BAC Information

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BAC

Clone NameB6Ng01-026L08
Chromosome5 (Build37)
Map Location 144,905,436 - 145,049,692
singlet/doubletdoublet
Overlap geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Upstream geneLOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026L08.bB6Ng01-026L08.g
ACCDH857669DH857670
length999616
definitionDH857669|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L08, 5' end.DH857670|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,048,688 - 145,049,692)(144,905,436 - 144,906,051)
sequence
gaattccacagaccgtggtggccaagactaaccaggtcagggttccccat
cctgcctctgtgaatggcccatttcattgatctgtctgaggtggcagaaa
ccgcacaggagtatggacagcgggaacccgtgggaagtgagctgggctgg
caaggccgagtcctgagtagagctgtgctcggctctcagggccgtgctct
gaggtctgcactggagtgaggctgcggaaacccagttcaagaagggtcac
gttaggaagaaacgtggccactgtgcttcccaacagaatcctgatggttt
cagccaaaacagttgtacattttcttttctaagaagatgtgacttgccaa
gaactgagtgcttagttttcaaataattgaagtgtattttgtttttgttt
ttttttttaatctccaacaagggattttttttatggttcaaaatagattt
aaagtaagtctgaatgtttccatatctgaagtgacatagtaatgtagtta
tattcttggccaggctgcagacgtctcttgtgagcgtctagcttgtcttt
ttatattgacttttggaaattttagctggcatcattggggtggggagcta
atgaacctgattggttaaaaaccctgactcctttctgccatagctctcct
ttatccggcacattagcttatgggacagtgtgtgttcttgggatcctggt
ggcctgtgacttctccaggttatgtacaagcagttctctgtgcccatcat
acccagggttacacagcacttgtctatggaggccttccccttatcgatca
caggttgttttatctgggacactggaaagaaaagggaggttgcctgttcc
tttgcttttaaaaagacctctggcaccatgtaagttgacccagaagagaa
ctactccagaggattaagaatgccctggacaggatggagtggaagaaact
cctagaaaaccaccagctgatcttgtgggggccatcttccacttttgtt
gaattcttcgggaggttaagccataacctacacaaaggcagttccattgc
agaatgctaagatgaaagcaggggaattggttggagcttgtgcaagcatc
caagtggccgtgtagggtaactgtgtgctcttaatgcagaagactgctcc
tacttagcacgctgtagctgcccatcattctctgtcgagggttgaagcat
tgcgagctttcctccttttagacagtcttgctatgcatctgacctccctg
tctttctacctcagcttcccaagtaccagcataagaaggggtgaaccccg
acatccagatgtgttctattttgtgggtgcaaagcagcttcagcctgttt
ctttatcagggtgcaggagagaaggaggcagttgtgagagcaaagtcctg
ggcaagcaagaggtcaggggccaatggcacatttgaaaatttggtcttag
atgcagaggcagtgtctttcttgcactggggcagaagcggatggtgtaga
tctgggtgcaggtgcacccatgggtgttacctcagtggagaggccagttc
tctccagagggcaacagtggaaaagatgtgtggaatttgactagaatgcg
tgataaccactgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145048688_145049692
seq2: B6Ng01-026L08.b_42_1040 (reverse)

seq1  AACAAAAGTGGAAGATGGCCCCCACACAGATCCAGCTGGCTAGGTCTCTT  50
      |||||||||||||||||||||||||| |||| |||||||   ||| |  |
seq2  AACAAAAGTGGAAGATGGCCCCCACA-AGAT-CAGCTGG--TGGTTTTCT  46

seq1  AGGAGTCTCCTCCACTCCATCCCTGTCCAGTGCATTCCTCATTCCTCTGG  100
      |||||| || |||||||||| ||||||||| ||||| || | ||||||||
seq2  AGGAGTTTCTTCCACTCCAT-CCTGTCCAGGGCATT-CTTAATCCTCTGG  94

seq1  AGTAGGTTCTCTCTTGGGTCAACTTTACATGGTGCCAGAGGTCTTTCTAA  150
      |||| |||||||  ||||||||| |||||||||||||||||||||| |||
seq2  AGTA-GTTCTCTTCTGGGTCAAC-TTACATGGTGCCAGAGGTCTTTTTAA  142

seq1  AAGCAAA-GAACAGGCAACCTCCCTGTTCTCTCCAGTGTCCCAGATAAAA  199
      ||||||| ||||||||||||||||| |||| |||||||||||||||||||
seq2  AAGCAAAGGAACAGGCAACCTCCCTTTTCTTTCCAGTGTCCCAGATAAAA  192

seq1  CAACCTGTGATCGATAAGGGGAAGGCCTCCATAGACAAGTGCTGTGTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTGATCGATAAGGGGAAGGCCTCCATAGACAAGTGCTGTGTAAC  242

seq1  CCTGGGTATGATGGGCACAGAGAACTGCTTGTACATAACCTGGAGAAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATGATGGGCACAGAGAACTGCTTGTACATAACCTGGAGAAGTC  292

seq1  ACAGGCCACCAGGAT-CCAAGAACACACACTGTCCCATAAGCTAATGTGC  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGGCCACCAGGATCCCAAGAACACACACTGTCCCATAAGCTAATGTGC  342

seq1  CGGATAAAGGAGAGCTATGGCAGAAAGGAGTCAGGGTTTTTAACCAATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAAAGGAGAGCTATGGCAGAAAGGAGTCAGGGTTTTTAACCAATCA  392

seq1  GGTTCATTAGCTCCCCACCCCAATGATGCCAGCTAAAATTTCCAAAAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTAGCTCCCCACCCCAATGATGCCAGCTAAAATTTCCAAAAGTC  442

seq1  AATATAAAAAGACAAGCTAGACGCTCACAAGAGACGTCTGCAGCCTGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAAGACAAGCTAGACGCTCACAAGAGACGTCTGCAGCCTGGCC  492

seq1  AAGAATATAACTACATTACTATGTCACTTCAGATATGGAAACATTCAGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAACTACATTACTATGTCACTTCAGATATGGAAACATTCAGAC  542

seq1  TTACTTTAAATCTATTTTGAACCATAAAAAAAATCCCTTGTTGGAGATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAAATCTATTTTGAACCATAAAAAAAATCCCTTGTTGGAGATTA  592

seq1  AAAAAAAAAACAAAAACAAAATACACTTCAATTATTTGAAAACTAAGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAAACAAAATACACTTCAATTATTTGAAAACTAAGCAC  642

seq1  TCAGTTCTTGGCAAGTCACATCTTCTTAGAAAAGAAAATGTACAACTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTGGCAAGTCACATCTTCTTAGAAAAGAAAATGTACAACTGTT  692

seq1  TTGGCTGAAACCATCAGGATTCTGTTGGGAAGCACAGTGGCCACGTTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAAACCATCAGGATTCTGTTGGGAAGCACAGTGGCCACGTTTCT  742

seq1  TCCTAACGTGACCCTTCTTGAACTGGGTTTCCGCAGCCTCACTCCAGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACGTGACCCTTCTTGAACTGGGTTTCCGCAGCCTCACTCCAGTGC  792

seq1  AGACCTCAGAGCACGGCCCTGAGAGCCGAGCACAGCTCTACTCAGGACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAGAGCACGGCCCTGAGAGCCGAGCACAGCTCTACTCAGGACTC  842

seq1  GGCCTTGCCAGCCCAGCTCACTTCCCACGGGTTCCCGCTGTCCATACTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGCCAGCCCAGCTCACTTCCCACGGGTTCCCGCTGTCCATACTCC  892

seq1  TGTGCGGTTTCTGCCACCTCAGACAGATCAATGAAATGGGCCATTCACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGTTTCTGCCACCTCAGACAGATCAATGAAATGGGCCATTCACAG  942

seq1  AGGCAGGATGGGGAACCCTGACCTGGTTAGTCTTGGCCACCACGGTCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGATGGGGAACCCTGACCTGGTTAGTCTTGGCCACCACGGTCTGT  992

seq1  GGAATTC  1005
      |||||||
seq2  GGAATTC  999

seq1: chr5_144905436_144906051
seq2: B6Ng01-026L08.g_67_682

seq1  GAATTCTTCGGGAGGTTAAGCCATAACCTACACAAAGGCAGTTCCATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGGAGGTTAAGCCATAACCTACACAAAGGCAGTTCCATTGC  50

seq1  AGAATGCTAAGATGAAAGCAGGGGAATTGGTTGGAGCTTGTGCAAGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTAAGATGAAAGCAGGGGAATTGGTTGGAGCTTGTGCAAGCATC  100

seq1  CAAGTGGCCGTGTAGGGTAACTGTGTGCTCTTAATGCAGAAGACTGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCCGTGTAGGGTAACTGTGTGCTCTTAATGCAGAAGACTGCTCC  150

seq1  TACTTAGCACGCTGTAGCTGCCCATCATTCTCTGTCGAGGGTTGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGCACGCTGTAGCTGCCCATCATTCTCTGTCGAGGGTTGAAGCAT  200

seq1  TGCGAGCTTTCCTCCTTTTAGACAGTCTTGCTATGCATCTGACCTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCTTTCCTCCTTTTAGACAGTCTTGCTATGCATCTGACCTCCCTG  250

seq1  TCTTTCTACCTCAGCTTCCCAAGTACCAGCATAAGAAGGGGTGAACCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACCTCAGCTTCCCAAGTACCAGCATAAGAAGGGGTGAACCCCG  300

seq1  ACATCCAGATGTGTTCTATTTTGTGGGTGCAAAGCAGCTTCAGCCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGATGTGTTCTATTTTGTGGGTGCAAAGCAGCTTCAGCCTGTTT  350

seq1  CTTTATCAGGGTGCAGGAGAGAAGGAGGCAGTTGTGAGAGCAAAGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAGGGTGCAGGAGAGAAGGAGGCAGTTGTGAGAGCAAAGTCCTG  400

seq1  GGCAAGCAAGAGGTCAGGGGCCAATGGCACATTTGAAAATTTGGTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAAGAGGTCAGGGGCCAATGGCACATTTGAAAATTTGGTCTTAG  450

seq1  ATGCAGAGGCAGTGTCTTTCTTGCACTGGGGCAGAAGCGGATGGTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGCAGTGTCTTTCTTGCACTGGGGCAGAAGCGGATGGTGTAGA  500

seq1  TCTGGGTGCAGGTGCACCCATGGGTGTTACCTCAGTGGAGAGGCCAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGCAGGTGCACCCATGGGTGTTACCTCAGTGGAGAGGCCAGTTC  550

seq1  TCTCCAGAGGGCAACAGTGG-AAAGATGTGTGGAAGTTTGACTAGAAGGC  599
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  TCTCCAGAGGGCAACAGTGGAAAAGATGTGTGGAA-TTTGACTAGAATGC  599

seq1  GTGAGAACCACTGGGGA  616
      |||| ||||||||||||
seq2  GTGATAACCACTGGGGA  616