCATACAAGCACAAGGACTTGGGTGGTCCCTCTAAACCTATACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATACAAGCACAAGGACTTGGGTGGTCCCTCTAAACCTATACAGT  400

seq1  GAAAAGATATGAGCACATTAATCCCAGCACTGGGGAAGCAGAGATGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATATGAGCACATTAATCCCAGCACTGGGGAAGCAGAGATGGGGG  450

seq1  AATCTCAGGTGCTTGCTGGCCAGCCAGCCTACTTGAATCAGTAAGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGTGCTTGCTGGCCAGCCAGCCTACTTGAATCAGTAAGCTGCA  500

seq1  AG-TTCAGTGAGAGACTCTGTCTCAAAAACTAAGATGGACAATGATTGAG  549
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTGAGAGACTCTGTCTCAAAAACTAAGATGGACAATGATTGAG  550

seq1  GGAGACACTCTGGGCTTTACATGCATGGACACCCGTGGGCACACATATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTCTGGGCTTTACATGCATGGACACCCGTGGGCACACATATAC  600

seq1  ATGCATGCCAGCATACATGTACACACATTAATCACACATACACATACGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCCAGCATACATGTACACACATTAATCACACATACACATACGCA  650

seq1  C-AACTGTAGCACACATATATACACATGCCATCATATATATATGCATACA  698
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTAGCACACATATATACACATGCCATCATATATATATGCATACA  700

seq1  TTAATTACACCACATGTACAGAGAGAATAAGAGAGAGAGAAAGAACATGA  748
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCACCACATGTACAGAGAGAATAAGAGAGAGAGAAAGAACATGA  750

seq1  GAGGAAGAACATGAGAGAGAGAGCCCAGGGGA-GATCTATGTGGGCTCTT  797
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGAAGAACATGAGAGAGAGAGCCCAGGGGAGGATCTATGTGGGCTCTT  800

seq1  TG-AGTCAGCCTGTGTCCAAGCACTTCTTCCTATAACACAG-AATCAA-G  844
      || ||||||||||||  | ||| |||||||||||||||||| |||||| |
seq2  TGAAGTCAGCCTGTGGTCCAGCCCTTCTTCCTATAACACAGAAATCAAGG  850

seq1  GGCGGGAATTCATGAGAAGAGACTGCTGT-CCAGCAGAAAC-CATTTTAC  892
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GGCGGGAATTCATGAGAAGAGACTGCTGTCCCAGCAGAAACTCATTTTAC  900

seq1  T  893
      |
seq2  T  901

seq1: chr5_142609920_142610726
seq2: B6Ng01-014O02.g_68_872 (reverse)

seq1  ACAGGACTCTAGCAGCAAAGGTCCCTACTGGGAATATAACAGCTCCCCTC  50
      |||||||| ||| |||||||||||||||| |||| ||||||||| |||||
seq2  ACAGGACT-TAG-AGCAAAGGTCCCTACT-GGAAAATAACAGCT-CCCTC  46

seq1  ATTGACAAAGTCACTACTCAGTGACAGGTGTCTTTCAAGG-CAATAAAAC  99
      | ||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  A-TGACAAAGTCAATACTCAGTGACAGGTGTCTTTCAAGGCCAATAAAAC  95

seq1  GATATTTCCAAATG-TTTCCTGGTGACACTTGGC-AGCTCACCCCTGTGT  147
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GATATTTCCAAATGTTTTCCTGGTGACACTTGGCAAGCTCACCCCTGTGT  145

seq1  CCCCAGCCTCTGGGTTCACCAGAGTATGGGGGACAGGACAGAAGAAGAGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCTCTGGGTTCACCAGAGTATGGGGGACAGGACAGAAGAAGAGA  195

seq1  GAATCAGCCAGGGCTTCCATCTACCCCAATATATCTAGGAGCCACCTATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCCAGGGCTTCCATCTACCCCAATATATCTAGGAGCCACCTATG  245

seq1  CCAAATAGCAAATGGCCATGACCTCAGTATGCCAGGGGCTACTGTGATCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGCAAATGGCCATGACCTCAGTATGCCAGGGGCTACTGTGATCC  295

seq1  TACTGAGGCCTCTTTGGACAGCAGGTGTCATGGATACTCATCTCTGACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGCCTCTTTGGACAGCAGGTGTCATGGATACTCATCTCTGACAT  345

seq1  TTCCAGTCCTTACTCCCTACAGACCCTGCTTCAGCCCTGACTTGGCATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCTTACTCCCTACAGACCCTGCTTCAGCCCTGACTTGGCATCA  395

seq1  GGGGCTGTGACGGGAAGCCAGAAACATTCCAAGCAGAAGTTCAAAGTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGACGGGAAGCCAGAAACATTCCAAGCAGAAGTTCAAAGTCCT  445

seq1  GGGTGCTGCTGTGGCTCTCGCCTTCCGTAAACACGCCAGAGGGAGGGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCTGTGGCTCTCGCCTTCCGTAAACACGCCAGAGGGAGGGGAG  495

seq1  AAAAGACTGGTTTTGTTTTTGTTTTCAGTTGCTGCTGGGATGGGAACACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGGTTTTGTTTTTGTTTTCAGTTGCTGCTGGGATGGGAACACA  545

seq1  GCGCCACACTGACACCTGCAGCAGTCCAAGGAGGTCCCTTAATCTTTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACACTGACACCTGCAGCAGTCCAAGGAGGTCCCTTAATCTTTTAG  595

seq1  GGATCTTGACTCAAATAAAACCAGCCCCTTGGCATCAGTGTAGCCAGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGACTCAAATAAAACCAGCCCCTTGGCATCAGTGTAGCCAGTGT  645

seq1  GAAGCAGAGTGAGCAATCCATTAAAACGAGAAAGAAAGGCACCAGGCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGTGAGCAATCCATTAAAACGAGAAAGAAAGGCACCAGGCAAA  695

seq1  GAGCATGGCACACCTCAGAGTGAGCACGGCTTCCCAGAGACTGTCCAGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGCACACCTCAGAGTGAGCACGGCTTCCCAGAGACTGTCCAGGT  745

seq1  TCATTCTTCACTGTGTCTTCTACACTGGAAGTTCCTGGAATTCTGCTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCACTGTGTCTTCTACACTGGAAGTTCCTGGAATTCTGCTGCT  795

seq1  TAGAGAATTC  807
      ||||||||||
seq2  TAGAGAATTC  805