BAC Information

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BAC

Clone NameB6Ng01-027P18
Chromosome5 (Build37)
Map Location 5,593,467 - 5,711,321
singlet/doubletdoublet
Overlap geneA330021E22Rik, Steap2
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705
Downstream geneSteap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027P18.bB6Ng01-027P18.g
ACCDH858584DH858585
length1,021607
definitionDH858584|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P18, 5' end.DH858585|Mus musculus domesticus DNA, BAC clone: B6Ng01-027P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,710,294 - 5,711,321)(5,593,467 - 5,594,073)
sequence
gaattcacaaagactcagtgaagaaatagataagcctactccctttattt
ttagcttgttctttccttcataagtgaaaacacgccgacagccttttcta
catctactgagaggatcatatggtctcctctgtaaactgctaactgagaa
gagttacattaacatagtctctggtgttaaagtcatttagcattctgagt
aataaacttgacaataatgtttcattgctgctttcagcttgttgggtttt
taaattaaattaaattaaattaaattagttgatgttccaaaacatgattg
tactgttgctgtcttagctcacagtgagttcaaaaggactcacacttact
tcctgaaaatctgtattctgtcagacagactggtcagtgtttgactattt
caatagttggactactagctaaacagtcagtttatttgctgattgtaaaa
ttgttcagtttattgtttacctcttcagacagatatatttagtatgttag
ttttcgatgttacccatgcattaaagctttcaaaatcagtcccagaatta
tttaggttggagagatagctcaagagatagtgtttgccctgtgagtgtga
aggccagaattcagatccctgcacccacaagaagccagacacggtggtgt
gtgcctgtaacgctgattgaatgctgtggaagggaggtcagaggatcctt
gggaggatcaataaccagccagacaaacagcaatctccaggcttagagag
agaccccattgcaaaaactaaaggaggagcagaaagcgtgctaatgcctt
tatacaagatcacccctcacaccgcccacactgaaagacttttccaagac
tttttaaaatctacatttatagacttctttaatggctttgaaaaagtaac
aaaagtaaaattaattgtttattattttagatacatatgaatctatttac
taactgacaccctataatatgtggctattatgatttccataaatgtaccc
ttgtgatgtgacttgtttcag

gaattccaacactcagaagtgagaggtaggaagatctctgtgagttccaa
gccagctgatttatatagtgagtttcaggatagcctgaaccacatagaga
gaccatgactcaaaacaaagcaaaacaacccaaaccccaaacaaataaac
aaacaaaaatccatcactaaatctgaacatagtttgaggcacgtttattc
aaaaaccctgttctttggtacttggtttgggaaaggttagtatggatgca
tttatgttttgtgttagagtactaactcgggttacagtaagtggatatta
cttactgctagtatatccaaaaggagaaaaatcccttccttttcaagaaa
ataatcttcagaatcataacatcccaaaatgcagcaccttcaattaaaag
aaagccattcagtcaacaaacatctgttattggaattaacttgtagatcc
tccttcctaccacagcatcgttaggcaattcttttactttattcctctaa
accaagtaggtaatttgttttactttaaaaatagaaaccctgaagaagct
ctataaatgtgattcaattgtaatcttttcaagagtttatgtgtgtgtgt
gtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5710294_5711321
seq2: B6Ng01-027P18.b_44_1064 (reverse)

seq1  CTGAAACATGTCACATCACCAAGTGTACCATTTTATGGAAATCATTAATA  50
      |||||||| ||||||||| |||| ||||   ||||||||||||| |||||
seq2  CTGAAACAAGTCACATCA-CAAGGGTAC--ATTTATGGAAATCA-TAATA  46

seq1  GCCACATATTATAGGGTGTCAGTTAGTTAAATAGATTCATATTGTATCTT  100
      |||||||||||||||||||||||||| |||||||||||||| |||||| |
seq2  GCCACATATTATAGGGTGTCAGTTAG-TAAATAGATTCATA-TGTATC-T  93

seq1  AAAATAATAAACAATTAATTTTACTTTTGTTACTTTTTCAAAGCCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAACAATTAATTTTACTTTTGTTACTTTTTCAAAGCCATTAA  143

seq1  AGAAGTCTATAAATGTAGATTTTAAAAAGTCTTGGAAAAGTCTTTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTATAAATGTAGATTTTAAAAAGTCTTGGAAAAGTCTTTCAGTG  193

seq1  TGGGCGGTGTGAGGGGTGATCTTGTATTAAAGGCATTAGCACGCCTTCTG  250
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TGGGCGGTGTGAGGGGTGATCTTGTA-TAAAGGCATTAGCACGCTTTCTG  242

seq1  CTCCTCC-TTAGTTTTTGCAATGGGGTCTCTCTCTAAGCCTGGAGATTGC  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTTAGTTTTTGCAATGGGGTCTCTCTCTAAGCCTGGAGATTGC  292

seq1  TGTTTGTCTGGCTGGTTATTGATCCTCCCAAGGATCCTCTGACCTCCCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTGGCTGGTTATTGATCCTCCCAAGGATCCTCTGACCTCCCTT  342

seq1  CCACAGCATTCAATCAGCGTTACAGGCACACACCACCGTGTCTGGCTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATTCAATCAGCGTTACAGGCACACACCACCGTGTCTGGCTTCT  392

seq1  TGTGGGTGCAGGGATCTGAATTCTGGCCTTCACACTCACAGGGCAAACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCAGGGATCTGAATTCTGGCCTTCACACTCACAGGGCAAACAC  442

seq1  TATCTCTTGAGCTATCTCTCCAACCTAAATAATTCTGGGACTGATTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTGAGCTATCTCTCCAACCTAAATAATTCTGGGACTGATTTTGA  492

seq1  AAGCTTTAATGCATGGGTAACATCGAAAACTAACATACTAAATATATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAATGCATGGGTAACATCGAAAACTAACATACTAAATATATCTG  542

seq1  TCTGAAGAGGTAAACAATAAACTGAACAATTTTACAATCAGCAAATAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGGTAAACAATAAACTGAACAATTTTACAATCAGCAAATAAAC  592

seq1  TGACTGTTTAGCTAGTAGTCCAACTATTGAAATAGTCAAACACTGACCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTAGCTAGTAGTCCAACTATTGAAATAGTCAAACACTGACCAG  642

seq1  TCTGTCTGACAGAATACAGATTTTCAGGAAGTAAGTGTGAGTCCTTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGACAGAATACAGATTTTCAGGAAGTAAGTGTGAGTCCTTTTGA  692

seq1  ACTCACTGTGAGCTAAGACAGCAACAGTACAATCATGTTTTGGAACATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTGAGCTAAGACAGCAACAGTACAATCATGTTTTGGAACATCA  742

seq1  ACTAATTTAATTTAATTTAATTTAATTTAAAAACCCAACAAGCTGAAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTAATTTAATTTAATTTAATTTAAAAACCCAACAAGCTGAAAGC  792

seq1  AGCAATGAAACATTATTGTCAAGTTTATTACTCAGAATGCTAAATGACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAACATTATTGTCAAGTTTATTACTCAGAATGCTAAATGACTT  842

seq1  TAACACCAGAGACTATGTTAATGTAACTCTTCTCAGTTAGCAGTTTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAGAGACTATGTTAATGTAACTCTTCTCAGTTAGCAGTTTACAG  892

seq1  AGGAGACCATATGATCCTCTCAGTAGATGTAGAAAAGGCTGTCGGCGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCATATGATCCTCTCAGTAGATGTAGAAAAGGCTGTCGGCGTGT  942

seq1  TTTCACTTATGAAGGAAAGAACAAGCTAAAAATAAAGGGAGTAGGCTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTATGAAGGAAAGAACAAGCTAAAAATAAAGGGAGTAGGCTTAT  992

seq1  CTATTTCTTCACTGAGTCTTTGTGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  CTATTTCTTCACTGAGTCTTTGTGAATTC  1021


seq1: chr5_5593467_5594073
seq2: B6Ng01-027P18.g_70_676

seq1  GAATTCCAACACTCAGAAGTGAGAGGTAGGAAGATCTCTGTGAGTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACTCAGAAGTGAGAGGTAGGAAGATCTCTGTGAGTTCCAA  50

seq1  GCCAGCTGATTTATATAGTGAGTTTCAGGATAGCCTGAACCACATAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGATTTATATAGTGAGTTTCAGGATAGCCTGAACCACATAGAGA  100

seq1  GACCATGACTCAAAACAAAGCAAAACAACCCAAACCCCAAACAAATAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGACTCAAAACAAAGCAAAACAACCCAAACCCCAAACAAATAAAC  150

seq1  AAACAAAAATCCATCACTAAATCTGAACATAGTTTGAGGCACGTTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATCCATCACTAAATCTGAACATAGTTTGAGGCACGTTTATTC  200

seq1  AAAAACCCTGTTCTTTGGTACTTGGTTTGGGAAAGGTTAGTATGGATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTGTTCTTTGGTACTTGGTTTGGGAAAGGTTAGTATGGATGCA  250

seq1  TTTATGTTTTGTGTTAGAGTACTAACTCGGGTTACAGTAAGTGGATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTTGTGTTAGAGTACTAACTCGGGTTACAGTAAGTGGATATTA  300

seq1  CTTACTGCTAGTATATCCAAAAGGAGAAAAATCCCTTCCTTTTCAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCTAGTATATCCAAAAGGAGAAAAATCCCTTCCTTTTCAAGAAA  350

seq1  ATAATCTTCAGAATCATAACATCCCAAAATGCAGCACCTTCAATTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTCAGAATCATAACATCCCAAAATGCAGCACCTTCAATTAAAAG  400

seq1  AAAGCCATTCAGTCAACAAACATCTGTTATTGGAATTAACTTGTAGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTCAGTCAACAAACATCTGTTATTGGAATTAACTTGTAGATCC  450

seq1  TCCTTCCTACCACAGCATCGTTAGGCAATTCTTTTACTTTATTCCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTACCACAGCATCGTTAGGCAATTCTTTTACTTTATTCCTCTAA  500

seq1  ACCAAGTAGGTAATTTGTTTTACTTTAAAAATAGAAACCCTGAAGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGGTAATTTGTTTTACTTTAAAAATAGAAACCCTGAAGAAGCT  550

seq1  CTATAAATGTGATTCAATTGTAATCTTTTCAAGAGTTTATGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGTGATTCAATTGTAATCTTTTCAAGAGTTTATGTGTGTGTGT  600

seq1  GTGTGTG  607
      |||||||
seq2  GTGTGTG  607


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