BAC Information

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BAC

Clone NameB6Ng01-024N01
Chromosome5 (Build37)5 (Build37)
Map Location 110,480,419 - 110,480,691110,260,415 - 110,261,601
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik
Downstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024N01.bB6Ng01-024N01.g
ACCDH856337DH856338
length1,0221,180
definitionDH856337|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N01, 5' end.DH856338|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,480,419 - 110,480,691)(110,260,415 - 110,261,601)
sequence
gaattctgcagaataaaacacttttgcatactatttgagttggggtcttc
cttcagtgattcttggaccctaacattgtaagctctcccaaataaagaca
caaaagataaacaagtgttcaaagacatcaccctatctgggagctttttg
actcaatcaactacattttggtcattgtcatccatgctgaaaatgcactg
agtttaacttcgatgaccctaatagtctgcagcagcccatacatttttca
aatgtccaaagtctgtttgactctcttttttaaaatcaagatttatttat
ttcatttatatgagtacaatttagctatcttcagacacaccagaagaggg
cattggaccaattacagatgattgtgagtcaccattgtacttggtgagaa
ttgaactcaggatctctgaaagagcaagcagacagtgctctaaaccgctg
aggaatctctccatcccctcttctggcactcttgactgctacatcttgta
aaataaaaaagcaagttatatttttctaacatacaaaggcacagaatgcc
ctttcccatcccaatagagaggaatgtgtacataatgtgggatgactgga
ccaaggcaggaaacccagcaggacaaacactacatcctgtagctctgtct
cagacacaacctagaggcacctcaactgaagaatggataaacaaaaaatg
tggtatatttatacaatggggtatcactaagctgtttttaaaaaatgaca
tcgtgaatttacatccaagtgaatgcaactaaaacaaaacaaaacaaaac
aaacaaacaaacaaaaaaaaaccatcttgagggaagtaacccacacccag
aatgaaaaacatggcatgcatttacttataagtagatattatctattagg
taaatataatcaagctgtactccataaacccagagaggctaagcaaagag
gagagctatatgggggaagcacagatctccatctaaaggggaaatagcat
agtttctgtgagcagactgggg
gaattctggtctttactgtgcatgcagagatcatgatttcctaacaattc
agtgtgttttcttagagtcaacattgtattgaatatgtaaaacatctaaa
ctgatttactgtgtaaggaggatgtttctgggttctgtgctgttactaca
caattctacatgcttgagggtagtttaacttcactacattgttttggctg
ctcagtattatttattgaccatataactaccagaaagcacattatacact
gaaattaacttttctttttttttcttgttttttattattttctttattta
catttcaaatgcttgtatctttggtattctgtttctgggctaatatctac
ttatcagtgagtgcctatcaagtgagttcttttgtgattggcttgaaact
aacttttcaatgtgttatttcctgaaatttgccctagcaaaccttaaact
aaaaagtgttatttcggggtttgggattttgctcagtggtagagcgcttg
cctagcaagcactaggccctgggttcggtcctcagttcttgaaaaacata
aaagacaaaataaaagtgttatttctctagagtgtgctcaacaattaatt
ttgtatcagcaaattaagagagcagctttcatatgcacacattcatagtt
aacagagtatgctattgaaacctgttgttaagggcaatgcgtatttcctc
ggtctagtcattttgatctactacaaatttgttcattattagaaatttta
atttaagtaattagctaaattatggatacagtgatactgtgaaattatgt
gaagaagaaaactgcactggagaaatggctcagaggttgaatgcactgac
tgcacttccagaggtcctgagttcattcccagcaagcacacggtggctca
caagtatttgtaatgtgatcttagtgccctcttctggcattgcaggcaga
acactctacagaatacatgaatagatctttatattaataaaaaagaatca
aatgcaaaacctttgccccccagaaaggagaatgctttgtcttcctcttc
ttagaaggaaggtgaattttatttgggaaggcaaaggcctctatggggat
tgtgaaaaatggcatgttacctggatgtctttatatgcactctagaccag
atcatattttactttttgtgtggagggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110480419_110480691
seq2: B6Ng01-024N01.b_52_338

seq1  AATAAAACAC-TTTGCATACTATTTGGGTTGGGGGCTTCCTTCAGTGATT  49
      |||||||||| ||||||||||||||| ||||||| |||||||||||||||
seq2  AATAAAACACTTTTGCATACTATTTGAGTTGGGGTCTTCCTTCAGTGATT  50

seq1  CTTGGACCCTAACATTATAAGCTCTCCCAAAGAAAGCTACAAAGGAAAAA  99
      |||||||||||||||| |||||||||||||| ||||  ||||| || |||
seq2  CTTGGACCCTAACATTGTAAGCTCTCCCAAATAAAGACACAAAAGATAAA  100

seq1  CAAGTGTTCAAAGACATCACCCTATCTGGGAGCTTTTTTACTCAATAAAC  149
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CAAGTGTTCAAAGACATCACCCTATCTGGGAGCTTTTTGACTCAATCAAC  150

seq1  TACATTCTGGTCACGGTCATCCATGATGAAAATGCACTGA-TTTAACTTC  198
      |||||| ||||||  |||||||||| |||||||||||||| |||||||||
seq2  TACATTTTGGTCATTGTCATCCATGCTGAAAATGCACTGAGTTTAACTTC  200

seq1  AATGACCCTAATAGTCTGCAGCAGCCCATACACTGTTCAAATGT------  242
       ||||||||||||||||||||||||||||||| | |||||||||      
seq2  GATGACCCTAATAGTCTGCAGCAGCCCATACATTTTTCAAATGTCCAAAG  250

seq1  TCT------TTCTTTTTTAAAAAAAAAAAATTTATTT  273
      |||       ||| ||||  ||||  || ||||||||
seq2  TCTGTTTGACTCTCTTTTTTAAAATCAAGATTTATTT  287

seq1: chr5_110260415_110261601
seq2: B6Ng01-024N01.g_67_1246 (reverse)

seq1  CTGCCCTCCCACACAAAAGTGAATATTATGATCTGTACTTTGGATGCTAA  50
      ||||||| ||||||||||  | | | |||||||||  | | |  |||  |
seq2  CTGCCCT-CCACACAAAA-AGTAAAATATGATCTGGTC-TAGAGTGCATA  47

seq1  TTAAAGCATCAGGGTAACATGCCATCTTCTTCA-AATACCCATAGAGCCT  99
      | ||  ||||  ||||||||||||  || |||| ||| ||||||||| | 
seq2  TAAAGACATCCAGGTAACATGCCA--TTTTTCACAATCCCCATAGAGGCC  95

seq1  TTTGCCCTCCCAAATAAATTTCACCTTCCTTCTTAGGAAGAGG-AGAC-A  147
      |||||| ||||||||||| ||||||||||||| || ||||||| |||| |
seq2  TTTGCCTTCCCAAATAAAATTCACCTTCCTTC-TAAGAAGAGGAAGACAA  144

seq1  AGCATTCTCCCTTTCTGGGGGGGCAAGGGTTTTGCATTTTGATTCTTTTT  197
      |||||||| ||||||| ||||||||| ||||||||| |||||||||||||
seq2  AGCATTCT-CCTTTCT-GGGGGGCAAAGGTTTTGCA-TTTGATTCTTTTT  191

seq1  TATTATTATTAAAGATCTATTCATGTATTCTGTAGAGTGTTCTGCCTGC-  246
      ||||| || |||||||||||||||||||||||||||||||||||||||| 
seq2  TATTAATA-TAAAGATCTATTCATGTATTCTGTAGAGTGTTCTGCCTGCA  240

seq1  ATGCCAGAAGAGGGCACTAAGATCACATTACAAATACTTGTGAGCCACCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAAGAGGGCACTAAGATCACATTACAAATACTTGTGAGCCACCG  290

seq1  TGTGCTTGCTGGGAATTGAACTCAGGACCTCTGGAAGTGCAGTCAGTGCA  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCTGGGAA-TGAACTCAGGACCTCTGGAAGTGCAGTCAGTGCA  339

seq1  TTCAACCTCTGAGCCATTTCTCCAGTGCAGTTTTCTTCTTCACATAATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCTGAGCCATTTCTCCAGTGCAGTTTTCTTCTTCACATAATTT  389

seq1  CACAGTATCACTGTATCCATAATTTAGCTAATTACTTAAATTAAAATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATCACTGTATCCATAATTTAGCTAATTACTTAAATTAAAATTTC  439

seq1  TAATAATGAACAAATTTGTAGTAGATCAAAATGACTAGACCGAGGAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGAACAAATTTGTAGTAGATCAAAATGACTAGACCGAGGAAATA  489

seq1  CGCATTGCCCTTAACAACAGGTTTCAATAGCATACTCTGTTAACTATGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTGCCCTTAACAACAGGTTTCAATAGCATACTCTGTTAACTATGAA  539

seq1  TGTGTGCATATGAAAGCTGCTCTCTTAATTTGCTGATACAAAATTAATTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATATGAAAGCTGCTCTCTTAATTTGCTGATACAAAATTAATTG  589

seq1  TTGAGCACACTCTAGAGAAATAACACTTTTATTTTGTCTTTTATGTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACACTCTAGAGAAATAACACTTTTATTTTGTCTTTTATGTTTTT  639

seq1  CAAGAACTGAGGACCGAACCCAGGGCCTAGTGCTTGCTAGGCAAGCGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTGAGGACCGAACCCAGGGCCTAGTGCTTGCTAGGCAAGCGCTC  689

seq1  TACCACTGAGCAAAATCCCAAACCCCGAAATAACACTTTTTAGTTTAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGAGCAAAATCCCAAACCCCGAAATAACACTTTTTAGTTTAAGG  739

seq1  TTTGCTAGGGCAAATTTCAGGAAATAACACATTGAAAAGTTAGTTTCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGGCAAATTTCAGGAAATAACACATTGAAAAGTTAGTTTCAAG  789

seq1  CCAATCACAAAAGAACTCACTTGATAGGCACTCACTGATAAGTAGATATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACAAAAGAACTCACTTGATAGGCACTCACTGATAAGTAGATATT  839

seq1  AGCCCAGAAACAGAATACCAAAGATACAAGCATTTGAAATGTAAATAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAAACAGAATACCAAAGATACAAGCATTTGAAATGTAAATAAAG  889

seq1  AAAATAATAAAAAACAAGAAAAAAAAAGAAAAGTTAATTTCAGTGTATAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAAAACAAGAAAAAAAAAGAAAAGTTAATTTCAGTGTATAA  939

seq1  TGTGCTTTCTGGTAGTTATATGGTCAATAAATAATACTGAGCAGCCAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCTGGTAGTTATATGGTCAATAAATAATACTGAGCAGCCAAAA  989

seq1  CAATGTAGTGAAGTTAAACTACCCTCAAGCATGTAGAATTGTGTAGTAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGTGAAGTTAAACTACCCTCAAGCATGTAGAATTGTGTAGTAAC  1039

seq1  AGCACAGAACCCAGAAACATCCTCCTTACACAGTAAATCAGTTTAGATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAACCCAGAAACATCCTCCTTACACAGTAAATCAGTTTAGATGT  1089

seq1  TTTACATATTCAATACAATGTTGACTCTAAGAAAACACACTGAATTGTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATTCAATACAATGTTGACTCTAAGAAAACACACTGAATTGTTA  1139

seq1  GGAAATCATGATCTCTGCATGCACAGTAAAGACCAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCATGATCTCTGCATGCACAGTAAAGACCAGAATTC  1180