BAC Information

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BAC

Clone NameB6Ng01-018N05
Chromosome5 (Build37)
Map Location 5,987,532 - 6,168,084
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N05.bB6Ng01-018N05.g
ACCDH852114DH852115
length1,0541,030
definitionDH852114|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N05, 5' end.DH852115|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,167,030 - 6,168,084)(5,987,532 - 5,988,573)
sequence
gaattcacagttttcctggatgataaacatttcttagcatttaagtgaat
tgttaggaaagagcaaatgctctaatgaaaactttatataaactcttggt
tgattctctatgaaaagaattcatcaaaaagaagtaattaatcctctcaa
catcatcagtgccggagattactaatcaccagcttttcctagctttattt
gggctaattaacaaacttggtatgtttatgatactattctcagctaaact
ttaataggattctacaactcaggaaatgaggccaacaattgacaatgaga
attcacaaaattaaaaaccttctgcacagtaaagcaaactgttatctggg
tgaagagatggtcttcagaataggatagaatcactgccagttacacactg
acaaaggagtgacatctagaatattgaaagagctgaaaataaactaaaca
agaaaccagcacaattaaatattggactaggaactaaggagtgttttcaa
aagagacacaaatggccaataaatatacttttaatttgttcaacatcctt
agccatcagggaaatgcaaattgaaactattttgtaattctatcataccc
caatcaaagtggtgatcaccatgaaaataaatgacagcaatgctggtgag
gatttagggaaagagaaattctttttctctgttagtaggagtattgtgga
agtttctcaaaaacataaatttacagacatttttaaaaaataatattcaa
cttcatatggaaacacaatatatctaagagagttaaaatatcctgaataa
tgaaagaagtgctgggtttatcattgttcaaactgttttatagagttatg
gcaacaaaatgctacaacagatgacattactgatttggtggaatcaaact
aaactcttagacgtaattccacacctacagacacattgctttttaacaaa
ctctacataccacaaaaaatccaggtgaataatgaactacaacataagaa
agtatcgaatatgttacatttattgtctggagaaaggattctctgaacag
gatt

gaattctgacttttatacaaggaaggagatgagaaacttaaccagctccc
aagtgatgctccaggcagtagagtttctgctgtgaaaaaaaaaatggcaa
aagttaggcttgtattctgacagagagtgatggattaccaactggaaaca
ataccatattgtacatcaacctctgtcagcaagctgcagaaaataaatca
agaaagatgatacagagttgtgtggagtggtctaaaatgaaatttcaaat
gttgtgtttaggaatgctgtgaaaattaccttgcactgagcaggtgactg
gttccttcaaatatttgaaaagcatcctgaccggaggaatgcaaatagaa
atgcaatgagatgaggggcgtggctgtgtcttccaggagtagcacactgg
ctcacacactggaaactttggacagcagatggatgggcatagatggtgag
agatgattatgccagactggcatgagaaatgcagagttggaggtgtattt
tggaagagaggactagaaagtcttgattatgaattacatctgagccagaa
gagttaaacatgaataagacatttatttgactttagataccaaatggctg
aagttgccacttactatgatgggaagactacggaggaaaaccatgtgact
agacattgactggcctctgagaatttgcaagtacagatgttccaggcaaa
atgaggtagaacattggaacaatgatttgagagaatctgaggcagttgat
gtggtgtttcatgcacaggaagggtttgtgcctcttactttctattctta
gaaaatacacacttgttctataatattaagagaggtattttttattttga
atgctttaaacaatttatctattaactgtcaaagatagttgtttgagaaa
aagatacttcattattgctagcaaaattattgagagatttttcctagact
ctgcctgaaaaaggtcaaaattggcactcccatcactcctccttatctta
ttatactcctccctgtcaagccatctaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6167030_6168084
seq2: B6Ng01-018N05.b_47_1100 (reverse)

seq1  AATCCTGTTCAGAGAATCCTTTCTCAGGACAATAAATGTAAACATATTCG  50
      |||||||||||||||||||||||||  |||||||||||| ||||||||||
seq2  AATCCTGTTCAGAGAATCCTTTCTCCAGACAATAAATGT-AACATATTCG  49

seq1  CTACTTTCTCTATGTTGTAGTTCTTTATTCACCTGGATTTTTTGTTGGTA  100
       |||||||| ||||||||||||| |||||||||||||||||||| |||||
seq2  ATACTTTCT-TATGTTGTAGTTCATTATTCACCTGGATTTTTTG-TGGTA  97

seq1  TGTAGAGTTTGTTAAAAAGC-ATGTGTCTGTAGGTGTGGAATTACGTCTA  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTAGAGTTTGTTAAAAAGCAATGTGTCTGTAGGTGTGGAATTACGTCTA  147

seq1  AGAGTTTAGTTTGATTCCACC-AATCAGT-ATGTCATCTGTTGTAGCATT  197
      ||||||||||||||||||||| ||||||| |||||||||||||||||| |
seq2  AGAGTTTAGTTTGATTCCACCAAATCAGTAATGTCATCTGTTGTAGCA-T  196

seq1  TTTGTTGCCATAACTCTATAATACAGTTTGAACAATGATAAACCCAGCAC  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGTTGCCATAACTCTATAAAACAGTTTGAACAATGATAAACCCAGCAC  246

seq1  TTCTTTCATTATTCAGGATATTTTAACTCTCTTAGATATATTGTGTTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTATTCAGGATATTTTAACTCTCTTAGATATATTGTGTTTCC  296

seq1  ATATGAAGTTGAATATTATTTTTTAAAAATGTCTGTAAATTTATGTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTTGAATATTATTTTTTAAAAATGTCTGTAAATTTATGTTTTT  346

seq1  GAGAAACTTCCACAATACTCCTACTAACAGAGAAAAAGAATTTCTCTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTCCACAATACTCCTACTAACAGAGAAAAAGAATTTCTCTTTC  396

seq1  CCTAAATCCTCACCAGCATTGCTGTCATTTATTTTCATGGTGATCACCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCCTCACCAGCATTGCTGTCATTTATTTTCATGGTGATCACCAC  446

seq1  TTTGATTGGGGTATGATAGAATTACAAAATAGTTTCAATTTGCATTTCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGGGTATGATAGAATTACAAAATAGTTTCAATTTGCATTTCCC  496

seq1  TGATGGCTAAGGATGTTGAACAAATTAAAAGTATATTTATTGGCCATTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTAAGGATGTTGAACAAATTAAAAGTATATTTATTGGCCATTTG  546

seq1  TGTCTCTTTTGAAAACACTCCTTAGTTCCTAGTCCAATATTTAATTGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTTGAAAACACTCCTTAGTTCCTAGTCCAATATTTAATTGTGC  596

seq1  TGGTTTCTTGTTTAGTTTATTTTCAGCTCTTTCAATATTCTAGATGTCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTGTTTAGTTTATTTTCAGCTCTTTCAATATTCTAGATGTCAC  646

seq1  TCCTTTGTCAGTGTGTAACTGGCAGTGATTCTATCCTATTCTGAAGACCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCAGTGTGTAACTGGCAGTGATTCTATCCTATTCTGAAGACCA  696

seq1  TCTCTTCACCCAGATAACAGTTTGCTTTACTGTGCAGAAGGTTTTTAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCACCCAGATAACAGTTTGCTTTACTGTGCAGAAGGTTTTTAATT  746

seq1  TTGTGAATTCTCATTGTCAATTGTTGGCCTCATTTCCTGAGTTGTAGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATTCTCATTGTCAATTGTTGGCCTCATTTCCTGAGTTGTAGAAT  796

seq1  CCTATTAAAGTTTAGCTGAGAATAGTATCATAAACATACCAAGTTTGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAAGTTTAGCTGAGAATAGTATCATAAACATACCAAGTTTGTTA  846

seq1  ATTAGCCCAAATAAAGCTAGGAAAAGCTGGTGATTAGTAATCTCCGGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCAAATAAAGCTAGGAAAAGCTGGTGATTAGTAATCTCCGGCAC  896

seq1  TGATGATGTTGAGAGGATTAATTACTTCTTTTTGATGAATTCTTTTCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGTTGAGAGGATTAATTACTTCTTTTTGATGAATTCTTTTCATA  946

seq1  GAGAATCAACCAAGAGTTTATATAAAGTTTTCATTAGAGCATTTGCTCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAACCAAGAGTTTATATAAAGTTTTCATTAGAGCATTTGCTCTT  996

seq1  TCCTAACAATTCACTTAAATGCTAAGAAATGTTTATCATCCAGGAAAACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACAATTCACTTAAATGCTAAGAAATGTTTATCATCCAGGAAAACT  1046

seq1  GTGAATTC  1055
      ||||||||
seq2  GTGAATTC  1054


seq1: chr5_5987532_5988573
seq2: B6Ng01-018N05.g_67_1096

seq1  GAATTCTGACTTTTATACAAGGAAGGAGATGAGAAACTTAACCAGCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTTTTATACAAGGAAGGAGATGAGAAACTTAACCAGCTCCC  50

seq1  AAGTGATGCTCCAGGCAGTAGAGTTTCTGCTGTGAAAAAAAAAATGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGCTCCAGGCAGTAGAGTTTCTGCTGTGAAAAAAAAAATGGCAA  100

seq1  AAGTTAGGCTTGTATTCTGACAGAGAGTGATGGATTACCAACTGGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGCTTGTATTCTGACAGAGAGTGATGGATTACCAACTGGAAACA  150

seq1  ATACCATATTGTACATCAACCTCTGTCAGCAAGCTGCAGAAAATAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATATTGTACATCAACCTCTGTCAGCAAGCTGCAGAAAATAAATCA  200

seq1  AGAAAGATGATACAGAGTTGTGTGGAGTGGTCTAAAATGAAATTTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGATACAGAGTTGTGTGGAGTGGTCTAAAATGAAATTTCAAAT  250

seq1  GTTGTGTTTAGGAATGCTGTGAAAATTACCTTGCACTGAGCAGGTGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTAGGAATGCTGTGAAAATTACCTTGCACTGAGCAGGTGACTG  300

seq1  GTTCCTTCAAATATTTGAAAAGCATCCTGACCGGAGGAATGCAAATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCAAATATTTGAAAAGCATCCTGACCGGAGGAATGCAAATAGAA  350

seq1  ATGCAATGAGATGAGGGGCGTGGCTGTGTCTTCCAGGAGTAGCACACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGAGATGAGGGGCGTGGCTGTGTCTTCCAGGAGTAGCACACTGG  400

seq1  CTCACACACTGGAAACTTTGGACAGCAGATGGATGGGCATAGATGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACTGGAAACTTTGGACAGCAGATGGATGGGCATAGATGGTGAG  450

seq1  AGATGATTATGCCAGACTGGCATGAGAAATGCAGAGTTGGAGGTGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTATGCCAGACTGGCATGAGAAATGCAGAGTTGGAGGTGTATTT  500

seq1  TGGAAGAGAGGACTAGAAAGTCTTGATTATGAATTACATCTGAGCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGAGGACTAGAAAGTCTTGATTATGAATTACATCTGAGCCAGAA  550

seq1  GAGTTAAACATGAATAAGACATTTATTTGACTTTAGATACCAAATGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAACATGAATAAGACATTTATTTGACTTTAGATACCAAATGGCTG  600

seq1  AAGTTGCCACTTACTATGATGGGAAGACTACGGAGGAAAACCATGTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCCACTTACTATGATGGGAAGACTACGGAGGAAAACCATGTGACT  650

seq1  AGACATTGACTGGCCTCTGAGAATTTGCAAGTACAGATGTTCCAGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGACTGGCCTCTGAGAATTTGCAAGTACAGATGTTCCAGGCAAA  700

seq1  ATGAGGTAGAACATTGGAACAATGATTTGAGAGAATCTGAGGCAGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAGAACATTGGAACAATGATTTGAGAGAATCTGAGGCAGTTGAT  750

seq1  GTGGTGTTTCATGCACAGGAAGGGTTTGTGCCTCTTACTTTCTATTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTTTCATGCACAGGAAGGGTTTGTGCCTCTTACTTTCTATTCTTA  800

seq1  GAAAATACACACTTGTTCTATAATATTAAGAGAGGTATTTTTTATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACACACTTGTTCTATAATATTAAGAGAGGTATTTTTTATTTTGA  850

seq1  ATGCTTTAAACTAATTTATCTATTAAACTGTCAAAGAAAAGTTGTTTGAG  900
      ||||||||||| |||||||||||| ||||||||||| | |||||||||||
seq2  ATGCTTTAAAC-AATTTATCTATT-AACTGTCAAAG-ATAGTTGTTTGAG  897

seq1  AAAAAGATACTTCATAAATGCTAAGCAAAATTAATTGAGAGATTATTTCC  950
      ||||||||||||||| | |||| ||||||||| ||||||||||| |||||
seq2  AAAAAGATACTTCATTATTGCT-AGCAAAATT-ATTGAGAGATT-TTTCC  944

seq1  TAGACTCTGCCTGAGAAAGGTCAAAATCTGGCACTCCCATCAGCTCTTCC  1000
      |||||||||||||| |||||||||||| |||||||||||||| ||| |||
seq2  TAGACTCTGCCTGAAAAAGGTCAAAAT-TGGCACTCCCATCA-CTCCTCC  992

seq1  TTATTCTTATTTAAACTCCTCCCTGTCTAAGCCCATCTAATT  1042
      ||| ||||| ||| ||||||||||||| ||| ||||||||||
seq2  TTA-TCTTA-TTATACTCCTCCCTGTC-AAG-CCATCTAATT  1030


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