BAC Information

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BAC

Clone NameB6Ng01-024D12
Chromosome5 (Build37)
Map Location 66,172,218 - 66,299,023
singlet/doubletdoublet
Overlap geneB3bp, LOC100041809, Rhoh
Upstream geneKlf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261
Downstream geneLOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024D12.bB6Ng01-024D12.g
ACCDH855922DH855923
length2341,046
definitionDH855922|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D12, 5' end.DH855923|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,172,218 - 66,172,451)(66,297,974 - 66,299,023)
sequence
gaattctctatgtaaactgggctgcctctaaactcacagagatatgcctg
tttctgcttctcagagtgctgggattgaaagcatgagccactgtgcctgg
ctaacaaatgtattttgtaaagtgcctaagaggtgtgtgtgtgtgtggtg
gggaaggagttaagagctgctgctgaggtagcagcttccagtcctagcat
tctgccagtgaagctaacacaggtgctaatggat
gaattcttcttagaagtcccctttgagggacacagtttgttttatcatgc
atggaccccaaatcagttcagggtagatcaacctttctacttgtgttagt
gacttttcttttcctttgaagagacaccctgaccaagacaacttatggaa
gaaaccatttagctagggctcacttccagaggggagtaaagttcatgatc
atcatggtgcagaatatagcagtgggcaggtaggcatggttctggaacag
tagtcgagagtgtacatgttgagacattgccagcaatgaggcagagagag
gcagagagagaggcagaggcggagaggcagagacggagaggcagagacgg
agaggcagagacggagaggcagagacggagaggcagagacggagaggcag
agacggagaggcagagacggagaggcagagacggagacggagagggagac
ccttagagggtcatggggcatagctatttctttctcttaccaatgtggcc
acattgaagtctactttctctacttttcactattacttgtctttttagtt
ggccaacaaaggatggtggctgagcctagcttgttagaggctctaacctt
aactctagcaagaggatcacctgaatgcttggcttataacagacaatcaa
tgaatgtttatctagtgaatgaacaaactttactattagagaagtgaata
agcttgttcagtgctgctcaaatagtctgtattccagtgcaagtctgttt
tgctaaaaatcccttcccttgaacagatataaacaatatctactgtccca
tcaacaaaccaagacatagttacaccaaagttctctcctcccctccccca
accaggagataaataggtttattgggcattcttaggaagcaattgatgag
ggatatgggtgaccctaaagtagccacactggcagctccataccacaggg
atgattgctgaatggagccctccattctccccacagagaccaactgcagt
taaggcagaactacttatagtggtttgtagggagggatgcctggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66172218_66172451
seq2: B6Ng01-024D12.b_43_276

seq1  GAATTCTCTATGTAAACTGGGCTGCCTCTAAACTCACAGAGATATGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAAACTGGGCTGCCTCTAAACTCACAGAGATATGCCTG  50

seq1  TTTCTGCTTCTCAGAGTGCTGGGATTGAAAGCATGAGCCACTGTGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTCTCAGAGTGCTGGGATTGAAAGCATGAGCCACTGTGCCTGG  100

seq1  CTAACAAATGTATTTTGTAAAGTGCCTAAGAGGTGTGTGTGTGTGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAATGTATTTTGTAAAGTGCCTAAGAGGTGTGTGTGTGTGTGGTG  150

seq1  GGGAAGGAGTTAAGAGCTGCTGCTGAGGTAGCAGCTTCCAGTCCTAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGTTAAGAGCTGCTGCTGAGGTAGCAGCTTCCAGTCCTAGCAT  200

seq1  TCTGCCAGTGAAGCTAACACAGGTGCTAAGGGAT  234
      ||||||||||||||||||||||||||||| ||||
seq2  TCTGCCAGTGAAGCTAACACAGGTGCTAATGGAT  234

seq1: chr5_66297974_66299023
seq2: B6Ng01-024D12.g_70_1115 (reverse)

seq1  ATCCAGCCATCCCTCCCTACCAACCACTTATAAGTAGTTCTGCCCTAACT  50
      |||||| ||||||||||||| |||||| |||||||||||||||| |||||
seq2  ATCCAGGCATCCCTCCCTACAAACCAC-TATAAGTAGTTCTGCCTTAACT  49

seq1  GCAGTTGGTCTTCTGTGGGGAAGAATGGAGGGCTCCATTCAGCCATCATC  100
      |||||||||| ||||||||| |||||||||||||||||||||| ||||||
seq2  GCAGTTGGTC-TCTGTGGGG-AGAATGGAGGGCTCCATTCAGCAATCATC  97

seq1  CCTGGTGGTATGGAGCTGCCAGTGTGGCTACTTTAGGGTCACCCATATCC  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT-GTGGTATGGAGCTGCCAGTGTGGCTACTTTAGGGTCACCCATATCC  146

seq1  CTCATCAATTGCTTCCTAAGAATGCCCAATAAACCTATTTATCTCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAATTGCTTCCTAAGAATGCCCAATAAACCTATTTATCTCCTGGT  196

seq1  TGGGGGAGGGGAGGAGAGAACTTTGGTGTAACTATGTCTTGGTTTGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGAGGAGAGAACTTTGGTGTAACTATGTCTTGGTTTGTTGA  246

seq1  TGGGACAGTAGATATTGTTTATATCTGTTCAAGGGAAGGGATTTTTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGTAGATATTGTTTATATCTGTTCAAGGGAAGGGATTTTTAGCA  296

seq1  AAACAGACTTGCACTGGAATACAGACTATTTGAGCAGCACTGAACAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTTGCACTGGAATACAGACTATTTGAGCAGCACTGAACAAGCT  346

seq1  TATTCACTTCTCTAATAGTAAAGTTTGTTCATTCACTAGATAAACATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTCTCTAATAGTAAAGTTTGTTCATTCACTAGATAAACATTCA  396

seq1  TTGATTGTCTGTTATAAGCCAAGCATTCAGGTGATCCTCTTGCTAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCTGTTATAAGCCAAGCATTCAGGTGATCCTCTTGCTAGAGTT  446

seq1  AAGGTTAGAGCCTCTAACAAGCTAGGCTCAGCCACCATCCTTTGTTGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGAGCCTCTAACAAGCTAGGCTCAGCCACCATCCTTTGTTGGCC  496

seq1  AACTAAAAAGACAAGTAATAGTGAAAAGTAGAGAAAGTAGACTTCAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAAGACAAGTAATAGTGAAAAGTAGAGAAAGTAGACTTCAATGT  546

seq1  GGCCACATTGGTAAGAGAAAGAAATAGCTATGCCCCATGACCCTCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTGGTAAGAGAAAGAAATAGCTATGCCCCATGACCCTCTAAGG  596

seq1  GTCTCCCTCTCCGTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTCTCCGTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGTCT  646

seq1  CTGCCTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGTCTCTGCCTCT  696

seq1  CCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGCCTCTGCCTCTCTCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTCTGCCTCTCCGTCTCTGCCTCTCCGCCTCTGCCTCTCTCTCTGC  746

seq1  CTCTCTCTGCCTCATTGCTGGCAATGTCTCAACATGTACACTCTCGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCCTCATTGCTGGCAATGTCTCAACATGTACACTCTCGACTA  796

seq1  CTGTTCCAGAACCATGCCTACCTGCCCACTGCTATATTCTGCACCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAGAACCATGCCTACCTGCCCACTGCTATATTCTGCACCATGAT  846

seq1  GATCATGAACTTTACTCCCCTCTGGAAGTGAGCCCTAGCTAAATGGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGAACTTTACTCCCCTCTGGAAGTGAGCCCTAGCTAAATGGTTTC  896

seq1  TTCCATAAGTTGTCTTGGTCAGGGTGTCTCTTCAAAGGAAAAGAAAAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGTTGTCTTGGTCAGGGTGTCTCTTCAAAGGAAAAGAAAAGTC  946

seq1  ACTAACACAAGTAGAAAGGTTGATCTACCCTGAACTGATTTGGGGTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACAAGTAGAAAGGTTGATCTACCCTGAACTGATTTGGGGTCCAT  996

seq1  GCATGATAAAACAAACTGTGTCCCTCAAAGGGGACTTCTAAGAAGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATAAAACAAACTGTGTCCCTCAAAGGGGACTTCTAAGAAGAATTC  1046