BAC Information

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BAC

Clone NameB6Ng01-025P02
Chromosome5 (Build37)
Map Location 87,684,121 - 87,828,882
singlet/doubletdoublet
Overlap geneLOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
Upstream geneTmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025P02.bB6Ng01-025P02.g
ACCDH857132DH857133
length1,109414
definitionDH857132|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P02, 5' end.DH857133|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,827,746 - 87,828,882)(87,684,121 - 87,684,540)
sequence
gaattcctgaagctttgtggaccaccagtgagaaaaaaaaatacagagaa
caagaaattctgtctctatcaggaaatacatttcaattaaacatctgaga
tagtcttctcaatgtcaccaactcactttggtacacataaacatacattt
gcacacatcaaatgtctcatctatgcttcaacagaacacagagggagtga
ggcagacaaaaagttaagaaatggaggaagtaacaaatctcagtgataat
tacaaaaacgagaatgctcaattaaattttatgtgcaaattttcctgccc
ttactgagtagaaatacacagatcagtattactattcttagaatcccaaa
gcaaaattgatttttcatgaagagttaataattatagagttttgaattca
tgtaaatgaaaagcaacatgtacaaaatctgtgcaacatggaaacaaacc
aaatctgagcatggagagaggagaggggcacttggtccacaccacacaga
gccttggactcttgacatctgttcacttataggaggagaagggtgcagct
cctgcgaagtcaactactatctactgaaggaccgcatacacaagaatatt
tggaatgtgcaaatcagtcttgaagttgttgggtttctttctcttttttt
gaagggtacttagttgggttggtaaggaagatgatgatttacagattatg
gtaagaaggaatgaattttaagaagcacgttatatgaaattctaaagaga
aatgcaaaaacaaagagaaatatcagtttctcttggtgtgatcacagtca
tcattggaacagcaagttgaatcccagggtaggggtgatgcctgcatgtt
ctgaaccattagtccacaacaatagctctacaaagggtgtgtgtccatta
agggaagttggcatagcaggtttatatttgcatttaaatcctaccctgcc
accactccagaggagtggaagatgaacgcaagcatacccactttattcag
ataatcaataagtatactctgaggtaacaagatttttttttgaaggagct
tttttcattttattagatatttcttcattacatttcaatgctatctgaag
ttctatata
tcctctatatggccttgaaagcttattaatttacatagttgaatgtcatg
atgactcttccctttcctttaatgtgaccaattattctgactaaatcatg
gactgttctaataatcaatccaatattagaaataacagacttcatttaaa
aggctggttctagacagttttagagacatatttgaaagttagctacagtt
ttctatgatgatatgttaacaatagatggggacaggttatagcaaatatt
aaggttaggttagctactaaaggtcgtgcttcatttcaatatatatgtgt
catgccattaacttataatgcaaccattaattggggaaagactaaggctc
atttgcagggagtgtggaaaaatacagatatttcacatattatacagcaa
ttaaagatagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87827746_87828882
seq2: B6Ng01-025P02.b_46_1154 (reverse)

seq1  TATATGGAACTTTCAGGATAGCATTTGAAATGTAAATGAAGAAAATATCT  50
      ||||| |||| |||| ||||||| ||||||||| ||||||| ||||||||
seq2  TATATAGAAC-TTCA-GATAGCA-TTGAAATGT-AATGAAG-AAATATCT  45

seq1  AATTAAAAAATTGAAAAAAAAAGCTCATCTCAAAAAAAAAATCTTTGTTT  100
      |||   |||||     ||||||||||  ||  ||||||||||| ||||| 
seq2  AAT---AAAAT----GAAAAAAGCTC--CTTCAAAAAAAAATC-TTGTT-  84

seq1  AACCCTCAGAGTATACTTTATTTGATTATCTGAATAAAGTTGGGTATTGC  150
         |||||||||||||||   |||||||||||||||||| |||||| |||
seq2  --ACCTCAGAGTATACTT--ATTGATTATCTGAATAAAG-TGGGTA-TGC  128

seq1  TTTTGGCGTTCATCTTCCACTTCCTCTGGAGTGGTGGCAGGGTAGGATTT  200
      ||   ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TT---GCGTTCATCTTCCAC-TCCTCTGGAGTGGTGGCAGGGTAGGATTT  174

seq1  AAATGCAAATATTAAACCTGCTATGCCAACTTCACCTTAATGGACACACA  250
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  AAATGCAAATA-TAAACCTGCTATGCCAACTTC-CCTTAATGGACACACA  222

seq1  CCCTTTGTAGAGCTATTGTTGTGGACTAATGGTTCAGAACATGCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTAGAGCTATTGTTGTGGACTAATGGTTCAGAACATGCAGGCAT  272

seq1  CACCCCTACCCTGGGATTCAACTTGCTGTTCCAATGATGACTGTGATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTACCCTGGGATTCAACTTGCTGTTCCAATGATGACTGTGATCAC  322

seq1  ACCAAGAGAAACTGATATTTCTCTTTGTTTTTGCATTTCTCTTTAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGAAACTGATATTTCTCTTTGTTTTTGCATTTCTCTTTAGAATT  372

seq1  TCATATAACGTGCTTCTTAAAATTCATTCCTTCTTACCATAATCTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAACGTGCTTCTTAAAATTCATTCCTTCTTACCATAATCTGTAAA  422

seq1  TCATCATCTTCCTTACCAACCCAACTAAGTACCCTTCAAAAAAAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCTTCCTTACCAACCCAACTAAGTACCCTTCAAAAAAAGAGAAA  472

seq1  GAAACCCAACAACTTCAAGACTGATTTGCACATTCCAAATATTCTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAACAACTTCAAGACTGATTTGCACATTCCAAATATTCTTGTGT  522

seq1  ATGCGGTCCTTCAGTAGATAGTAGTTGACTTCGCAGGAGCTGCACCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGTCCTTCAGTAGATAGTAGTTGACTTCGCAGGAGCTGCACCCTTC  572

seq1  TCCTCCTATAAGTGAACAGATGTCAAGAGTCCAAGGCTCTGTGTGGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTATAAGTGAACAGATGTCAAGAGTCCAAGGCTCTGTGTGGTGTG  622

seq1  GACCAAGTGCCCCTCTCCTCTCTCCATGCTCAGATTTGGTTTGTTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTGCCCCTCTCCTCTCTCCATGCTCAGATTTGGTTTGTTTCCAT  672

seq1  GTTGCACAGATTTTGTACATGTTGCTTTTCATTTACATGAATTCAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAGATTTTGTACATGTTGCTTTTCATTTACATGAATTCAAAACT  722

seq1  CTATAATTATTAACTCTTCATGAAAAATCAATTTTGCTTTGGGATTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTATTAACTCTTCATGAAAAATCAATTTTGCTTTGGGATTCTAA  772

seq1  GAATAGTAATACTGATCTGTGTATTTCTACTCAGTAAGGGCAGGAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAATACTGATCTGTGTATTTCTACTCAGTAAGGGCAGGAAAATT  822

seq1  TGCACATAAAATTTAATTGAGCATTCTCGTTTTTGTAATTATCACTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAAAATTTAATTGAGCATTCTCGTTTTTGTAATTATCACTGAGA  872

seq1  TTTGTTACTTCCTCCATTTCTTAACTTTTTGTCTGCCTCACTCCCTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACTTCCTCCATTTCTTAACTTTTTGTCTGCCTCACTCCCTCTGT  922

seq1  GTTCTGTTGAAGCATAGATGAGACATTTGATGTGTGCAAATGTATGTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTGAAGCATAGATGAGACATTTGATGTGTGCAAATGTATGTTTA  972

seq1  TGTGTACCAAAGTGAGTTGGTGACATTGAGAAGACTATCTCAGATGTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCAAAGTGAGTTGGTGACATTGAGAAGACTATCTCAGATGTTTA  1022

seq1  ATTGAAATGTATTTCCTGATAGAGACAGAATTTCTTGTTCTCTGTATTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGTATTTCCTGATAGAGACAGAATTTCTTGTTCTCTGTATTTT  1072

seq1  TTTTTCTCACTGGTGGTCCACAAAGCTTCAGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCACTGGTGGTCCACAAAGCTTCAGGAATTC  1109

seq1: chr5_87684121_87684540
seq2: B6Ng01-025P02.g_66_485

seq1  GAATTCTCCTCTATATGGCCTTGAAAGCTTATTAATTTACATAGTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTATATGGCCTTGAAAGCTTATTAATTTACATAGTTGAAT  50

seq1  GTCATGATGACTCTTCCCTTTCCTTTAATGTGACCAATTATTCTGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATGACTCTTCCCTTTCCTTTAATGTGACCAATTATTCTGACTAA  100

seq1  ATCATGGACTGTTCTAATAATCAATCCAATATTAGAAATAACAGACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACTGTTCTAATAATCAATCCAATATTAGAAATAACAGACTTCA  150

seq1  TTTAAAAGGCTGGTTCTAGACAGTTTTAGAGACATATTTGAAAGTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCTGGTTCTAGACAGTTTTAGAGACATATTTGAAAGTTAGCT  200

seq1  ACAGTTTTCTATGATGATATGTTAACAATAGATGGGGACAGGTTATAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCTATGATGATATGTTAACAATAGATGGGGACAGGTTATAGCA  250

seq1  AATATTAAGGTTAGGTTAGCTACTAAAGGTCGTGCTTCATTTCAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGGTTAGGTTAGCTACTAAAGGTCGTGCTTCATTTCAATATAT  300

seq1  ATGTGTCATGCCATTAACTTATAATGCAACCATTAATTGGGGAAAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATGCCATTAACTTATAATGCAACCATTAATTGGGGAAAGACTA  350

seq1  AGGCTCATTTGCAGGGAGTGTGGAAAAATACAGATATTTCACATATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATTTGCAGGGAGTGTGGAAAAATACAGATATTTCACATATTATA  400

seq1  CAGCAATTAAAGATAGAAAT  420
      ||||||||||||||||||||
seq2  CAGCAATTAAAGATAGAAAT  420