BAC Information

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BAC

Clone NameB6Ng01-016O13
Chromosome5 (Build37)
Map Location 102,317,150 - 102,428,081
singlet/doubletdoublet
Overlap geneWdfy3
Upstream geneA230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneEG666515, EG666527, LOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O13.bB6Ng01-016O13.g
ACCDH850739DH850740
length1,1121,088
definitionDH850739|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O13, 5' end.DH850740|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,317,150 - 102,318,265)(102,426,990 - 102,428,081)
sequence
gaattcctggtcgtggtttccgggtcccagaattaagttccggttcacag
taagcacccggagagaatcgaggagggcgacttgctgagggacggttttg
tgcgcgcgggagaactgatacaggatggtccgattgaggcagtgatacac
tgcatccagcgacaagccctgcgaccgtctcttcgactgaagaaatgaaa
aagatttttttagtaagaggacagaaatgcaaatccccactgtcgttcac
aagcacgctcgcatcggctactacccaagagccatcatgctaagacctcg
gagtgcttggctgaaaaatcctgcgcccttgctgttacggattcagaatc
cccaagacacataaacacaatttaagaatgaagagagtcccgtacaaaca
gcccctgtgcggaggtctcagcacactactccagttaggatgaatggtct
cttatgctgattgaagagttgaccagaactccagtgggagctacgctacg
ctgggcaggggcttcaccccacagttgaaagctgttctctttggcttaac
tataaatgcatgtcttcagagcgaatggtccacccaatcacaccagcaga
accccacacagggcaagggttgcagtagggcatagggaggagagggtttt
ttcttttcatttatttcttaaatctttaaatttgttcataatcaccatat
atcactcatggaactgtgaaaggaaatttgcccttttttttttttaagtt
gtaaattttatttcttctggctagagattttgatctcgggtttcccttcc
caactacttcgattctctccacctactaaactacacaccctttgtttctt
tctttatctttcttgttagaaaacatatgggtcaaagaaacaacccaaac
caaaatgaaaattcactttttacaaggttgggtacacctgagaatattca
ctatctcattggctacatctacttccagtaatttgacacagcagaaatgg
attagccaaagaagacatgtatgtactccagtgaatattgacgatggatt
acctggtgcaatggagtggatgataaatctataagaggttagattctttg
ttgaacatgcct
gaattctctgtaagcattttcccctgcaaatccaaaattattttaaagac
atatgtcatctatttagtcgtttagcaaggatgcatgaatgggaagaagt
aagtcctgtgaagcctcaaatgctttaaatgcaggcagcgtcactagcaa
cacctcagacacaaacagcctttgttatactttttttttaaagatttctt
tattttatgtatatttgagtacatggtagctgtcttcagacacaccagaa
gagggcataggattccattacagatggttgtgagccaccatgtggttgct
gggaattgaactcaggacctttgcaagagcagtcagtgctcttaaccact
gagccatctcatcagcccctgttaaacactttttaatcctagcacttgga
aggctagcggcaggagggtctctgtgagtttaaggccagcctggtctaca
taactacttctgggacatccagggctatatagtgagaccctgtctacaaa
ttttaaaaaaagaaaaagaagaagaagcggaagaaaaggaagaagaaaat
tagggggaaagggaccggggatttccctctcagtcttccccaaaggtggt
tttcaaaatggcctcatgtgaccaacagtgaagtgatgtaattcacacat
agctatctgtggaggccagtcttgtgttcctataatgcttcagggtcaga
ggtatcaattttataccctttcccccggtccccagctctgctctctaggg
ttcatccctcagacctgtcagtgagtccagccctcgctccccacacatga
gactgaagatgcagtttttatttccgtttgtgttggtgactttattgtta
aatcctgttgctgaaccaggagagttataattctgatatgctatctgatc
tagtgataagggccgtttgtatctgcttttgtcgtcagtaatgcgcgggt
atttaaaagtgttttccttgtgcctcataggacttatctatcccaaccac
gtgtccctgctacatgactaaaagatgaaggtattatttaaataaatttt
ggtggaaaatttccggaaaagtctttatctttccgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102317150_102318265
seq2: B6Ng01-016O13.b_48_1159

seq1  GAATTCCTGGTCGTGGTTTCCGGGTCCCAGAATTAAGTTCCGGTTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCGTGGTTTCCGGGTCCCAGAATTAAGTTCCGGTTCACAG  50

seq1  TAAGCACCCGGAGAGAATCGAGGAGGGCGACTTGCTGAGGGACGGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCCGGAGAGAATCGAGGAGGGCGACTTGCTGAGGGACGGTTTTG  100

seq1  TGCGCGCGGGAGAACTGATACAGGATGGTCCGATTGAGGCAGTGATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGCGGGAGAACTGATACAGGATGGTCCGATTGAGGCAGTGATACAC  150

seq1  TGCATCCAGCGACAAGCCCTGCGACCGTCTCTTCGACTGAAGAAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAGCGACAAGCCCTGCGACCGTCTCTTCGACTGAAGAAATGAAA  200

seq1  AAGATTTTTTTAGTAAGAGGACAGAAATGCAAATCCCCACTGTCGTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTAGTAAGAGGACAGAAATGCAAATCCCCACTGTCGTTCAC  250

seq1  AAGCACGCTCGCATCGGCTACTACCCAAGAGCCATCATGCTAAGACCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGCTCGCATCGGCTACTACCCAAGAGCCATCATGCTAAGACCTCG  300

seq1  GAGTGCTTGGCTGAAAAATCCTGCGCCCTTGCTGTTACGGATTCAGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTGGCTGAAAAATCCTGCGCCCTTGCTGTTACGGATTCAGAATC  350

seq1  CCCAAGACACATAAACACAATTTAAGAATGAAGAGAGTCCCGTACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACACATAAACACAATTTAAGAATGAAGAGAGTCCCGTACAAACA  400

seq1  GCCCCTGTGCGGAGGTCTCAGCACACTACTCCAGTTAGGATGAATGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGCGGAGGTCTCAGCACACTACTCCAGTTAGGATGAATGGTCT  450

seq1  CTTATGCTGATTGAAGAGTTGACCAGAACTCCAGTGGGAGCTACGCTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTGATTGAAGAGTTGACCAGAACTCCAGTGGGAGCTACGCTACG  500

seq1  CTGGGCAGGGGCTTCACCCCACAGTTGAAAGCTGTTCTCTTTGGCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGGGCTTCACCCCACAGTTGAAAGCTGTTCTCTTTGGCTTAAC  550

seq1  TATAAATGCATGTCTTCAGAGCGAATGGTCCACCCAATCACACCAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGCATGTCTTCAGAGCGAATGGTCCACCCAATCACACCAGCAGA  600

seq1  ACCCCACACAGGGCAAGGGTTGCAGTAGGGCATAGGGAGGAGAGGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACACAGGGCAAGGGTTGCAGTAGGGCATAGGGAGGAGAGGGTTTT  650

seq1  TTCTTTTCATTTATTTCTTAAATCTTTAAATTTGTTCATAATCACCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCATTTATTTCTTAAATCTTTAAATTTGTTCATAATCACCATAT  700

seq1  ATCACTCATGGAACTGTGAAAGGAAATTTGCCCTTTTTTTTTTTTAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATGGAACTGTGAAAGGAAATTTGCCCTTTTTTTTTTTTAAGTT  750

seq1  GTAAATTTTATTTCTTCTGGCTAGAGATTTTGATCTCGGGTTTTCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAAATTTTATTTCTTCTGGCTAGAGATTTTGATCTCGGGTTTCCCTTCC  800

seq1  CAACTACTTCGATTCTCTCCACCTACTAAACTACACACCCTTTGTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACTTCGATTCTCTCCACCTACTAAACTACACACCCTTTGTTTCTT  850

seq1  TCTTTATCTTTCTTGTTAGAAAACATAT-GGTCAAAGAAACAACCCAAAC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTTATCTTTCTTGTTAGAAAACATATGGGTCAAAGAAACAACCCAAAC  900

seq1  CAAAATGAAAATTCACTTTTTACAAAGTTTGGGTACACCTGAGAATATTC  949
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  CAAAATGAAAATTCACTTTTTAC-AAGGTTGGGTACACCTGAGAATATTC  949

seq1  ACTATCTCATTAGCTACATCTACTTCCAGTAATTTTGACACAGCAGGAAA  999
      ||||||||||| |||||||||||||||||||| |||||||||||| ||||
seq2  ACTATCTCATTGGCTACATCTACTTCCAGTAA-TTTGACACAGCA-GAAA  997

seq1  AGGATTAGCCAAAGAAAGACATGTATGTACTCCAGTGAATAGTGACGATG  1049
       ||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TGGATTAGCCAAAG-AAGACATGTATGTACTCCAGTGAATATTGACGATG  1046

seq1  GATTACCT-GTGCAATGAGTTGAATGATAAAATCTATAAGAAGTTTAGAT  1098
      |||||||| ||||||||   || ||||| ||||||||||| || ||||||
seq2  GATTACCTGGTGCAATGGAGTGGATGAT-AAATCTATAAG-AGGTTAGAT  1094

seq1  TCTTTGTTGAACATGCCT  1116
      ||||||||||||||||||
seq2  TCTTTGTTGAACATGCCT  1112

seq1: chr5_102426990_102428081
seq2: B6Ng01-016O13.g_69_1156 (reverse)

seq1  CTGCGGACAG-TAAAGACTTTTTCCTGTAAATTCTCCACCAAAATTATTT  49
      ||||||| || |||||||||||  | | ||||| ||||||||||||  ||
seq2  CTGCGGAAAGATAAAGACTTTT--CCGGAAATTTTCCACCAAAATTTATT  48

seq1  TAAAT-ATACCATCTTCTATTTAGTCATGTAGCGGGGACACGTGGGTGGG  98
      ||||| ||||| || ||| |||||||||||||| ||||||||||| ||||
seq2  TAAATAATACCTTCATCT-TTTAGTCATGTAGCAGGGACACGTGGTTGGG  97

seq1  AAAGATTAGGTCCTATGAAGCCACAAGG-AAACACTTTTAAATACCCGCG  147
      | ||| || |||||||| || ||||||| |||||||||||||||||||| 
seq2  ATAGA-TAAGTCCTATG-AGGCACAAGGAAAACACTTTTAAATACCCGC-  144

seq1  GCATTACTGACGAC-AAAGCAGATACAAACGGCCCTTATCACTAGATCAG  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATTACTGACGACAAAAGCAGATACAAACGGCCCTTATCACTAGATCAG  194

seq1  ATAGCATATCAGAATTATTAACTCTCCTGGTTCAGCAACAGGATTTAAAC  246
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ATAGCATATCAGAATTA-TAACTCTCCTGGTTCAGCAACAGGATTT-AAC  242

seq1  AATAAAGTTCACCAACACAAACGG-AATAAAAACTGCATCTTCAGTCTCA  295
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  AATAAAG-TCACCAACACAAACGGAAATAAAAACTGCATCTTCAGTCTCA  291

seq1  TGTGTGGGGAGCGAGGGCTGGACTCACTGACAGGTCTGAGGGATGAACCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGGAGCGAGGGCTGGACTCACTGACAGGTCTGAGGGATGAACCC  341

seq1  TAGAGAGCAGAGCTGGGGACCGGGGGAAAGGGTATAAAATTGATACCTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCAGAGCTGGGGACCGGGGGAAAGGGTATAAAATTGATACCTCT  391

seq1  GACCCTGAAGCATTATAGGAACACAAGACTGGCCTCCACAGATAGCTATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGAAGCATTATAGGAACACAAGACTGGCCTCCACAGATAGCTATG  441

seq1  TGTGAATTACATCACTTCACTGTTGGTCACATGAGGCCATTTTGAAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTACATCACTTCACTGTTGGTCACATGAGGCCATTTTGAAAACC  491

seq1  ACCTTTGGGGAAGACTGAGAGGGAAATCCCCGGTCCCTTTCCCCCTAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGGGAAGACTGAGAGGGAAATCCCCGGTCCCTTTCCCCCTAATT  541

seq1  TTCTTCTTCCTTTTCTTCCGCTTCTTCTTCTTTTTCTTTTTTTAAAATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCTTTTCTTCCGCTTCTTCTTCTTTTTCTTTTTTTAAAATTT  591

seq1  GTAGACAGGGTCTCACTATATAGCCCTGGATGTCCCAGAAGTAGTTATGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGGTCTCACTATATAGCCCTGGATGTCCCAGAAGTAGTTATGT  641

seq1  AGACCAGGCTGGCCTTAAACTCACAGAGACCCTCCTGCCGCTAGCCTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTAAACTCACAGAGACCCTCCTGCCGCTAGCCTTCC  691

seq1  AAGTGCTAGGATTAAAAAGTGTTTAACAGGGGCTGATGAGATGGCTCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAGGATTAAAAAGTGTTTAACAGGGGCTGATGAGATGGCTCAGT  741

seq1  GGTTAAGAGCACTGACTGCTCTTGCAAAGGTCCTGAGTTCAATTCCCAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGAGCACTGACTGCTCTTGCAAAGGTCCTGAGTTCAATTCCCAGC  791

seq1  AACCACATGGTGGCTCACAACCATCTGTAATGGAATCCTATGCCCTCTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCATCTGTAATGGAATCCTATGCCCTCTTC  841

seq1  TGGTGTGTCTGAAGACAGCTACCATGTACTCAAATATACATAAAATAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTCTGAAGACAGCTACCATGTACTCAAATATACATAAAATAAAG  891

seq1  AAATCTTTAAAAAAAAAGTATAACAAAGGCTGTTTGTGTCTGAGGTGTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAAAAAAAGTATAACAAAGGCTGTTTGTGTCTGAGGTGTTG  941

seq1  CTAGTGACGCTGCCTGCATTTAAAGCATTTGAGGCTTCACAGGACTTACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGACGCTGCCTGCATTTAAAGCATTTGAGGCTTCACAGGACTTACT  991

seq1  TCTTCCCATTCATGCATCCTTGCTAAACGACTAAATAGATGACATATGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATTCATGCATCCTTGCTAAACGACTAAATAGATGACATATGTC  1041

seq1  TTTAAAATAATTTTGGATTTGCAGGGGAAAATGCTTACAGAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATTTTGGATTTGCAGGGGAAAATGCTTACAGAGAATTC  1088