BAC Information

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BAC

Clone NameB6Ng01-016F08
Chromosome5 (Build37)
Map Location 84,690,959 - 84,834,373
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016F08.bB6Ng01-016F08.g
ACCDH850324DH850325
length1,0731,102
definitionDH850324|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F08, 5' end.DH850325|Mus musculus domesticus DNA, BAC clone: B6Ng01-016F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,833,284 - 84,834,373)(84,690,959 - 84,692,063)
sequence
gaattcatttctgttatagaaggatctgaattaagaaaatattatttaat
tttaaatgctggataatataaaatgctaacagtttttacccaaaatgagt
tccaaattatggatgtgttatgcagcagtgaggacacaggctccagactt
gggctcagacatttgaagctatgaaccttaggcaaactagacaactcttc
tgcatctacttctggtctgtaaataggaatgttattataatacagtttag
gattgctcaattgagttcatgtctttaaagtgctctgtaaaattgtatgt
cttacaatacgacagtgttacatattacatgttcagaaaccttgggttgg
cattctaacattgaacggggcattaattagtgagtattgtctttatttgt
tgaaaatgaagatgctaaagagtccttatttactcccttggcaaaacttt
tcaacagacctccagaagccataggttacaaatctaaccctaattatgag
tgcacagtagtcactgctttgcttcaggaccatagctcctgtcagtttcc
catcactaagctatggaaggagagtggtttcctcatccttggttacctgg
attctttaaacacaatcagtcacaccccacattatggctagatttttatc
ctgtctctatagatagatttcctcaagtttgagttttcctttccattcct
ggtgtggcctgtcacttgaaattatattttcacttgttcatgcctttctg
atctttatgaagaatggaaaaactttgaaaatacaagttaatcagggaag
cattgctctgaatttggatttgagtacaaacagagaccttatgatttccc
aacgaaaacagtttaattccaacaaactgacagtagaatgtcttatattt
tgcatttctttgatgcatcactgtggagaaagcattatctgtctggaagc
acattgagagccagatctgaaacgtaatctcatctggaacatcaggaagt
aatgcactctataatctatgctgagatgcatactatggagtaatcttagt
gataaagctactatttaacagca
gaattccagaaccactgccttggtaactgtaagtcacaagaggagtaaaa
atattaaagtaatattgtaatttttatttgatattctagcattattattg
ctgcaaatcatttttatcatatcgtttagaaacgatacaatttgtaaaat
tttagagttcaatggaacacaatggatagtcctcttaaatttgttcagtt
ccactgttggttttgaataataacaaaagagttcaaaatcatactgatat
ttgacttctgtatttgtttccaaataacagctatatttgtttctgtaggt
catatcatctacatgtcaattgaatgaactataaattttctactgattta
ttttatagaaaatgaaatcaacacccttattccttcccttttgcctaatg
ttttatcattgataagaaaaataagtcatttttaaaaatggtaaactttc
aaattagtaggagtatcagaaaagacagaagaattgaagtagccaactga
tggccattattacctttaactgggaaaatatataatttagctatttttaa
atataaaagatgaaaaatatgtctaaaataactcattttctcaaagtaga
tgaagagttgcaagatgctaaagacacaaacacatcttggagagggtttg
acagtaatatataaattgcactaagtatgcattttccagaatggcagtaa
tatatatgtcaagacacataacagaatgcttatcaatcttctgttctgtg
acttgcaaaatcaaaaatattaaaaacaatacagtagaatattatactat
aaggaaattgatatgctccaaaattgatttcaaaccataagagtgttaac
agaaagatgttgtaaaattatacatgaaatactgactacattttgaagaa
ttagtatattggcattatgaggtagagactcatacaaaccattacgtatc
tgcacacaaagtaagtgcactaagtagaacaggcaaactttgggatcact
ttactttagagaagttaggaccggtgaaaagattagaagttctcaagtgc
aatttttaaataaaagagccatattacaaaaaagaaaattgactttttcc
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84833284_84834373
seq2: B6Ng01-016F08.b_43_1115 (reverse)

seq1  TGCTGTTAAAAATAGTAGCTTTAAATCACTTAAAGAATTTACTCCATAGT  50
      |||||||  |||||||||||||  ||||||  ||||  ||||||||||||
seq2  TGCTGTT--AAATAGTAGCTTT--ATCACT--AAGA--TTACTCCATAGT  42

seq1  ATGCATTCCTCAAGCATAGATTTATAGAGTGCAATGTACTTCCCTGATGT  100
      ||||||  ||| |||||||| ||||||||||||   ||||| ||||||||
seq2  ATGCAT--CTC-AGCATAGA-TTATAGAGTGCA--TTACTT-CCTGATGT  85

seq1  TCCAGATGGAGAATTACGTTTCAGATCTGGCTCTCAATGTGCTTCCAGAC  150
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAT-GAG-ATTACGTTTCAGATCTGGCTCTCAATGTGCTTCCAGAC  133

seq1  AGATAATGCTTTCTCCACAGTGATGCATCAAAGAAATGCAAAATATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGCTTTCTCCACAGTGATGCATCAAAGAAATGCAAAATATAAGA  183

seq1  CATTCTACTGTCAGTTTGTTGGAATTAAACTGTTTTCGTTGGGAAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACTGTCAGTTTGTTGGAATTAAACTGTTTTCGTTGGGAAATCAT  233

seq1  AAGGTCTCTGTTTGTACTCAAATCCAAATTCAGAGCAATGCTTCCCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCTGTTTGTACTCAAATCCAAATTCAGAGCAATGCTTCCCTGAT  283

seq1  TAACTTGTATTTTCAAAGTTTTTCCATTCTTCATAAAGATCAGAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTATTTTCAAAGTTTTTCCATTCTTCATAAAGATCAGAAAGGCA  333

seq1  TGAACAAGTGAAAATATAATTTCAAGTGACAGGCCACACCAGGAATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGTGAAAATATAATTTCAAGTGACAGGCCACACCAGGAATGGAA  383

seq1  AGGAAAACTCAAACTTGAGGAAATCTATCTATAGAGACAGGATAAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTCAAACTTGAGGAAATCTATCTATAGAGACAGGATAAAAATC  433

seq1  TAGCCATAATGTGGGGTGTGACTGATTGTGTTTAAAGAATCCAGGTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATAATGTGGGGTGTGACTGATTGTGTTTAAAGAATCCAGGTAACC  483

seq1  AAGGATGAGGAAACCACTCTCCTTCCATAGCTTAGTGATGGGAAACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAGGAAACCACTCTCCTTCCATAGCTTAGTGATGGGAAACTGAC  533

seq1  AGGAGCTATGGTCCTGAAGCAAAGCAGTGACTACTGTGCACTCATAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTATGGTCCTGAAGCAAAGCAGTGACTACTGTGCACTCATAATTA  583

seq1  GGGTTAGATTTGTAACCTATGGCTTCTGGAGGTCTGTTGAAAAGTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGATTTGTAACCTATGGCTTCTGGAGGTCTGTTGAAAAGTTTTGC  633

seq1  CAAGGGAGTAAATAAGGACTCTTTAGCATCTTCATTTTCAACAAATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGTAAATAAGGACTCTTTAGCATCTTCATTTTCAACAAATAAAG  683

seq1  ACAATACTCACTAATTAATGCCCCGTTCAATGTTAGAATGCCAACCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCACTAATTAATGCCCCGTTCAATGTTAGAATGCCAACCCAAG  733

seq1  GTTTCTGAACATGTAATATGTAACACTGTCGTATTGTAAGACATACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAACATGTAATATGTAACACTGTCGTATTGTAAGACATACAATT  783

seq1  TTACAGAGCACTTTAAAGACATGAACTCAATTGAGCAATCCTAAACTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGCACTTTAAAGACATGAACTCAATTGAGCAATCCTAAACTGTA  833

seq1  TTATAATAACATTCCTATTTACAGACCAGAAGTAGATGCAGAAGAGTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAACATTCCTATTTACAGACCAGAAGTAGATGCAGAAGAGTTGT  883

seq1  CTAGTTTGCCTAAGGTTCATAGCTTCAAATGTCTGAGCCCAAGTCTGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGCCTAAGGTTCATAGCTTCAAATGTCTGAGCCCAAGTCTGGAG  933

seq1  CCTGTGTCCTCACTGCTGCATAACACATCCATAATTTGGAACTCATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCTCACTGCTGCATAACACATCCATAATTTGGAACTCATTTTG  983

seq1  GGTAAAAACTGTTAGCATTTTATATTATCCAGCATTTAAAATTAAATAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAACTGTTAGCATTTTATATTATCCAGCATTTAAAATTAAATAAT  1033

seq1  ATTTTCTTAATTCAGATCCTTCTATAACAGAAATGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAATTCAGATCCTTCTATAACAGAAATGAATTC  1073

seq1: chr5_84690959_84692063
seq2: B6Ng01-016F08.g_66_1167

seq1  GAATTCCAGAACCACTGCCTTGGTAACTGTAAGTCACAAGAGGAGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCACTGCCTTGGTAACTGTAAGTCACAAGAGGAGTAAAA  50

seq1  ATATTAAAGTAATATTGTAATTTTTATTTGATATTCTAGCATTATTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGTAATATTGTAATTTTTATTTGATATTCTAGCATTATTATTG  100

seq1  CTGCAAATCATTTTTATCATATCGTTTAGAAACGATACAATTTGTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCATTTTTATCATATCGTTTAGAAACGATACAATTTGTAAAAT  150

seq1  TTTAGAGTTCAATGGAACACAATGGATAGTCCTCTTAAATTTGTTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTTCAATGGAACACAATGGATAGTCCTCTTAAATTTGTTCAGTT  200

seq1  CCACTGTTGGTTTTGAATAATAACAAAAGAGTTCAAAATCATACTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTGGTTTTGAATAATAACAAAAGAGTTCAAAATCATACTGATAT  250

seq1  TTGACTTCTGTATTTGTTTCCAAATAACAGCTATATTTGTTTCTGTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTGTATTTGTTTCCAAATAACAGCTATATTTGTTTCTGTAGGT  300

seq1  CATATCATCTACATGTCAATTGAATGAACTATAAATTTTCTACTGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATCTACATGTCAATTGAATGAACTATAAATTTTCTACTGATTTA  350

seq1  TTTTATAGAAAATGAAATCAACACCCTTATTCCTTCCCTTTTGCCTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGAAAATGAAATCAACACCCTTATTCCTTCCCTTTTGCCTAATG  400

seq1  TTTTATCATTGATAAGAAAAATAAGTCATTTTTAAAAATGGTAAACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATTGATAAGAAAAATAAGTCATTTTTAAAAATGGTAAACTTTC  450

seq1  AAATTAGTAGGAGTATCAGAAAAGACAGAAGAATTGAAGTAGCCAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAGGAGTATCAGAAAAGACAGAAGAATTGAAGTAGCCAACTGA  500

seq1  TGGCCATTATTACCTTTAACTGGGAAAATATATAATTTAGCTATTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTATTACCTTTAACTGGGAAAATATATAATTTAGCTATTTTTAA  550

seq1  ATATAAAAGATGAAAAATATGTCTAAAATAACTCATTTTCTCAAAGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGATGAAAAATATGTCTAAAATAACTCATTTTCTCAAAGTAGA  600

seq1  TGAAGAGTTGCAAGATGCTAAAGACACAAACACATCTTGGAGAGGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGTTGCAAGATGCTAAAGACACAAACACATCTTGGAGAGGGTTTG  650

seq1  ACAGTAATATATAAATTGCACTAAGTATGCATTTTCCAGAATGGCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATATATAAATTGCACTAAGTATGCATTTTCCAGAATGGCAGTAA  700

seq1  TATATATGTCAAGACACATAACAGAATGCTTATCAATCTTCTGTTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTCAAGACACATAACAGAATGCTTATCAATCTTCTGTTCTGTG  750

seq1  ACTTGCAAAATCAAAAATATTAAAAACAATACAGTAGAATATTATACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAAATCAAAAATATTAAAAACAATACAGTAGAATATTATACTAT  800

seq1  AAGGAAATTGATATGCTCCAAAATTGATTTCAAAACCATAAGAGTGTTAA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGGAAATTGATATGCTCCAAAATTGATTTC-AAACCATAAGAGTGTTAA  849

seq1  CAGAAAGATGTTGTAAAATTATACATGAAATACTGACTACATTTTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATGTTGTAAAATTATACATGAAATACTGACTACATTTTGAAGA  899

seq1  ATAAGTATATTGGCATTATGAGGTAGAGACTCATACAAACCATTACGTAT  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATATTGGCATTATGAGGTAGAGACTCATACAAACCATTACGTAT  949

seq1  CTGCACACAAAGTAAGTGCACTAAGTAGAAACAGGCAAACTTTGGGATCA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCACACAAAGTAAGTGCACTAAGTAG-AACAGGCAAACTTTGGGATCA  998

seq1  CTTTTAACTTTAGAGAAGTTAGGACCGGTGAAAAGATTAGAAG-TCTCAA  1049
      ||||  ||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTT--ACTTTAGAGAAGTTAGGACCGGTGAAAAGATTAGAAGTTCTCAA  1046

seq1  GTGCAATTTTTAAATAAAAGAGCCATAATAACAAAAAAAGAAAATGAC-T  1098
      |||||||||||||||||||||||||| || ||||||||  ||| |||| |
seq2  GTGCAATTTTTAAATAAAAGAGCCAT-ATTACAAAAAAGAAAATTGACTT  1095

seq1  TTTCCTA  1105
      |||||||
seq2  TTTCCTA  1102