BAC Information

Click to search

BAC

Clone NameB6Ng01-027G06
Chromosome5 (Build37)
Map Location 41,079,027 - 41,249,815
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027G06.bB6Ng01-027G06.g
ACCDH858145DH858146
length507785
definitionDH858145|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G06, 5' end.DH858146|Mus musculus domesticus DNA, BAC clone: B6Ng01-027G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,079,027 - 41,079,533)(41,249,032 - 41,249,815)
sequence
gaattctcatgggcattgactctgttgactttacggatggtttcaggcag
acagacagctcctgtgcctaggaaatgatgggaacaaatggcagcagttg
agaggaaggaaaccaacttcagctaggatttagtatatttttgatctttt
ttttaaccttactttcacttctgaattttcaatgtttacaggtgctcatg
atctctggcattagaaataactgatttctccagctcctccattgggagcc
ctgtgatccatccattagctgactgtgagcatccacttctgtgtttgcta
ggccccggcatagtctcacaagagacagctacatcagggtcctttcgata
aaatcttgctagtgtatcaagtatatcgcttggtgtcagcgtttggatgc
tagtcggccatcactggaaagagaggcccattggacacgcaaactttata
tgccccagtacaggggaacgccagggccaaaaagggggagtgggtgggta
ggggatt
gaattcacatgttagttgtggcttcataagagatagagcagagtagtatc
agaaagtaatgaacactgtgtaagaaagaacacaggaaggaatgacaaag
actgtctaggaatggcaactgaactgaggatactgtgttcttttgctttc
tgtttcatatctgctttccacttgacctgacttggctcagctctggcagg
aagctaacagagggagaatgcattgcataaaagctcagtattccttcatt
attttgccagtagatgcctctcagagacttgacgagaggagcaaagccca
ggcatttatttccattactgtactgagctgccttactgttccacagacta
tagaattcctcattaagtgctgtgaactgaatcctacctttatgtcttta
tacttgcagatgactccgcatctacctcttattcaaagatacaagggatg
tttggatgcatgcatgcatgcgtgcgtgtgtgcgtgcttgtgtgcgtgtg
tgtgtgtgtggtgcatacttgatagaaaggagaataaaagtatacaggga
ccacaataaaagtgatgcttgaagagaaagtagaagagaggtgtgactgg
catagataatgatacagtaaacatgggatgaagtcttttggggagggagt
ggtacctttgttacctttgtttgtcagagctaacaaatcatgcctaaaga
aattttctaaaacaaaggaacagtgcagtgtgtgaatgttcattgttcct
ataggagaaaatcctctgttttgggtctaaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41079027_41079533
seq2: B6Ng01-027G06.b_39_545

seq1  GAATTCTCATGGGCATTGACTCTGTTGACTTCACGGATGGTTTCAGGCAG  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTCATGGGCATTGACTCTGTTGACTTTACGGATGGTTTCAGGCAG  50

seq1  ACAGACAGCTCCTGTGCCTAGGAAATGATGGGAACAAATGGCAGCAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGCTCCTGTGCCTAGGAAATGATGGGAACAAATGGCAGCAGTTG  100

seq1  AGAGGAAGGAAACCAACTTCAGCTAGGATTTAGTATATTTTTGATCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGAAACCAACTTCAGCTAGGATTTAGTATATTTTTGATCTTTT  150

seq1  TTTTAACCTTACTTTCACTTCTGAATTTTCAATGTTTACAGGTGCTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCTTACTTTCACTTCTGAATTTTCAATGTTTACAGGTGCTCATG  200

seq1  ATCTCTGGCATTAGAAATAACTGATTTCTCCAGCTCCTCCATTGGGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCATTAGAAATAACTGATTTCTCCAGCTCCTCCATTGGGAGCC  250

seq1  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  300

seq1  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCAGGGTCCTTTCGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCAGGGTCCTTTCGATA  350

seq1  AAATCTTGCTAGTGTATCAAGTATATCGCTTGGTGTCAGCGTTTGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGCTAGTGTATCAAGTATATCGCTTGGTGTCAGCGTTTGGATGC  400

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATA  450

seq1  TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTA  500

seq1  GGGGAGT  507
      ||||| |
seq2  GGGGATT  507

seq1: chr5_41249032_41249815
seq2: B6Ng01-027G06.g_69_853 (reverse)

seq1  ATGCTTCA-ACCCAAAACAGAGGA-TTTCTCCTATAAGTAACAATGAACA  48
      |||||| | ||||||||||||||| |||||||||| || |||||||||||
seq2  ATGCTTTAGACCCAAAACAGAGGATTTTCTCCTAT-AGGAACAATGAACA  49

seq1  TTCACACACTGCACTGTTCCTTTG-TTTAGAATATTTC-TTAGGCATTGA  96
      |||||||||||||||||||||||| ||||||| ||||| ||||||| |||
seq2  TTCACACACTGCACTGTTCCTTTGTTTTAGAAAATTTCTTTAGGCA-TGA  98

seq1  TTCTGTTAGCTCTGACAAACAAAGGTAACAAAGGTACCACTCCCTCCCCA  146
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-TGTTAGCTCTGACAAACAAAGGTAACAAAGGTACCACTCCCTCCCCA  147

seq1  AAAGACTTCATCCCATGTTTACTGTATCATTATCTATGCCAGTCACACCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTCATCCCATGTTTACTGTATCATTATCTATGCCAGTCACACCT  197

seq1  CTCTTCTACTTTCTCTTCAAGCATCACTTTTATTGTGGTCCCTGTATACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTACTTTCTCTTCAAGCATCACTTTTATTGTGGTCCCTGTATACT  247

seq1  TTTATTCTCCTTTCTATCAAGTATGCACCACACACACACACACGCACACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCCTTTCTATCAAGTATGCACCACACACACACACACGCACACA  297

seq1  AGCACGCACACACGCACGCATGCATGCATGCATCCAAACATCCCTTGTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCACACACGCACGCATGCATGCATGCATCCAAACATCCCTTGTAT  347

seq1  CTTTGAATAAGAGGTAGATGCGGAGTCATCTGCAAGTATAAAGACATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATAAGAGGTAGATGCGGAGTCATCTGCAAGTATAAAGACATAAA  397

seq1  GGTAGGATTCAGTTCACAGCACTTAATGAGGAATTCTATAGTCTGTGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATTCAGTTCACAGCACTTAATGAGGAATTCTATAGTCTGTGGAA  447

seq1  CAGTAAGGCAGCTCAGTACAGTAATGGAAATAAATGCCTGGGCTTTGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGCAGCTCAGTACAGTAATGGAAATAAATGCCTGGGCTTTGCTC  497

seq1  CTCTCGTCAAGTCTCTGAGAGGCATCTACTGGCAAAATAATGAAGGAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTCAAGTCTCTGAGAGGCATCTACTGGCAAAATAATGAAGGAATA  547

seq1  CTGAGCTTTTATGCAATGCATTCTCCCTCTGTTAGCTTCCTGCCAGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTTATGCAATGCATTCTCCCTCTGTTAGCTTCCTGCCAGAGCT  597

seq1  GAGCCAAGTCAGGTCAAGTGGAAAGCAGATATGAAACAGAAAGCAAAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGTCAGGTCAAGTGGAAAGCAGATATGAAACAGAAAGCAAAAGA  647

seq1  ACACAGTATCCTCAGTTCAGTTGCCATTCCTAGACAGTCTTTGTCATTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTATCCTCAGTTCAGTTGCCATTCCTAGACAGTCTTTGTCATTCC  697

seq1  TTCCTGTGTTCTTTCTTACACAGTGTTCATTACTTTCTGATACTACTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGTTCTTTCTTACACAGTGTTCATTACTTTCTGATACTACTCTG  747

seq1  CTCTATCTCTTATGAAGCCACAACTAACATGTGAATTC  784
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCTTATGAAGCCACAACTAACATGTGAATTC  785