BAC Information

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BAC

Clone NameB6Ng01-027P07
Chromosome5 (Build37)
Map Location 84,928,797 - 85,047,633
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P07.bB6Ng01-027P07.g
ACCDH858562DH858563
length1,108908
definitionDH858562|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P07, 5' end.DH858563|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,928,797 - 84,929,917)(85,046,723 - 85,047,633)
sequence
gaattccacaaaaccattttgtcacattttacagcttatttaaaatttct
tgacacttgagaacatcaaaagtgacaactaacaattaataacatttccc
ttcactatagattaaaagaaaaatactgattacaactagcatttaagacc
ccaggaaatgccattgtttttcttaagaagataccaactgagattaacaa
agcaccatgggttaataccttggaaggaatatgtgaaaggcacagtcagc
tcccataaaattgaagagttaaatagatgctgaaaaagcaatgttttcaa
caatgctgtactttcttattcatggagcaaaaccgccttaagactatact
gtattagaaaattaacatttaataatgagttcagtatctaatgttcaact
ttttggaatttctagagttaaagagtaaataattattttcatcatataac
acaatagtaaatctctacaatttttaaagctggcttataacttgctattt
tggcattgcaattatagactcagaatattcttaagtgggaatcgtttttg
aaatcatgaagaatgtagagactgattatcagtgtggtttggaaataagg
cacagatattaaaactacaattaaaactaaatttttttctcttatggaat
gtaaataatggccaatattattttggcttaaatactagatttaagacatg
gaatttcaggagaaatataaagaaatttctatatgcaagtattcataaca
aaaagaggaaaatatgatcatatacaataaaatatttgtcagctgttagg
atttatttgtaagggaatggcagatttattatacatataagttgttaaat
tatgtatcctgcgtccctttctttaatgaactataattttattgcagaga
ttgcaatataaatgtcagttataaatgtcagctataaatgtgatttcatt
tgtttctttgccttctcctcttatacacacacactatcacaacctcacat
tgttttcagagcttctagtattaagagcaactagaattggattaaaagcc
aacatatgatcacgatttgaattgaagaacaggcaagaggctataatccc
cataccta
gaattcacaggtgtaaaggactaactctcccaaggcttcccccaccctct
ttctgataggcagaagaggtagattgaagtcagaagtagggtattgcact
gttaactaaatttttggaggtttaattcctgccaatctagttaaggtttt
agcttaattaaggtaattgatttgcattcaatagatttaggatagagtct
tacagtccttatcagaagttaaacttgtttattttcttagggctttgaag
gctcttggactagaatatcctaaattactatatggttagttgcaataata
aagagagtaagtgtgcttatagttggtagggaaggaaggataaagttatt
tttgaagcatgtgtggtgggtaattattttgttatatctgtaatcgctgt
tagtaggaagttttccttctcataggagcattaatgttccttattctaac
aatgacaacatcttttctagctggttagaatagcaccaagcaggagaagg
ccaacatgtgactggggaagagcacagaacatcatttctggccagcctgg
gaaatgaattgcatgattttctcataccttaggtcccttcagatgtaccc
ttctgttcagagtatgttttcactaaaagctgaaatattttatcatttaa
acttggattttattactaatgtgaattattgtaaggaaacaattctttta
aaatgctgattcatatattaacttctgacttaccagtaattaatagagaa
aagtgacttaggagttatatttttagtcgaaggactagatctatatgcat
gttccattttcaaaaggttgagaatattgcatccagtgttggtagcagag
attgcaaatttaatgcttctagctattctttgatgctcccacttctatac
atgcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84928797_84929917
seq2: B6Ng01-027P07.b_43_1150

seq1  GAATTCCACAAAACCATTTTGTCACATTTTACAGCTTATTTAAAATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAAACCATTTTGTCACATTTTACAGCTTATTTAAAATTTCT  50

seq1  TGACACTTGAGAACATCAAAAGTGACAACTAACAATTAATAACATTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGAGAACATCAAAAGTGACAACTAACAATTAATAACATTTCCC  100

seq1  TTCACTATAGATTAAAAGAAAAATACTGATTACAACTAGCATTTAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATAGATTAAAAGAAAAATACTGATTACAACTAGCATTTAAGACC  150

seq1  CCAGGAAATGCCATTGTTTTTCTTAAGAAGATACCAACTGAGATTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATGCCATTGTTTTTCTTAAGAAGATACCAACTGAGATTAACAA  200

seq1  AGCACCATGGGTTAATACCTTGGAAGGAATATGTGAAAGGCACAGTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATGGGTTAATACCTTGGAAGGAATATGTGAAAGGCACAGTCAGC  250

seq1  TCCCATAAAATTGAAGAGTTAAATAGATGCTGAAAAAGCAATGTTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAAATTGAAGAGTTAAATAGATGCTGAAAAAGCAATGTTTTCAA  300

seq1  CAATGCTGTACTTTCTTATTCATGGAGCAAAACCGCCTTAAGACTATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGTACTTTCTTATTCATGGAGCAAAACCGCCTTAAGACTATACT  350

seq1  GTATTAGAAAATTAACATTTAATAATGAGTTCAGTATCTAATGTTCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGAAAATTAACATTTAATAATGAGTTCAGTATCTAATGTTCAACT  400

seq1  TTTTGGAATTTCTAGAGTTAAAGAGTAAATAATTATTTTCATCATATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATTTCTAGAGTTAAAGAGTAAATAATTATTTTCATCATATAAC  450

seq1  ACAATAGTAAATCTCTACAATTTTTAAAGCTGGCTTATAACTTGCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGTAAATCTCTACAATTTTTAAAGCTGGCTTATAACTTGCTATTT  500

seq1  TGGCATTGCAATTATAGACTCAGAATATTCTTAAGTGGGAATCGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGCAATTATAGACTCAGAATATTCTTAAGTGGGAATCGTTTTTG  550

seq1  AAATCATGAAGAATGTAGAGACTGATTATCAGTGTGGTTTGGAAATAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGAAGAATGTAGAGACTGATTATCAGTGTGGTTTGGAAATAAGG  600

seq1  CACAGATATTAAAACTACAATTAAAACTAAATTTTTTTCTCTTATGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATTAAAACTACAATTAAAACTAAATTTTTTTCTCTTATGGAAT  650

seq1  GTAAATAATGGCCAATATTATTTTGGCTTAAATACTAGATTTAAGACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATGGCCAATATTATTTTGGCTTAAATACTAGATTTAAGACATG  700

seq1  GAATTTCAGGAGAAATATAAAGAAATTTCTATATGCAAGTATTCATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGGAGAAATATAAAGAAATTTCTATATGCAAGTATTCATAACA  750

seq1  AAAAGAGGAAAATATGATCATATACAATAAAATATTTGTCAGCTGTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAAAATATGATCATATACAATAAAATATTTGTCAGCTGTTAGG  800

seq1  ATTTATTTGTAAGGGAAATGGCAGATTTATTATACATATAAG-TGTTAAA  849
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  ATTTATTTGTAAGGG-AATGGCAGATTTATTATACATATAAGTTGTTAAA  849

seq1  TTATGTATCCTGCGTTCCTTTCTTTTAATGAACTATAATTTTATTGGCAG  899
      ||||||||||||||| |||||| |||||||||||||||||||||| ||||
seq2  TTATGTATCCTGCGTCCCTTTC-TTTAATGAACTATAATTTTATT-GCAG  897

seq1  AGATTTGCAAATATAAATGTCAGTTATAAATGTCAGCTATATAATGTTGA  949
      ||| |||| |||||||||||||||||||||||||||||||| |||| |||
seq2  AGA-TTGC-AATATAAATGTCAGTTATAAATGTCAGCTATA-AATG-TGA  943

seq1  TTTCATTTGTTTTCTCTGCC-TCTCCTTCTTTATACACACACACTATCAC  998
      ||||||||| ||||| |||| ||||||   ||||||||||||||||||||
seq2  TTTCATTTG-TTTCTTTGCCTTCTCCT--CTTATACACACACACTATCAC  990

seq1  AACCTCACATTGTATTTCAGAGC-TCTAGTAATAAGAGCAACATAGAATT  1047
      ||||||||||||| ||||||||| ||||||| |||||||||| |||||||
seq2  AACCTCACATTGT-TTTCAGAGCTTCTAGTATTAAGAGCAAC-TAGAATT  1038

seq1  GGATTAAAAGCAGACATATTGATCAACGATTTGAATTGAAGACACAGGCA  1097
      |||||||||||  ||||| ||||| ||||||||||||||||| |||||||
seq2  GGATTAAAAGCCAACATA-TGATC-ACGATTTGAATTGAAGA-ACAGGCA  1085

seq1  TAGAGGC-ATAGATCCACATACCTA  1121
       |||||| ||| |||| ||||||||
seq2  -AGAGGCTATA-ATCCCCATACCTA  1108

seq1: chr5_85046723_85047633
seq2: B6Ng01-027P07.g_69_976 (reverse)

seq1  TCTTGCATGTATAGATGTGGGAGCATCAAAAGATAGCTAGAAGCATTAAA  50
      ||||||||||||||| ||||||||||||||  ||||||||||||||||||
seq2  TCTTGCATGTATAGAAGTGGGAGCATCAAAGAATAGCTAGAAGCATTAAA  50

seq1  AGTTTGCAGTCTCTGCTACCAACACTTGGATGCAATATTTACAACTTTTT  100
        |||||| |||||||||||||||| |||||||||||||  |||| ||||
seq2  --TTTGCAATCTCTGCTACCAACAC-TGGATGCAATATTCTCAACCTTTT  97

seq1  GAAAATGGAACATGCATATAGATCTAGTCCTTCGACTAAAAATTATAACT  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAAATGGAACATGCATATAGATCTAGTCCTTCGACTAAAAA-TATAACT  146

seq1  CCTAAGTCACTTTTCTCTATTTATTACTGGTAAGTCAGAAGTTAATATAT  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTAAGTCACTTTTCTCTATTAATTACTGGTAAGTCAGAAGTTAATATAT  196

seq1  GAATCAGCATTTTAAAAGAATTGTTTCCTTACAATAATTCACATTAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCATTTTAAAAGAATTGTTTCCTTACAATAATTCACATTAGTAA  246

seq1  TAAAATCCAAGTTTAAATGATAAAATATTTCAGCTTTTAGTGAAAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCAAGTTTAAATGATAAAATATTTCAGCTTTTAGTGAAAACATA  296

seq1  CTCTGAACAG-AGGGTACATCTGAAGGGACCTAAGGTATGAGAAAATCAT  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACAGAAGGGTACATCTGAAGGGACCTAAGGTATGAGAAAATCAT  346

seq1  GCAATTCATTTCCCAGGCTGGCCAGAAATGATGTTCTGTGCTCTTCCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCATTTCCCAGGCTGGCCAGAAATGATGTTCTGTGCTCTTCCCCA  396

seq1  GTCACATGTTGGCCTTCTCCTGCTTGGTGCTATTCTAACCAGCTAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGTTGGCCTTCTCCTGCTTGGTGCTATTCTAACCAGCTAGAAAA  446

seq1  GATGTTGTCATTGTTAGAATAAGGAACATTAATGCTCCTATGAGAAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTCATTGTTAGAATAAGGAACATTAATGCTCCTATGAGAAGGAA  496

seq1  AACTTCCTACTAACAGCGATTACAGATATAACAAAATAATTACCCACCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTACTAACAGCGATTACAGATATAACAAAATAATTACCCACCAC  546

seq1  ACATGCTTCAAAAATAACTTTATCCTTCCTTCCCTACCAACTATAAGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTCAAAAATAACTTTATCCTTCCTTCCCTACCAACTATAAGCAC  596

seq1  ACTTACTCTCTTTATTATTGCAACTAACCATATAGTAATTTAGGATATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTCTCTTTATTATTGCAACTAACCATATAGTAATTTAGGATATTC  646

seq1  TAGTCCAAGAGCCTTCAAAGCCCTAAGAAAATAAACAAGTTTAACTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAGAGCCTTCAAAGCCCTAAGAAAATAAACAAGTTTAACTTCTG  696

seq1  ATAAGGACTGTAAGACTCTATCCTAAATCTATTGAATGCAAATCAATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGACTGTAAGACTCTATCCTAAATCTATTGAATGCAAATCAATTAC  746

seq1  CTTAATTAAGCTAAAACCTTAACTAGATTGGCAGGAATTAAACCTCCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAAGCTAAAACCTTAACTAGATTGGCAGGAATTAAACCTCCAAA  796

seq1  AATTTAGTTAACAGTGCAATACCCTACTTCTGACTTCAATCTACCTCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTAACAGTGCAATACCCTACTTCTGACTTCAATCTACCTCTTC  846

seq1  TGCCTATCAGAAAGAGGGTGGGGGAAGCCTTGGGAGAGTTAGTCCTTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCAGAAAGAGGGTGGGGGAAGCCTTGGGAGAGTTAGTCCTTTAC  896

seq1  ACCTGTGAATTC  911
      ||||||||||||
seq2  ACCTGTGAATTC  908