BAC Information

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BAC

Clone NameB6Ng01-023I04
Chromosome5 (Build37)
Map Location 10,411,389 - 10,412,192
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream gene9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832, LOC381612
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023I04.bB6Ng01-023I04.g
ACCDH855410DH855411
length8031,182
definitionDH855410|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I04, 5' end.DH855411|Mus musculus domesticus DNA, BAC clone: B6Ng01-023I04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttattcaggctacacattctattttctcaactagaagttattt
ttctgctctaacaaaataaccatctaaaaattaatgtctgtggagaatag
gagtgtttttaagcactcttcagtctcttattatctgcacatttatgtgt
tgtgagtttttgtattaaatattattcactgaaataagaatcttctagcg
tgagggctgggtaatgctttaatcatgccctaaaccctaagattcatgca
tgtttgtggaagaggggttggaaaaattataagagactgagctggtggat
aagtgcaaggaagcagtgctttacataaacaagagggcagatgtacaaat
gaactaaagatactgtcacagattgcttaagacctattcaagctcaaatc
agacaaattccaaacatgaacttgggatgtgggggcaggtcacctccttg
agctgaggaggtgcgaacatttgatagatgcttgaaaaggtacatcagtt
ttccttatgacctctggtaggttgacgatgctttattataatccataaca
tctaagagtacttgggcaataaatattggagtctgtggattaaccaaagt
caacaaaaagacaacaagaaatagaaagtgtaggaaggtagaagtggata
tggaaggaggtagggtataaaaagtcaatatgattggaatacatcacatg
aattctcaaaaaaataataaaaattcaaaagaaaaaagaaaaaggggacc
agggaaaataaaacttaagaatgattagcaatagtagtaaatataattca
aaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
tggaggagctagagaaagtagccaagagctaaagggatctgcaaccttat
aggtggaacaacattatgagctaaccagtacccggagctctgactctagc
tgcatatatatcaaaagaatggcctagttcgcatcactggaaagaaaggc
ccaattgaacttgcaaactttaatgccaagtctgggaatatcaaggccaa
aaaaggggagtggtgccagcgaagtggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10411389_10412192
seq2: B6Ng01-023I04.b_45_847

seq1  GAATTCTTTATTCAGGCTACACATTCTATTTTCTCAACTAGAAGTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCAGGCTACACATTCTATTTTCTCAACTAGAAGTTATTT  50

seq1  TTCTGCTCTAACAAAATAACCATCTAAAAATTAATGTCTGTGGAGAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTAACAAAATAACCATCTAAAAATTAATGTCTGTGGAGAATAG  100

seq1  GAGTGTTTTTAAGCACTCTTCAGTCTCTTATTATCTGCACATTTATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTTAAGCACTCTTCAGTCTCTTATTATCTGCACATTTATGTGT  150

seq1  TGTGAGTTTTTGTATTAAATATTATTCACTGAAATAAGAATCTTCTAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTTTGTATTAAATATTATTCACTGAAATAAGAATCTTCTAGCG  200

seq1  TGAGGGCTGGGTAATGCTTTAATCATGCCCTAAACCCTAAGATTCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTGGGTAATGCTTTAATCATGCCCTAAACCCTAAGATTCATGCA  250

seq1  TGTTTGTGGAAGAGGGGTTGGAAAAATTATAAGAGACTGAGCTGGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGGAAGAGGGGTTGGAAAAATTATAAGAGACTGAGCTGGTGGAT  300

seq1  AAGTGCAAGGAAGCAGTGCTTTACATAAACAAGAGGGCAGATGTACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAGGAAGCAGTGCTTTACATAAACAAGAGGGCAGATGTACAAAT  350

seq1  GAACTAAAGATACTGTCACAGATTGCTTAAGACCTATTCAAGCTCAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGATACTGTCACAGATTGCTTAAGACCTATTCAAGCTCAAATC  400

seq1  AGACAAATTCCAAACATGAACTTGGGATGTGGGGGCAGGTCACCTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATTCCAAACATGAACTTGGGATGTGGGGGCAGGTCACCTCCTTG  450

seq1  AGCTGAGGAGGTGCGAACATTTGATAGATGCTTGAAAAGGTACATCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAGGTGCGAACATTTGATAGATGCTTGAAAAGGTACATCAGTT  500

seq1  TTCCTTATGACCTCTGGTAGGTTGACGATGCTTTATTATAATCCATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATGACCTCTGGTAGGTTGACGATGCTTTATTATAATCCATAACA  550

seq1  TCTAAGAGTACTTGGGCAATAAATATTGGAGTCTGTGGATTAACCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGTACTTGGGCAATAAATATTGGAGTCTGTGGATTAACCAAAGT  600

seq1  CAACAAAAAGACAACAAGAAATAGAAAGTGTAGGAAGGTAGAAGTGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAGACAACAAGAAATAGAAAGTGTAGGAAGGTAGAAGTGGATA  650

seq1  TGGAAGGAGGTAGGGTATAAAAAGTCAATATGATTGGAATACATCACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGGTAGGGTATAAAAAGTCAATATGATTGGAATACATCACATG  700

seq1  AATTCTC-AAAAAATAATAAAATATTCAAAAGAAAAAAGAAAAAGGGGAC  749
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  AATTCTCAAAAAAATAATAAAA-ATTCAAAAGAAAAAAGAAAAAGGGGAC  749

seq1  CAGGGAAAATAAAACTTAAGAATGAATAGCAATAGTAGTTAATGATAATT  799
      ||||||||||||||||||||||||| ||||||||||||| ||| ||||||
seq2  CAGGGAAAATAAAACTTAAGAATGATTAGCAATAGTAGTAAAT-ATAATT  798

seq1  CAAGA  804
      ||| |
seq2  CAAAA  803