BAC Information

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BAC

Clone NameB6Ng01-028F21
Chromosome5 (Build37)
Map Location 32,411,055 - 32,541,680
singlet/doubletdoublet
Overlap geneFosl2, LOC672217, Plb1
Upstream geneDnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
Downstream geneEG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028F21.bB6Ng01-028F21.g
ACCDH858864DH858865
length1,0081,179
definitionDH858864|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F21, 5' end.DH858865|Mus musculus domesticus DNA, BAC clone: B6Ng01-028F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,540,669 - 32,541,680)(32,411,055 - 32,412,246)
sequence
gaattcctgtaggctgaacatcccaattctttgtcaggtagcatttctaa
aatgcctttcactcacctgtccctgtccttcaatgtggcttctgttccca
ccatgccattaaaagttcttgaaggtcagtagtttgctgaatccaacaga
cagcaatggatcctcataccttctcccactgcttgtctcaacagagtgtg
agtgctggcttctactgctttcttgagatactagcactgtctggggttcc
tggttttgtctggccactcctcctctggcctggaccctcctctgctggtt
ctcaaggcaaccataccagcccttggctttatttaaagcttgtgtgtcaa
tcattcctacattcccacttccagacagacctttattctgagcttcaagc
cccataaactcattcattgactcaataccctccctttgatgtctgtgggt
tcctcgggatctggaagggtagaactggccacatcattcttctgctatcg
ttttttagccctacaggaaacagtagtggccattgcagacagacccagac
aatatccaggggatctcctgctcagtccagcagatcaccaatggctgagt
cccatcaattctgtattccagttcctggaccaaggtaggcccagcctacc
tggctaaatgtctccagttatatttctacttctatgtctttctctccctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttaactatattagcctgaacaatcttgtcagcatata
agcctaatgtcacatcctgtataaaaccccttagacatgttcccatttcc
ctttagtcagagactgatcatctcagcaaggtccataaagccctgtgtgc
ctttctccattctcaatcccacattctctccttattttatacacactcat
acacacacacacacacaacacacatcagacacccatatatacacacccac
ccacaaac
gaattctgtagactaggttggcctcaaactcagagatccaccttcctctg
cctcccaagtgctgggactaaaggtgtacgccaccactgcctggtgccag
aaggtgtttttgagggacagtgtaagcagtgcttctcaaccttcctgaag
ctgtgaccctttaatacaattcctcatgttgtggtgattcccagccataa
aattattttgttgctacttcataactgtaatcttgctgctgttatgaatt
gtaatgtaaatatctgatgtgctaacaccagaggggtcaagacccacagg
ttgagaaccactgcgctgagccatgcatgttgagggaagtctccagccca
tcctagagagccaacattcctgaggtggccattgggacaagatacatttc
cacttggtttggagcttgatctcggctggtggctgagtgtgtccagtccc
ctctagcttctctgccccatcaagtcttagttgactacactgaccttctc
cccacccatggctctggccctttggccctacatacttatccttcagctgt
ttcctgaaggatactgtgacagtgttttctagacagatctaagcagtcaa
gtctcctctggatcagagtgtcaatgcctctcaatggccatgagaaagag
cagactcctgagccttgcaaggtggccccattctcaccctccctcaagcc
ctcaagagaatcccatacttcaaaccaaagggcttacgcctctcaggctc
caggttcggcacttgcccggaaaacagatgagtttgggaaccagatgggt
aagttacatgacgctaaaatggacaaggctctagatgaatgcatgaagac
tttattagagagaattttagacagaagacaagggagaccaccctatgatg
acagagcaggatcagttgagacacatgccagtcaggcacttagaaattgc
taacccaagcccgaagctagtagagaagcaagatgtgtgaaggtgttaga
gccttcagatgacgcagcatacaagaactgtgggagaactaggcctccaa
tgctctcactggacttctggcactggaacagccctgtctacctcttcagt
gtctagaaaagtaaagtcaactattcttattggcttgcacttttaccgag
aaaggcttctctgtgatggatattaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32540669_32541680
seq2: B6Ng01-028F21.b_44_1051 (reverse)

seq1  GTTTGTGTGTGTGTGTGTATATATGGGTGTCTGATTGTGTGTTTGTGTGT  50
      ||||||| ||| |||||||||||||||||||||| |||||| ||||||||
seq2  GTTTGTGGGTGGGTGTGTATATATGGGTGTCTGA-TGTGTG-TTGTGTGT  48

seq1  GTGTGTGTGTATGAGTGTGTATAAAATAAGGAGAGAATGTGGGATTTGAG  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTGTGTGTATGAGTGTGTATAAAATAAGGAGAGAATGTGGGA-TTGAG  97

seq1  AATGGAGAAAAGGCACACAGGGCCTTATGGACCTTGCTGAGATGATCAGT  150
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AATGGAG-AAAGGCACACAGGGCTTTATGGACCTTGCTGAGATGATCAGT  146

seq1  CTCTGACTAAAGGGAAATGGGAACATGTCTAAGGGGTTTTATACAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTAAAGGGAAATGGGAACATGTCTAAGGGGTTTTATACAGGATG  196

seq1  TGACATTAGGCTTATATGCTGACAAGATTGTTCAGGCTAATATAGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAGGCTTATATGCTGACAAGATTGTTCAGGCTAATATAGTTAAA  246

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  296

seq1  AAGAAAGAAAGAAAGGGAGAGAAAGACATAGAAGTAGAAATATAACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGGGAGAGAAAGACATAGAAGTAGAAATATAACTGGA  346

seq1  GACATTTAGCCAGGTAGGCTGGGCCTACCTTGGTCCAGGAACTGGAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAGCCAGGTAGGCTGGGCCTACCTTGGTCCAGGAACTGGAATAC  396

seq1  AGAATTGATGGGACTCAGCCATTGGTGATCTGCTGGACTGAGCAGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGATGGGACTCAGCCATTGGTGATCTGCTGGACTGAGCAGGAGAT  446

seq1  CCCCTGGATATTGTCTGGGTCTGTCTGCAATGGCCACTACTGTTTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGATATTGTCTGGGTCTGTCTGCAATGGCCACTACTGTTTCCTGT  496

seq1  AGGGCTAAAAAACGATAGCAGAAGAATGATGTGGCCAGTTCTACCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAAAAACGATAGCAGAAGAATGATGTGGCCAGTTCTACCCTTCC  546

seq1  AGATCCCGAGGAACCCACAGACATCAAAGGGAGGGTATTGAGTCAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCGAGGAACCCACAGACATCAAAGGGAGGGTATTGAGTCAATGAA  596

seq1  TGAGTTTATGGGGCTTGAAGCTCAGAATAAAGGTCTGTCTGGAAGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATGGGGCTTGAAGCTCAGAATAAAGGTCTGTCTGGAAGTGGGA  646

seq1  ATGTAGGAATGATTGACACACAAGCTTTAAATAAAGCCAAGGGCTGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAATGATTGACACACAAGCTTTAAATAAAGCCAAGGGCTGGTAT  696

seq1  GGTTGCCTTGAGAACCAGCAGAGGAGGGTCCAGGCCAGAGGAGGAGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTTGAGAACCAGCAGAGGAGGGTCCAGGCCAGAGGAGGAGTGGC  746

seq1  CAGACAAAACCAGGAACCCCAGACAGTGCTAGTATCTCAAGAAAGCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAACCAGGAACCCCAGACAGTGCTAGTATCTCAAGAAAGCAGTA  796

seq1  GAAGCCAGCACTCACACTCTGTTGAGACAAGCAGTGGGAGAAGGTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGCACTCACACTCTGTTGAGACAAGCAGTGGGAGAAGGTATGAG  846

seq1  GATCCATTGCTGTCTGTTGGATTCAGCAAACTACTGACCTTCAAGAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTGCTGTCTGTTGGATTCAGCAAACTACTGACCTTCAAGAACTT  896

seq1  TTAATGGCATGGTGGGAACAGAAGCCACATTGAAGGACAGGGACAGGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCATGGTGGGAACAGAAGCCACATTGAAGGACAGGGACAGGTGA  946

seq1  GTGAAAGGCATTTTAGAAATGCTACCTGACAAAGAATTGGGATGTTCAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCATTTTAGAAATGCTACCTGACAAAGAATTGGGATGTTCAGC  996

seq1  CTACAGGAATTC  1012
      ||||||||||||
seq2  CTACAGGAATTC  1008

seq1: chr5_32411055_32412246
seq2: B6Ng01-028F21.g_65_1243

seq1  GAATTCTGTAGACTAGGTTGGCCTCAAACTCAGAGATCCACCTTCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGACTAGGTTGGCCTCAAACTCAGAGATCCACCTTCCTCTG  50

seq1  CCTCCCAAGTGCTGGGACTAAAGGTGTACGCCACCACTGCCTGGTGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGCTGGGACTAAAGGTGTACGCCACCACTGCCTGGTGCCAG  100

seq1  AAGGTGTTTTTGAGGGACAGTGTAAGCAGTGCTTCTCAACCTTCCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTTTGAGGGACAGTGTAAGCAGTGCTTCTCAACCTTCCTGAAG  150

seq1  CTGTGACCCTTTAATACAATTCCTCATGTTGTGGTGATTCCCAGCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCTTTAATACAATTCCTCATGTTGTGGTGATTCCCAGCCATAA  200

seq1  AATTATTTTGTTGCTACTTCATAACTGTAATCTTGCTGCTGTTATGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTGTTGCTACTTCATAACTGTAATCTTGCTGCTGTTATGAATT  250

seq1  GTAATGTAAATATCTGATGTGCTAACACCAGAGGGGTCAAGACCCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTAAATATCTGATGTGCTAACACCAGAGGGGTCAAGACCCACAGG  300

seq1  TTGAGAACCACTGCGCTGAGCCATGCATGTTGAGGGAAGTCTCCAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACCACTGCGCTGAGCCATGCATGTTGAGGGAAGTCTCCAGCCCA  350

seq1  TCCTAGAGAGCCAACATTCCTGAGGTGGCCATTGGGACAAGATACATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGAGCCAACATTCCTGAGGTGGCCATTGGGACAAGATACATTTC  400

seq1  CACTTGGTTTGGAGCTTGATCTCGGCTGGTGGCTGAGTGTGTCCAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTTTGGAGCTTGATCTCGGCTGGTGGCTGAGTGTGTCCAGTCCC  450

seq1  CTCTAGCTTCTCTGCCCCATCAAGTCTTAGTTGACTACACTGACCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTTCTCTGCCCCATCAAGTCTTAGTTGACTACACTGACCTTCTC  500

seq1  CCCACCCATGGCTCTGGCCCTTTGGCCCTACATACTTATCCTTCAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATGGCTCTGGCCCTTTGGCCCTACATACTTATCCTTCAGCTGT  550

seq1  TTCCTGAAGGATACTGTGACAGTGTTTTCTAGACAGATCTAAGCAGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGGATACTGTGACAGTGTTTTCTAGACAGATCTAAGCAGTCAA  600

seq1  GTCTCCTCTGGATCAGAGTGTCAATGCCTCTCAATGGCCATGAGAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCTGGATCAGAGTGTCAATGCCTCTCAATGGCCATGAGAAAGAG  650

seq1  CAGACTCCTGAGCCTTGCAAGGTGGCCCCATTCTCACCCTCCCTCAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTGAGCCTTGCAAGGTGGCCCCATTCTCACCCTCCCTCAAGCC  700

seq1  CTCAAGAGAATCCCATACTTCAAACCAAAGGGCTTACGCCTCTCAGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGAATCCCATACTTCAAACCAAAGGGCTTACGCCTCTCAGGCTC  750

seq1  CAGGTTCGGCACTTGCCCGGAAAACAGATGAGTTTGGGAACCAGATGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCGGCACTTGCCCGGAAAACAGATGAGTTTGGGAACCAGATGGGT  800

seq1  AAGTTACATGACGCTAAAATGGACAAGGCTCTAGATGAATGCATGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATGACGCTAAAATGGACAAGGCTCTAGATGAATGCATGAAGAC  850

seq1  TTTATTAGAGAGAATTTTAGACAGAAAGACAAGGGAGACCACCCTATGAT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTATTAGAGAGAATTTTAGACAG-AAGACAAGGGAGACCACCCTATGAT  899

seq1  GACAGAGCAGGGATCAGTTGAGACACATGCCAGTCAGGCACTTAGAAATT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCA-GGATCAGTTGAGACACATGCCAGTCAGGCACTTAGAAATT  948

seq1  GCTAACCCAAGCCCGAAGCTAGTAGAGAAGCAGGATGTGTG-AGGTGTTA  999
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GCTAACCCAAGCCCGAAGCTAGTAGAGAAGCAAGATGTGTGAAGGTGTTA  998

seq1  GAGCCTCCAGAAGGACGCAGCATACAAGACCTGTGGGAGACCTAGGCTCC  1049
      |||||| ||| | |||||||||||||||| |||||||||| ||||||  |
seq2  GAGCCTTCAG-ATGACGCAGCATACAAGAACTGTGGGAGAACTAGGCCTC  1047

seq1  CAATGCTCTCACTGGACTTCCTGGCAGCTGAAGCAAGCTCTGCTCACCTC  1099
      ||||||||||||||||||| |||||| ||| | | ||| |||   |||||
seq2  CAATGCTCTCACTGGACTT-CTGGCA-CTGGAAC-AGCCCTGTCTACCTC  1094

seq1  TTCAGTCGTCTAGAATAGTTAAGTCTACATTTCCTTATGTGGCTTGCACC  1149
      |||||| |||||||| ||| ||||| || | | ||||| |||||||||| 
seq2  TTCAGT-GTCTAGAAAAGTAAAGTCAAC-TATTCTTAT-TGGCTTGCAC-  1140

seq1  ATTCTACTGAGAGAGGCTATCTCTGTGAAATGGATATTAAATG  1192
       || ||| |||| ||||| ||||||||  ||||||||||||||
seq2  -TTTTACCGAGAAAGGCT-TCTCTGTG--ATGGATATTAAATG  1179