BAC Information

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BAC

Clone NameB6Ng01-027B05
Chromosome5 (Build37)
Map Location 115,831,420 - 115,831,723
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Downstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B05.bB6Ng01-027B05.g
ACCDH857921DH857922
length163799
definitionDH857921|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B05, 5' end.DH857922|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tataaccaacaggattcattttagctgaagttttggctagagacatttta
atgtctcagccaattatagggcagttcccatgtgggggaatcagcaaatc
aagttacctatcctttttgattttctcgaattttggtggggtttttttgg
tggaggtggttgt
gaattccatggatcttcctgcccctagctccctagtgttgagatgtgcat
gtcactgcacccagccttctgtgggagagtatccaaattcaggtttttat
gcctgtacttcatttaaagggttttttttcttttgatagagatatcaaac
tgagaatagtgtgtttgtatcttattacaaacattacaaagcattgccaa
aaatgtttagttaaagtttgcaaaatcatcctaaattattctttaaaaga
atagctatttgaaagtgtgtctcaaacatagtctataaatgtcatattaa
tttttattaaaaattgctcttatgccagaatttattaaaattttttatgt
ctatagtatttttgtgcccacagacttatttttttttattattagttttt
ttttgtttttttttttttggctttttgagacagggtttctctgtatagcc
ctggctgtcctggaactcactttgtagaccaggctggcctcgaactcaga
aatctgcctgcctctgcctcccgagtgctggaattaaagatgtgtgccac
cacgcctggctccacagacttattttaataattatatactttaaatataa
tatttattctttgagagtttcagagacatatacaatgtattttaatctta
tctacctatgtccttctaactcttgccagaattcaccaacccatttctgt
cttgacttcattccctttgtgattattacactttctaatagcccactgtg
tctaaccagcactgactgtatatggagggctatgagatcatccactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115831420_115831723
seq2: B6Ng01-027B05.g_337_627

seq1  TCTCAAACATAGTCTATTCATTAAATG-AACACGAA-ATTTATTAAATAG  48
      ||||||||||||||||     ||||||  | |  ||  ||||||||| | 
seq2  TCTCAAACATAGTCTA-----TAAATGTCATATTAATTTTTATTAAAAAT  45

seq1  TGTTGAT-TAAAAGAA---AAAAAAA-----AGTCCCTCTACCAT-----  84
      || |  | |   ||||   |  ||||       |  || ||  ||     
seq2  TGCTCTTATGCCAGAATTTATTAAAATTTTTTATGTCTATAGTATTTTTG  95

seq1  ----CAAAGACAACCACTGTTTTTTAAT-TTATTCCCTTCTAGGTTTATA  129
          || ||||    | | ||||||| | ||| |   || | | ||| | 
seq2  TGCCCACAGAC--TTATTTTTTTTTATTATTAGTTTTTTTTTGTTTTTTT  143

seq1  TTGAAAATGAAACCCAGAGCTCTCAACTCCCCCCCCCCCCCCGACAGGGT  179
      ||     ||         ||| |                   ||||||||
seq2  TT--TTTTG---------GCTTT---------------TTGAGACAGGGT  167

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTG  229
      |||||||| |||||||||||||||||||||||||| |||||| |||||||
seq2  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  217

seq1  GCCTCGAACTTAGAAATCCGTCTGCCTCTGCCTCCCAAGTGCTGGGATTA  279
      |||||||||| ||||||| | ||||||||||||||| |||||||| ||||
seq2  GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTA  267

seq1  AAGTTGTGTGCCACCATTGCCTGGC  304
      ||| ||||||||||||  |||||||
seq2  AAGATGTGTGCCACCA-CGCCTGGC  291