BAC Information

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BAC

Clone NameB6Ng01-025C13
Chromosome5 (Build37)
Map Location 75,807,601 - 75,929,603
singlet/doubletdoublet
Overlap geneLOC100039158, LOC100039169
Upstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143
Downstream geneKit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C13.bB6Ng01-025C13.g
ACCDH856589DH856590
length9651,088
definitionDH856589|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C13, 5' end.DH856590|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,807,601 - 75,808,567)(75,928,507 - 75,929,603)
sequence
gaattctatgtcacctctactatttttttcctccacatgttcatggatta
gatgagtgactttgcactggttgcattctctgaaatgttcattttctatg
ggtctctgttcaaaagctctcatgaatggcagcttctctgatgatgcccc
tgggatactaagccacttcttccgtctttttattttgccccgcccctgtg
ggaacttattactattagttataccatctcttagaaggaagcatcacaga
ggtagagattttgccagtgtgagacttgtgggatgagtcacctaggaatg
acagtccatcttgcataggaacgtccgtcacccagcaactaccacctatg
gagcaaaatgggattgttatcccagaaaaagtgagggtggtaggagaaaa
tgccaagcccccactggccagtaagtgactaatgtgctgtggacccctaa
ggcgaggatgtcccctcagggaaaacagtttgtaagatgttgagcggctg
ccatattggaaaccttggagaaaccatgggatcattttcctgtcctgcag
tctaacttaagacagcttctaataattttttctcttgttagaatgcatgc
agatagggttgcagaatattcagcagggaagtgtttcttggatttcagag
agcaaggccaatgaggagtatgtgagaatccccaggaggccggtcacgac
ttcagagtcacaggaatataaaagttgcatgcccaaaaggcttgatatat
ccatataaaggaggggacatttgccttcgtcaaattgcatccttaagttg
gtcacatctgcacctgggaagctgctgccatgtttcactgacctttcaga
cccaatgaaagcctaataggatgtctctaatgaaaacagcccgtagaaaa
atgatctctgaagtgcaaaaacagttttgttttttaatgaatgaataact
ttcgaaactttggaa
gaattcagtagagaccaagttaacagcttcaactaaggaattatgggcat
gcgattcaagataaagtgtgggtaccaatgttgaaccgaagtggctggag
atgggtttgatggtcttctagcacgtcagcatcaggaagagattctgcca
ggccctccaaagcaaaagcacagtaagattcctggctcagaagtgagcac
tgcttacatggtcaatggaatctagcaggtaatgagtatctgaaccaaaa
aactgtccgtgttattatgttagaacagagaaagggagaaggaataggta
cacaacactgatggaacggacacaagaacatctgtgcaggacagcccaag
taagggatgtagtagacactatgtaaaaatgatgaatagattagtcatat
aaaacacagagggaggagccagggagatggctcagcggataaaggtgtta
gaagatgttagctgccaagactgttgatctgagcttggtgtcctgaaccc
ccatgacaggaagagagaaaagagttgccctttgacctccacaccttcac
agaagtgctggggcacatggttacatgcacaagtgaacacatgcagaaat
aagtaagtaaataaataaatgtaaaattaaaattagaatcaaaacaaata
agaaacggagaagcagataccaggatgaagcactaagagttgaaagtggc
ttctttggggggaagtcagagtgaagagtagaaaggagtgctgcttttat
tgtcattattgtcatcatcatggtcatcaccatcatcatcaccaccacca
tcctcatcatcaccaccaccatcaccattattattggaggcagtgtctca
gtatgtagaccaggctggccttgaactcataaagatgtgcttgccggagt
gtgtcaccacatccaggccaataagctatttttaaatgatgtatcagggc
tggagagatgcttagcagttaagaacacgttctgctctgactcagtttct
gcatcatctcagtggctcccaactgcctatagtccagctctgactcagtg
cctcctcttgcctcctgaaggcatctgtactcatctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75807601_75808567
seq2: B6Ng01-025C13.b_41_1005

seq1  GAATTCTATGTCACCTCTACTATTTTTTTCCTCCACATGTTCATGGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCACCTCTACTATTTTTTTCCTCCACATGTTCATGGATTA  50

seq1  GATGAGTGACTTTGCACTGGTTGCATTCTCTGAAATGTTCATTTTCTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGACTTTGCACTGGTTGCATTCTCTGAAATGTTCATTTTCTATG  100

seq1  GGTCTCTGTTCAAAAGCTCTCATGAATGGCAGCTTCTCTGATGATGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTTCAAAAGCTCTCATGAATGGCAGCTTCTCTGATGATGCCCC  150

seq1  TGGGATACTAAGCCACTTCTTCCGTCTTTTTATTTTGCCCCGCCCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATACTAAGCCACTTCTTCCGTCTTTTTATTTTGCCCCGCCCCTGTG  200

seq1  GGAACTTATTACTATTAGTTATACCATCTCTTAGAAGGAAGCATCACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTATTACTATTAGTTATACCATCTCTTAGAAGGAAGCATCACAGA  250

seq1  GGTAGAGATTTTGCCAGTGTGAGACTTGTGGGATGAGTCACCTAGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGATTTTGCCAGTGTGAGACTTGTGGGATGAGTCACCTAGGAATG  300

seq1  ACAGTCCATCTTGCATAGGAACGTCCGTCACCCAGCAACTACCACCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCATCTTGCATAGGAACGTCCGTCACCCAGCAACTACCACCTATG  350

seq1  GAGCAAAATGGGATTGTTATCCCAGAAAAAGTGAGGGTGGTAGGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATGGGATTGTTATCCCAGAAAAAGTGAGGGTGGTAGGAGAAAA  400

seq1  TGCCAAGCCCCCACTGGCCAGTAAGTGACTAATGTGCTGTGGACCCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCCCCCACTGGCCAGTAAGTGACTAATGTGCTGTGGACCCCTAA  450

seq1  GGCGAGGATGTCCCCTCAGGGAAAACAGTTTGTAAGATGTTGAGCGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGATGTCCCCTCAGGGAAAACAGTTTGTAAGATGTTGAGCGGCTG  500

seq1  CCATATTGGAAACCTTGGAGAAACCATGGGATCATTTTCCTGTCCTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGGAAACCTTGGAGAAACCATGGGATCATTTTCCTGTCCTGCAG  550

seq1  TCTAACTTAAGACAGCTTCTAATAATTTTTTCTCTTGTTAGAATGCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTAAGACAGCTTCTAATAATTTTTTCTCTTGTTAGAATGCATGC  600

seq1  AGATAGGGTTGCAGAATATTCAGCAGGGAAGTGTTTCTTGGATTTCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGTTGCAGAATATTCAGCAGGGAAGTGTTTCTTGGATTTCAGAG  650

seq1  AGCAAGGCCAATGAGGAGTATGTGAGAATCCCCAGGAGGCCGGTCACGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCAATGAGGAGTATGTGAGAATCCCCAGGAGGCCGGTCACGAC  700

seq1  TTCAGAGTCACAGGAATATAAAAGTTGCATGCCCAAAAGGCTTGATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCACAGGAATATAAAAGTTGCATGCCCAAAAGGCTTGATATAT  750

seq1  CCATAT-AAGGAGGGGACATTTGCCTTCGTCAAATTGCAGCCTTAAGTTT  799
      |||||| |||||||||||||||||||||||||||||||| ||||||||| 
seq2  CCATATAAAGGAGGGGACATTTGCCTTCGTCAAATTGCATCCTTAAGTTG  800

seq1  GTACACATCTGCACCTGGGAAGCTGCTGCCATGTTTCACTGACCTTTCAG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-CACATCTGCACCTGGGAAGCTGCTGCCATGTTTCACTGACCTTTCAG  849

seq1  ACCCAATGAAAGCCTAAAAGGATGTCAGCGAATGAGAACAGCCCGTAGAA  899
      ||||||||||||||||| ||||||||  | ||||| ||||||||||||||
seq2  ACCCAATGAAAGCCTAATAGGATGTC-TCTAATGAAAACAGCCCGTAGAA  898

seq1  AAATGATCTCTGAAGTTGCAAAAACAGTTTTTGTTTTTAAATGGATGAAT  949
      ||||||||||||||| ||||||||||| |||||||||| |||| ||||||
seq2  AAATGATCTCTGAAG-TGCAAAAACAG-TTTTGTTTTTTAATGAATGAAT  946

seq1  AAC-TTCGAAACTCTGGAA  967
      ||| ||||||||| |||||
seq2  AACTTTCGAAACTTTGGAA  965

seq1: chr5_75928507_75929603
seq2: B6Ng01-025C13.g_68_1155 (reverse)

seq1  GGAGATGAGTACAGATGCCCTCAGGAGGCCAGA-GAGGCACTGAGTCCAA  49
      ||||||||||||||||||| ||||||||| ||| |||||||||||||  |
seq2  GGAGATGAGTACAGATGCCTTCAGGAGGCAAGAGGAGGCACTGAGTC--A  48

seq1  GAGCTGGACTTATAGGCAGTTGTGAGCCACCTGAGATGAATGCCAGAAAC  99
      ||||||||| |||||||||||| |||||| |||||||| ||| |||||||
seq2  GAGCTGGAC-TATAGGCAGTTGGGAGCCA-CTGAGATG-ATG-CAGAAAC  94

seq1  TGAAGTCAGAGCAGAACGTGTTCTTAACTGCTAAGCCATCTCTCCAGCCC  149
      || |||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TG-AGTCAGAGCAGAACGTGTTCTTAACTGCTAAG-CATCTCTCCAG-CC  141

seq1  CTGATAACATCATTTAAAAATAGCTTATTGGCCTGGATGTGGTGACACAC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAT-ACATCATTTAAAAATAGCTTATTGGCCTGGATGTGGTGACACAC  190

seq1  TCCGGCAAGCACATCTTTATGAGTTCAAGGCCAGCCTGGTCTACATACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCAAGCACATCTTTATGAGTTCAAGGCCAGCCTGGTCTACATACTG  240

seq1  AGACACTGCCTCCAATAATAATGGTGATGGTGGTGGTGATGATGAGGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGCCTCCAATAATAATGGTGATGGTGGTGGTGATGATGAGGATG  290

seq1  GTGGTGGTGATGATGATGGTGATGACCATGATGATGACAATAATGACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGATGATGATGGTGATGACCATGATGATGACAATAATGACAAT  340

seq1  AAAAGCAGCACTCCTTTCTACTCTTCACTCTGACTTCCCCCCAAAGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGCACTCCTTTCTACTCTTCACTCTGACTTCCCCCCAAAGAAGC  390

seq1  CACTTTCAACTCTTAGTGCTTCATCCTGGTATCTGCTTCTCCGTTTCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAACTCTTAGTGCTTCATCCTGGTATCTGCTTCTCCGTTTCTTA  440

seq1  TTTGTTTTGATTCTAATTTTAATTTTACATTTATTTATTTACTTACTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGATTCTAATTTTAATTTTACATTTATTTATTTACTTACTTAT  490

seq1  TTCTGCATGTGTTCACTTGTGCATGTAACCATGTGCCCCAGCACTTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGTGTTCACTTGTGCATGTAACCATGTGCCCCAGCACTTCTGT  540

seq1  GAAGGTGTGGAGGTCAAAGGGCAACTCTTTTCTCTCTTCCTGTCATGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGGAGGTCAAAGGGCAACTCTTTTCTCTCTTCCTGTCATGGGG  590

seq1  GTTCAGGACACCAAGCTCAGATCAACAGTCTTGGCAGCTAACATCTTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGACACCAAGCTCAGATCAACAGTCTTGGCAGCTAACATCTTCTA  640

seq1  ACACCTTTATCCGCTGAGCCATCTCCCTGGCTCCTCCCTCTGTGTTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTATCCGCTGAGCCATCTCCCTGGCTCCTCCCTCTGTGTTTTAT  690

seq1  ATGACTAATCTATTCATCATTTTTACATAGTGTCTACTACATCCCTTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAATCTATTCATCATTTTTACATAGTGTCTACTACATCCCTTACT  740

seq1  TGGGCTGTCCTGCACAGATGTTCTTGTGTCCGTTCCATCAGTGTTGTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTCCTGCACAGATGTTCTTGTGTCCGTTCCATCAGTGTTGTGTA  790

seq1  CCTATTCCTTCTCCCTTTCTCTGTTCTAACATAATAACACGGACAGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCTTCTCCCTTTCTCTGTTCTAACATAATAACACGGACAGTTTT  840

seq1  TTGGTTCAGATACTCATTACCTGCTAGATTCCATTGACCATGTAAGCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGATACTCATTACCTGCTAGATTCCATTGACCATGTAAGCAGT  890

seq1  GCTCACTTCTGAGCCAGGAATCTTACTGTGCTTTTGCTTTGGAGGGCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTCTGAGCCAGGAATCTTACTGTGCTTTTGCTTTGGAGGGCCTG  940

seq1  GCAGAATCTCTTCCTGATGCTGACGTGCTAGAAGACCATCAAACCCATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTCTTCCTGATGCTGACGTGCTAGAAGACCATCAAACCCATCT  990

seq1  CCAGCCACTTCGGTTCAACATTGGTACCCACACTTTATCTTGAATCGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACTTCGGTTCAACATTGGTACCCACACTTTATCTTGAATCGCAT  1040

seq1  GCCCATAATTCCTTAGTTGAAGCTGTTAACTTGGTCTCTACTGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAATTCCTTAGTTGAAGCTGTTAACTTGGTCTCTACTGAATTC  1088