BAC Information

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BAC

Clone NameB6Ng01-018A11
Chromosome5 (Build37)
Map Location 19,663,145 - 19,776,884
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018A11.bB6Ng01-018A11.g
ACCDH851540DH851541
length1,176718
definitionDH851540|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A11, 5' end.DH851541|Mus musculus domesticus DNA, BAC clone: B6Ng01-018A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,663,145 - 19,664,347)(19,776,167 - 19,776,884)
sequence
gaattcctcaaggaatgaggttacaggtgtccaggaaatcttaaagtaat
aacacttagaattctctaagaacacaatcccagagaaaaagggaataaaa
gaaagtcaggctgagcttaccatagtcagatagatgaaaactgctagaat
ataattaagtgagtatgtctcatggtaaagattctgtcctttgtgatctg
aaaataggcagtaaaaatactgttggatagtcatttagtcacgccaatgt
gcaatgtgccagcgcaatatggaaaggtagagtatctcatttaacacctt
tctagtaaatctatgtgggaaataccaccatgacagtacttgctctgcgg
atgcaataccgtgctcataattgtacacctgcctggagcagagtccaaat
gattaacgtagcccagccgagactacgagttatattattagttctagggt
tcctacttttaggttaatgagtctcaacaatttggcacaatgcagacatt
tttttctttgtgcttaagggaaggagtgcaggaggtggagctgctggtga
cagtctaatcaacacaaacaaaagttggatttaataagacccaaagaaag
aacaagattgaattaagctataatttagactcagaattaataggaaagat
aattatacatacaaccttattgatctttctttacattttctttaatttgg
agtattgtattttaaaggtacctggtgaaacaggtaccattatctgttca
gtcaccttcaaatctaatgtatattttaataacctcaaagcaataattct
actcaaagtagttaccagaagttttagcagagttaaatatctcagaacat
ttctcaatattcttgttctgttcagttctgtatgggttcagaaaaattca
cataattagttttacaaattttgcttaaatttttaagatctcattgaata
tgagcttggaggtaggaaatttaggaagttcttagctgaaacatataact
gacagacttcacatgatttgtttttagttattttttcttgttttactgga
gcctcttgtataaggagattcacgttcagccaaatgttttatacgcataa
gttaaacaggctagagttcacctccgactgccatggtgagtgagtgactg
caagcaacacgctcctgggacaggtc
gaattctcaaaaaactgacagagtgattagctggcaatgcagcttggatg
tgaaataaggacactgcagcactctgcctggcctctgtttctccatggcc
attcatccatccattcagtcagtccttggtggtatagtgatatccaggct
atcatgagattaggaagggttggcactccgtgctttgagcgttgagccaa
aacttcacataaggagaaatacgataggaaaagaataaagtaaccaacac
agtaatgtgctgtggtgggaaaactgctgatatcaaggtcatttccaggc
atctcttggtggttacaagtaccagacctagcacaaaaacattcagagtc
gaagccagcccattgtttgctggacatgtttctgttagctaagcttttac
ccatgcctggggagttttctgatgtcaaatattgattttgtgaggaataa
ggatcaatttttatggccttctagttatttgtattcaattatgtgtgagc
tgatttttttggggggagcttctgtgaagaatgtacacttctaatgctgt
gctataaatggagatttccccttgacttcaaagattcaggagaaaaaacc
caaccagatgagaaattgtcttttaaaccacttatcaaacctttgagaat
attaaaacaatgtagtgtaggtctccaaaggatactgtaggtgggttttt
ttttgaggggtgtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19663145_19664347
seq2: B6Ng01-018A11.b_43_1218

seq1  GAATTCCTCAAGGAATGAGGTTACAGGTGTCCAGGAAATCTTAAAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAGGAATGAGGTTACAGGTGTCCAGGAAATCTTAAAGTAAT  50

seq1  AACACTTAGAATTCTCTAAGAACACAATCCCAGAGAAAAAGGGAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTAGAATTCTCTAAGAACACAATCCCAGAGAAAAAGGGAATAAAA  100

seq1  GAAAGTCAGGCTGAGCTTACCATAGTCAGATAGATGAAAACTGCTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAGGCTGAGCTTACCATAGTCAGATAGATGAAAACTGCTAGAAT  150

seq1  ATAATTAAGTGAGTATGTCTCATGGTAAAGATTCTGTCCTTTGTGATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAGTGAGTATGTCTCATGGTAAAGATTCTGTCCTTTGTGATCTG  200

seq1  AAAATAGGCAGTAAAAATACTGTTGGATAGTCATTTAGTCACGCCAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGCAGTAAAAATACTGTTGGATAGTCATTTAGTCACGCCAATGT  250

seq1  GCAATGTGCCAGCGCAATATGGAAAGGTAGAGTATCTCATTTAACACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGCCAGCGCAATATGGAAAGGTAGAGTATCTCATTTAACACCTT  300

seq1  TCTAGTAAATCTATGTGGGAAATACCACCATGACAGTACTTGCTCTGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAATCTATGTGGGAAATACCACCATGACAGTACTTGCTCTGCGG  350

seq1  ATGCAATACCGTGCTCATAATTGTACACCTGCCTGGAGCAGAGTCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACCGTGCTCATAATTGTACACCTGCCTGGAGCAGAGTCCAAAT  400

seq1  GATTAACGTAGCCCAGCCGAGACTACGAGTTATATTATTAGTTCTAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACGTAGCCCAGCCGAGACTACGAGTTATATTATTAGTTCTAGGGT  450

seq1  TCCTACTTTTAGGTTAATGAGTCTCAACAATTTGGCACAATGCAGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTTAGGTTAATGAGTCTCAACAATTTGGCACAATGCAGACATT  500

seq1  TTTTTCTTTGTGCTTAAGGGAAGGAGTGCAGGAGGTGGAGCTGCTGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGTGCTTAAGGGAAGGAGTGCAGGAGGTGGAGCTGCTGGTGA  550

seq1  CAGTCTAATCAACACAAACAAAAGTTGGATTTAATAAGACCCAAAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAATCAACACAAACAAAAGTTGGATTTAATAAGACCCAAAGAAAG  600

seq1  AACAAGATTGAATTAAGCTATAATTTAGACTCAGAATTAATAGGAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTGAATTAAGCTATAATTTAGACTCAGAATTAATAGGAAAGAT  650

seq1  AATTATACATACAACCTTATTGATCTTTCTTTACATTTTCTTTAATTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACATACAACCTTATTGATCTTTCTTTACATTTTCTTTAATTTGG  700

seq1  AGTATTGTATTTTAAAGGTACCTGGTGAAACAGGTACCATTATCTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTATTTTAAAGGTACCTGGTGAAACAGGTACCATTATCTGTTCA  750

seq1  GTCACCTTCAAATCTAATGTATATTTTAATAACCTCAAAGCAATAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTTCAAATCTAATGTATATTTTAATAACCTCAAAGCAATAATTCT  800

seq1  ACTCAAAGTAGTTACCAGAAGTTTTAGCAGAGTTAAATATCTCAGAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGTAGTTACCAGAAGTTTTAGCAGAGTTAAATATCTCAGAACAT  850

seq1  TTCTCAATATTCTTGTTCTGTTCAGTTCTGTATGGGTTCAGAAAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTCAATATTCTTGTTCTGTTCAGTTCTGTATGGGTTCAG-AAAAATTC  899

seq1  ACATAATTAGTTTTACAAATTTTGCTTAAAATTTTTAAGAATCTCATTGA  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||| 
seq2  ACATAATTAGTTTTACAAATTTTGCTT-AAATTTTTAAG-ATCTCATTG-  946

seq1  AATATGAGCTTGGAGGTTAGGAAATTTAGGAAAGTTCTTTAAGCTGAAAC  1000
      |||||||||||||||| ||||||||||||| ||||||||  |||||||||
seq2  AATATGAGCTTGGAGG-TAGGAAATTTAGG-AAGTTCTT--AGCTGAAAC  992

seq1  ATATAACTGACAAGAACTTCACATGATATGTATTTTAGTTTATTTTTTCT  1050
      ||||||||||||   |||||||||||| ||| |||||| |||||||||||
seq2  ATATAACTGACA--GACTTCACATGATTTGT-TTTTAG-TTATTTTTTCT  1038

seq1  TGTTTTTACTGGAAGCCTCATGTATTAGGAAGATTCAACGTTCAGGCTAA  1100
      || ||||||||| |||||| ||||| ||| |||||| ||||||| || ||
seq2  TG-TTTTACTGG-AGCCTCTTGTATAAGG-AGATTC-ACGTTCA-GCCAA  1083

seq1  ATGTATTATCAGCATAAAGTTAAAACCAGGCTAGAGGTCACCTCACGGAC  1150
      |||| ||||  |||| ||||||||  |||||||||| ||||||  | |||
seq2  ATGTTTTATACGCAT-AAGTTAAA--CAGGCTAGAGTTCACCT--CCGAC  1128

seq1  TGCAAAGGGTGAGTGAGTAGACTGCAGAAGCAACACAGCTTCTGGGACAG  1200
      |||  | ||||||||||| ||||||  ||||||||| ||| |||||||||
seq2  TGC-CATGGTGAGTGAGT-GACTGC--AAGCAACAC-GCTCCTGGGACAG  1173

seq1  GTC  1203
      |||
seq2  GTC  1176

seq1: chr5_19776167_19776884
seq2: B6Ng01-018A11.g_70_787 (reverse)

seq1  CCCCCACACCCCTCAAAAAAAAACCCACCTACAGTATCCTTTGGAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACCCCTCAAAAAAAAACCCACCTACAGTATCCTTTGGAGACCT  50

seq1  ACACTACATTGTTTTAATATTCTCAAAGGTTTGATAAGTGGTTTAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATTGTTTTAATATTCTCAAAGGTTTGATAAGTGGTTTAAAAGA  100

seq1  CAATTTCTCATCTGGTTGGGTTTTTTCTCCTGAATCTTTGAAGTCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTCATCTGGTTGGGTTTTTTCTCCTGAATCTTTGAAGTCAAGGG  150

seq1  GAAATCTCCATTTATAGCACAGCATTAGAAGTGTACATTCTTCACAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCCATTTATAGCACAGCATTAGAAGTGTACATTCTTCACAGAAG  200

seq1  CTCCCCCCAAAAAAATCAGCTCACACATAATTGAATACAAATAACTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCAAAAAAATCAGCTCACACATAATTGAATACAAATAACTAGAA  250

seq1  GGCCATAAAAATTGATCCTTATTCCTCACAAAATCAATATTTGACATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAAATTGATCCTTATTCCTCACAAAATCAATATTTGACATCAG  300

seq1  AAAACTCCCCAGGCATGGGTAAAAGCTTAGCTAACAGAAACATGTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCCCAGGCATGGGTAAAAGCTTAGCTAACAGAAACATGTCCAGC  350

seq1  AAACAATGGGCTGGCTTCGACTCTGAATGTTTTTGTGCTAGGTCTGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGGGCTGGCTTCGACTCTGAATGTTTTTGTGCTAGGTCTGGTAC  400

seq1  TTGTAACCACCAAGAGATGCCTGGAAATGACCTTGATATCAGCAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACCACCAAGAGATGCCTGGAAATGACCTTGATATCAGCAGTTTTC  450

seq1  CCACCACAGCACATTACTGTGTTGGTTACTTTATTCTTTTCCTATCGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAGCACATTACTGTGTTGGTTACTTTATTCTTTTCCTATCGTAT  500

seq1  TTCTCCTTATGTGAAGTTTTGGCTCAACGCTCAAAGCACGGAGTGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTATGTGAAGTTTTGGCTCAACGCTCAAAGCACGGAGTGCCAAC  550

seq1  CCTTCCTAATCTCATGATAGCCTGGATATCACTATACCACCAAGGACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAATCTCATGATAGCCTGGATATCACTATACCACCAAGGACTGA  600

seq1  CTGAATGGATGGATGAATGGCCATGGAGAAACAGAGGCCAGGCAGAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGATGGATGAATGGCCATGGAGAAACAGAGGCCAGGCAGAGTGC  650

seq1  TGCAGTGTCCTTATTTCACATCCAAGCTGCATTGCCAGCTAATCACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTCCTTATTTCACATCCAAGCTGCATTGCCAGCTAATCACTCTG  700

seq1  TCAGTTTTTTGAGAATTC  718
      ||||||||||||||||||
seq2  TCAGTTTTTTGAGAATTC  718