BAC Information

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BAC

Clone NameB6Ng01-015H11
Chromosome5 (Build37)
Map Location 49,695,772 - 49,858,505
singlet/doubletdoublet
Overlap geneLOC100041659
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneEG433885, LOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015H11.bB6Ng01-015H11.g
ACCDH849718DH849719
length1,1401,074
definitionDH849718|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H11, 5' end.DH849719|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,857,332 - 49,858,505)(49,695,772 - 49,696,837)
sequence
gaattcaaataaaaacactcttctaactttatgtatcttgcttcttggtg
agaaataatagacatttgcttttttttttttttttgtggtgctagggaat
tgaaactagagccctctgcatgttaagcaaatactctatcattgctctaa
atccctatcttaatatacctcttgaagtcttgaaattttataagtctaag
gaggtttaaacttaaaaaaaatcgcaatgctttaaaatatgttagagaga
tatcattaaaattgttctaatttctcttatctgtttaaaaatgtaaaaaa
aaaaataaatctgaaaaatcagttgaaccataattcctggcctagctggg
caaaggaatatattgagcctttgaacattactatggagatgttctgccct
tataacttattggtgaatttttacaaatacaagtatatttggctattata
tattcctgtacccacaatacctgtgatcgctagaagacaacccctagtga
ctatcatttctttctgtcttgtgtgaggcagagttgctttgttcttcatt
gatacttgttacagtctatctgcatctcctcttggtacccaatcttgcct
taggagcagtggacactaccaagtgggttctaaggatctgaacttgagtc
ctaacactggtaagcaaataggttacccactgatatttctccccagctca
tatagtacctggttggatacttcattaacaatgcaaatagaaatgcatct
gtatggctaccaaatgtattactacatagaaaacatttccaggtgatcgc
accacttcggagggatccctgtaaggctatggcttattttctagggaatt
tagaatttattttagaaatgaagaatgagtatgttgggaaaaatacaatg
aataactgaattcatttattttgttatagaatcagaacttctagtcaagc
attgttaatgaaacagctcaacattttaacagcttctactcaatagctct
gctgatctaactttacttgtcaatgagaaatggatgctagcaatgggcca
tgtcatgttctgtcaggctagcaacaaagctaatatgctctcccaatgct
atgcatagcaattcactccaatccaagatatgaaaactac
gaattctaaaaaccacatacaagatgcaatgcccatgatgtaatttaaga
gtgtaagccaagaagttaaaggagacagagggagacctaattatattagg
cacccaggaattctggaacgaactcatttgatcacagaggcacataaaga
aatataaaggaatctatttaaatttattatgtgcctgctgctagttcagc
tgttgctaacagacgctccatggagagcctatggagagaagagcattctg
atatgttctcctggtatgaacctggggaaatagagttaccaaaaaaaaaa
aactaaatgaaaatatgtggtatatcagggccaagtaaggttttagttta
acgatgctcaatctactaaaagttcaataaacctttattgaacaaattaa
tgaatgccaatatactttgaaccctagaatctatggtgaggtgtggtaga
gggccctgtttgaccttctgattatcaataataaggagaaggaaattgtg
ttatataataggaaaattgacacttgtctttcttcatagcttagcatcag
tttgttctccatcttgtgctaggtgagcagtaacttaccatctttgaggc
tctgtttaagcagttctcttctatgctgagtaaatgcacaggaggacagc
tgcacttaaaccacaaagaacatttttctgtagtgagtagagtcctccaa
tctttccaggggaaaaaatacatgggaataataatcagaagaaaatatgc
aaagttccaagacaaatggaaccttgtagcataaaaacattaaagaaaat
tcaaattaggttctgtttttctgaatttcccaactaaatgctggaaattt
tctttacaagtttgatttttaagtgtgggagaatagatctatgaatatca
atctgttctcaagacttgaatcattatggtacattcattagtaaaggtga
tggtccaaagcaattgcataacacttagtggtttggttcagaagctgtat
ttaacctccagtgaacaaaggccactgttcacgcaccacagcactttttc
taatagagttaatgaaggtaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49857332_49858505
seq2: B6Ng01-015H11.b_46_1185 (reverse)

seq1  GTAGTTTTCATAATACTTTTAGAATTGTTGATGGGATTGCTGGTATGACT  50
      ||||||||||||     | | | ||||  ||  | |||||   ||||  |
seq2  GTAGTTTTCATA-----TCTTGGATTG--GAGTGAATTGC---TATGCAT  40

seq1  AGGCATTGTGGAAGAAGCATATTACCCTTTGTTGCTTAGCTCCTGAACAA  100
      | |||||| |||   |||||||||  ||||||||| |||  |||||   |
seq2  A-GCATTG-GGA--GAGCATATTA-GCTTTGTTGC-TAG--CCTGA--CA  80

seq1  GAACATGGGACCATGTGCCACATGCTAGCATTCATTTCCTTCATTGACAA  150
      |||||||    |||| |||   ||||||||| ||||||  |||||||| |
seq2  GAACATG---ACATG-GCCCATTGCTAGCATCCATTTC--TCATTGAC-A  123

seq1  AGTAAAGTATAAGATCAAAGCAGAGGCTATGAGGTAGAAAGCTGTTAAAA  200
      |||||||  | |||||  |||||| |||||   |||| ||||||||||||
seq2  AGTAAAG--TTAGATC--AGCAGA-GCTATTGAGTAG-AAGCTGTTAAAA  167

seq1  ATGGTTGAGCTGTTTTCATTAAC-ATGCTTGACTAGAAGTCTTGGATCTA  249
         ||||||||| |||||||||| ||||||||||||||||  ||  ||||
seq2  --TGTTGAGCTG-TTTCATTAACAATGCTTGACTAGAAGTTCTGATTCTA  214

seq1  TAACAAAATAAATGAATTCAAGTAATTCA-TGTA-TATTCCCAACATACC  297
      ||||||||||||||||||| ||| ||||| |||| | ||||||||||| |
seq2  TAACAAAATAAATGAATTC-AGTTATTCATTGTATTTTTCCCAACATA-C  262

seq1  TCATTCTTCATTTCTAAAATAAATTCTAAATTCCCTAG-AAATAAGCCAT  346
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCATTCTTCATTTCTAAAATAAATTCTAAATTCCCTAGAAAATAAGCCAT  312

seq1  AGCCTTACAGGGATCCCTCCGAAGTGGTGCGATCACCTGGAAATGTTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACAGGGATCCCTCCGAAGTGGTGCGATCACCTGGAAATGTTTTC  362

seq1  TATGTAGTAATACATTTGGTAGCCATACAGATGCATTTCTATTTGCATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTAATACATTTGGTAGCCATACAGATGCATTTCTATTTGCATTG  412

seq1  TTAATGAAGTATCCAACCAGGTACTATATGAGCTGGGGAGAAATATCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAGTATCCAACCAGGTACTATATGAGCTGGGGAGAAATATCAGT  462

seq1  GGGTAACCTATTTGCTTACCAGTGTTAGGACTCAAGTTCAGATCCTTAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACCTATTTGCTTACCAGTGTTAGGACTCAAGTTCAGATCCTTAGA  512

seq1  ACCCACTTGGTAGTGTCCACTGCTCCTAAGGCAAGATTGGGTACCAAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTGGTAGTGTCCACTGCTCCTAAGGCAAGATTGGGTACCAAGAG  562

seq1  GAGATGCAGATAGACTGTAACAAGTATCAATGAAGAACAAAGCAACTCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGATAGACTGTAACAAGTATCAATGAAGAACAAAGCAACTCTG  612

seq1  CCTCACACAAGACAGAAAGAAATGATAGTCACTAGGGGTTGTCTTCTAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAAGACAGAAAGAAATGATAGTCACTAGGGGTTGTCTTCTAGC  662

seq1  GATCACAGGTATTGTGGGTACAGGAATATATAATAGCCAAATATACTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGGTATTGTGGGTACAGGAATATATAATAGCCAAATATACTTGT  712

seq1  ATTTGTAAAAATTCACCAATAAGTTATAAGGGCAGAACATCTCCATAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAAAATTCACCAATAAGTTATAAGGGCAGAACATCTCCATAGTA  762

seq1  ATGTTCAAAGGCTCAATATATTCCTTTGCCCAGCTAGGCCAGGAATTATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAAGGCTCAATATATTCCTTTGCCCAGCTAGGCCAGGAATTATG  812

seq1  GTTCAACTGATTTTTCAGATTTATTTTTTTTTTTACATTTTTAAACAGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTGATTTTTCAGATTTATTTTTTTTTTTACATTTTTAAACAGAT  862

seq1  AAGAGAAATTAGAACAATTTTAATGATATCTCTCTAACATATTTTAAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATTAGAACAATTTTAATGATATCTCTCTAACATATTTTAAAGC  912

seq1  ATTGCGATTTTTTTTAAGTTTAAACCTCCTTAGACTTATAAAATTTCAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGATTTTTTTTAAGTTTAAACCTCCTTAGACTTATAAAATTTCAAG  962

seq1  ACTTCAAGAGGTATATTAAGATAGGGATTTAGAGCAATGATAGAGTATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGAGGTATATTAAGATAGGGATTTAGAGCAATGATAGAGTATTT  1012

seq1  GCTTAACATGCAGAGGGCTCTAGTTTCAATTCCCTAGCACCACAAAAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACATGCAGAGGGCTCTAGTTTCAATTCCCTAGCACCACAAAAAAA  1062

seq1  AAAAAAAAAGCAAATGTCTATTATTTCTCACCAAGAAGCAAGATACATAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAAATGTCTATTATTTCTCACCAAGAAGCAAGATACATAA  1112

seq1  AGTTAGAAGAGTGTTTTTATTTGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  AGTTAGAAGAGTGTTTTTATTTGAATTC  1140

seq1: chr5_49695772_49696837
seq2: B6Ng01-015H11.g_69_1142

seq1  GAATTCTAAAAACCACATACAAGATGCAATGCCCATGATGTAATTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAACCACATACAAGATGCAATGCCCATGATGTAATTTAAGA  50

seq1  GTGTAAGCCAAGAAGTTAAAGGAGACAGAGGGAGACCTAATTATATTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGCCAAGAAGTTAAAGGAGACAGAGGGAGACCTAATTATATTAGG  100

seq1  CACCCAGGAATTCTGGAACGAACTCATTTGATCACAGAGGCACATAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAATTCTGGAACGAACTCATTTGATCACAGAGGCACATAAAGA  150

seq1  AATATAAAGGAATCTATTTAAATTTATTATGTGCCTGCTGCTAGTTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGGAATCTATTTAAATTTATTATGTGCCTGCTGCTAGTTCAGC  200

seq1  TGTTGCTAACAGACGCTCCATGGAGAGCCTATGGAGAGAAGAGCATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAACAGACGCTCCATGGAGAGCCTATGGAGAGAAGAGCATTCTG  250

seq1  ATATGTTCTCCTGGTATGAACCTGGGGAAATAGAGTTACCAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCTCCTGGTATGAACCTGGGGAAATAGAGTTACCAAAAAAAAAA  300

seq1  AACTAAATGAAAATATGTGGTATATCAGGGCCAAGTAAGGTTTTAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGAAAATATGTGGTATATCAGGGCCAAGTAAGGTTTTAGTTTA  350

seq1  ACGATGCTCAATCTACTAAAAGTTCAATAAACCTTTATTGAACAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCTCAATCTACTAAAAGTTCAATAAACCTTTATTGAACAAATTAA  400

seq1  TGAATGCCAATATACTTTGAACCCTAGAATCTATGGTGAGGTGTGGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCAATATACTTTGAACCCTAGAATCTATGGTGAGGTGTGGTAGA  450

seq1  GGGCCCTGTTTGACCTTCTGATTATCAATAATAAGGAGAAGGAAATTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTTTGACCTTCTGATTATCAATAATAAGGAGAAGGAAATTGTG  500

seq1  TTATATAATAGGAAAATTGACACTTGTCTTTCTTCATAGCTTAGCATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATAGGAAAATTGACACTTGTCTTTCTTCATAGCTTAGCATCAG  550

seq1  TTTGTTCTCCATCTTGTGCTAGGTGAGCAGTAACTTACCATCTTTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCCATCTTGTGCTAGGTGAGCAGTAACTTACCATCTTTGAGGC  600

seq1  TCTGTTTAAGCAGTTCTCTTCTATGCTGAGTAAATGCACAGGAGGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAAGCAGTTCTCTTCTATGCTGAGTAAATGCACAGGAGGACAGC  650

seq1  TGCACTTAAACCACAAAGAACA-TTTTCTGTAGTGAGTAGAGTCCTCCAA  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCACTTAAACCACAAAGAACATTTTTCTGTAGTGAGTAGAGTCCTCCAA  700

seq1  TCTTTCCAGGGGAAAAAATACATGGGAATAATAATCAGAAGAAAATATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGGGGAAAAAATACATGGGAATAATAATCAGAAGAAAATATGC  750

seq1  AAAGTTCCAAGACAAATGGAACCTTGTAGCATAAAAACATTAAAGAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCAAGACAAATGGAACCTTGTAGCATAAAAACATTAAAGAAAAT  800

seq1  TCAAATTAGGTTCTGTTTTTCTGAATTTCCCAACTAAATGCTGGAAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAGGTTCTGTTTTTCTGAATTTCCCAACTAAATGCTGGAAATTT  850

seq1  TCTTTACAAGTTTGATTTTTAAGTGT-GGAGAATAGATCTATGAATATCA  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTTACAAGTTTGATTTTTAAGTGTGGGAGAATAGATCTATGAATATCA  900

seq1  ATCTGTTCTC-AGACTTGAATCATTATGGTACA-TCA-TAGTAAAGGTGA  945
      |||||||||| |||||||||||||||||||||| ||| ||||||||||||
seq2  ATCTGTTCTCAAGACTTGAATCATTATGGTACATTCATTAGTAAAGGTGA  950

seq1  TGGTCCAAAGCAATTGCATAACAC-TAGTGTTTGGTTTCAGAAGCTG-AT  993
      |||||||||||||||||||||||| ||||| || | ||||||||||| ||
seq2  TGGTCCAAAGCAATTGCATAACACTTAGTGGTTTGGTTCAGAAGCTGTAT  1000

seq1  TAAACTTCCAGTGAACAAAGGCCACTGTTCACGCA-CACAGCACTTTTTC  1042
      | ||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAACCTCCAGTGAACAAAGGCCACTGTTCACGCACCACAGCACTTTTTC  1050

seq1  TAATAGAGTTTAATG-ATGTAAAGT  1066
      |||||||| |||||| | |||||||
seq2  TAATAGAG-TTAATGAAGGTAAAGT  1074