BAC Information

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BAC

Clone NameB6Ng01-026B05
Chromosome5 (Build37)
Map Location 117,204,599 - 117,205,550
singlet/doubletsinglet
Overlap geneGm1684
Upstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026B05.bB6Ng01-026B05.g
ACCDH857222DH857223
length509949
definitionDH857222|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B05, 5' end.DH857223|Mus musculus domesticus DNA, BAC clone: B6Ng01-026B05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atctttccctgctcccctaaccctggttgatgcaagtgcgaaaagtcctg
cagttaggctgacttagtgtgccaccatgggaagctgtatggggttctta
aaaaaaaagaaaaaaaacactctcaaaacagagcgattgtatgatttcac
cacgtcatacatcactccaggggacatattcaaaaggctctaagtcagct
taccacagacactctgtcagctacctactgcaatactattcacaacagcc
aagatgtggactcagcatcacggtccctcggtagaggacctgataaagga
gatatggtgtatatacatgatggagtattactcagcgacaaagaagagta
aagtcatgtcacttgctggaaaatagatggcactagagattacaatggta
actggaattgagccatagagaaagaacaaactctatctcttctcacctgg
aagctggaaaggagaccgtttgggaagaacaggggttggtgatgaaggga
gtggggagg
gaattccacgctgagatcgaggcagccccgggggttgtttagacaaatac
caggggccagggacttggttctctacaaggaggagagctgcatacaaagt
cttacacaaagcagggtttccaaagagaaatggatttttttttctcagca
gcccaaatgagctctcaacaaatgtaccatctgcttggattccatgcagg
ctctcccagaacagaccattagctctagtgaaaaagcaagctcctgtggt
gtagttaggaagagactcccagaagcctggtgagagtgtaggccccataa
gaaagggagatggagaaagtcagagaaagggaccccatgagtcagttgct
gctgtgcacagatacacaaaatcctactgagaaccagtggagatgagacg
gaacatctcagaatcgtcaggcctaggagggtgtcttctgctgtttcagt
agctttagacttccagccctgaggcccttggaagcctctgccatgtgtgg
aacaccactgggatgtcctagtcccaactggatctcaccccacatgatgg
ctagttttaattgctaaattgttacatctagggattccctatgaaaagaa
cctggatgagggaattgaccagatcaggcttgcccatgagtatgtctgtg
ggagactgtcttgactgttgatggatgtaggaagactaattgtaggcagt
accattgcctaggtatgaagtcctgaacagtacagaacaagagaaagtta
gctgagagtaaataggcaagatggatatatttgtttctccctgctcttga
ctgccaatgtcatggaaacgcttgggttcctgccctggatgtcctctcaa
ttatgaactgttacctgcaagtacaatctggaataaatgccttttctctc
tatgtttgctttgatcatcaggcagagacaggaaatggaatatctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117204599_117205550
seq2: B6Ng01-026B05.g_68_1016

seq1  GAATTCCA-GCTGAGATCGAGGCAGCCCCGGGGGTTGTTTAGACAAATAC  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGCTGAGATCGAGGCAGCCCCGGGGGTTGTTTAGACAAATAC  50

seq1  CAGGGGCCAGGGACTTGGTTCTCTACAAGGAGGAGAGCTGCATACAAAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCAGGGACTTGGTTCTCTACAAGGAGGAGAGCTGCATACAAAGT  100

seq1  CTTACACAAAGCAGGGTTTCCAAAGAGAAATGGATTTTTTTTTCTCAGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAAAGCAGGGTTTCCAAAGAGAAATGGATTTTTTTTTCTCAGCA  150

seq1  GCCCAAATGAGCTCTCAACAAATGTACCATCTGCTTGGATTCCATGCAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATGAGCTCTCAACAAATGTACCATCTGCTTGGATTCCATGCAGG  200

seq1  CTCTCCCAGAACAGACCATTAGCTCTAGTGAAAAAGCAAGCTCCTGTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGAACAGACCATTAGCTCTAGTGAAAAAGCAAGCTCCTGTGGT  250

seq1  GTAGTTAGGAAGAGACTCCCAGAAGCCTGGTGAGAGTGTAGGCCCCATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGGAAGAGACTCCCAGAAGCCTGGTGAGAGTGTAGGCCCCATAA  300

seq1  GAAAGGGAGATGGAGAAAGTCAGAGAAAGGGACCCCATGAGTCAGTTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGATGGAGAAAGTCAGAGAAAGGGACCCCATGAGTCAGTTGCT  350

seq1  GCTGTGCACAGATACACAAAATCCTACTGAGAACCAGTGGAGATGAGACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCACAGATACACAAAATCCTACTGAGAACCAGTGGAGATGAGACG  400

seq1  GAACATCTCAGAATCGTCAGGCCTAGGAGGGTGTCTTCTGCTGTTTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTCAGAATCGTCAGGCCTAGGAGGGTGTCTTCTGCTGTTTCAGT  450

seq1  AGCTTTAGACTTCCAGCCCTGAGGCCCTTGGAAGCCTCTGCCATGTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGACTTCCAGCCCTGAGGCCCTTGGAAGCCTCTGCCATGTGTGG  500

seq1  AACACCACTGGGATGTCCTAGTCCCAACTGGATCTCACCCCACATGATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACTGGGATGTCCTAGTCCCAACTGGATCTCACCCCACATGATGG  550

seq1  CTAGTTTTAATTGCTAAATTGTTACATCTAGGGATTCCCTATGAAAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTAATTGCTAAATTGTTACATCTAGGGATTCCCTATGAAAAGAA  600

seq1  CCTGGATGAGGGAATTGACCAGATCAGGCTTGCCCATGAGTATGTCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGAGGGAATTGACCAGATCAGGCTTGCCCATGAGTATGTCTGTG  650

seq1  GGAGACTGTCTTGACTGTTGATGGATGTAGGAAGACTAATTGTAGGCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGTCTTGACTGTTGATGGATGTAGGAAGACTAATTGTAGGCAGT  700

seq1  ACCATTGCCTAGGTATGAAGTCCTGAACAGTACAGAACAAGAGAAAGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCCTAGGTATGAAGTCCTGAACAGTACAGAACAAGAGAAAGTTA  750

seq1  GCTGAGAGTAAATAGGCAAGATGGATATATTTGTTTCTCCCTGCTCTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTAAATAGGCAAGATGGATATATTTGTTTCTCCCTGCTCTTGA  800

seq1  CTGCCAATGTCATGGAAAACGCTTGGGTTCCTG-CCTTGATGTCCTCTCA  848
      ||||||||||||||| ||||||||||||||||| ||| ||||||||||||
seq2  CTGCCAATGTCATGG-AAACGCTTGGGTTCCTGCCCTGGATGTCCTCTCA  849

seq1  ATTATGAACTGTTACCTGCAAGTACAATCTGGAATAAATGCCTTTTCTCC  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTATGAACTGTTACCTGCAAGTACAATCTGGAATAAATGCCTTTTCT-C  898

seq1  TCTATGTTGCTTTTGATCATCAGGGCAGTAGACAGGAAATGGGAATATCT  948
      ||||||||   ||||||||||| ||||| ||||||||||| |||||||||
seq2  TCTATGTTTGCTTTGATCATCA-GGCAG-AGACAGGAAAT-GGAATATCT  945

seq1  CTAC  952
      ||||
seq2  CTAC  949