BAC Information

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BAC

Clone NameB6Ng01-029P13
Chromosome5 (Build37)
Map Location 122,948,876 - 123,115,619
singlet/doubletdoublet
Overlap geneAtp2a2, Ift81, P2rx7
Upstream geneAdam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
Downstream geneP2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P13.bB6Ng01-029P13.g
ACCDH860016DH860017
length1,1831,133
definitionDH860016|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P13, 5' end.DH860017|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,114,420 - 123,115,619)(122,948,876 - 122,950,019)
sequence
gaattccatgccagcctgggctacctaacgcgacccgctctcaaagaact
gaaaatggtcagttcatcagtggtggcgcacacctttaatcccagcacac
cgagggaggcagaggaaggaggagctctgagtttgaggccagcctggtct
acagagtgagttcctgaacaaccaggtatacacagaggaccacacactca
cccccatctcaaaaaacaaaacaaaacaaaacccaaacgaaaacaataag
tccttgtggccactgaaacaagatgcttggttgctggctttaaagatgga
ggaagtgactgccaaccaatacataaatacaggacatcccctccccccca
gggtggaaatgcaaacaagcgctcttccctggagcctccagcgggagtgc
attgctgttgacacctggaggtcagccgaatctggactttgactccagac
acagagaaaagacatatgctactatttttttaaaaaagatttatatatct
atattatatatgtgagtacactgtccctgtcttcagacacagtagaagag
ggcatcggatcccattaaagatggttgtgagccatcatgtggttgctagg
gattgaactcaggacctctggaagagcaatcagggctcttaactgctgag
ccactccccagccccaacatatgttattttaagctggcatgttagtggta
agttgctaccacaatcagggggagaaatgcacctcacaagtagctcactc
aggactgtgggattccttgaaagaatatagggaaagtccctgggcactgg
gtatagttgaccgaatataaattgagtcgtgacttcagaatccagaatgt
cagcctctaccatcagatgctgtcacttgacatttgacaccctccacccc
accccccataaaaccactgtacagagacctcaccaacctgaactgccacc
tctgtaaagtctctcctgcttctggaagatgtccctagtcgaagatggaa
cactgaggtcccaagtcttgtgaaagtacaagagccgttcatagttggca
gatgttctcctgtgcagaattgcaaatcaaatgaattacttatacatcat
tctctctaaagaaaaccaaaaacctgatcatagctgctgatatcagggta
aattcctccacccactgctatcaagctcactcg
gaattccaagtagttattgaaaatgaacttatatttcaactaccaacagg
caatgtcttctctatcacaaaaactgttaagcacttcaaatttgaaaatt
agaataaattcctaattactccaaagtaaaatttatctataatcattaat
tctgcttgataaaaagtcaaactgtccacaaacaatttgaaaccttctga
aatccaatagaaaataacttggcacatatttcacttgttcacttcacatg
ttcacttggcacatttctaaaactgcttcaaataatatgaaagggaccag
taagaatgcattttgcctacagcttgtatatatcatctagttaatttcta
attctaagtccttgatggccttagtgaatggcaccatttaatgcgaaagc
agagacttccagaatgatgtagcctgcataaatacaaaccttaaacaacc
cccacatatataacttattttagcacatggcaacacgctcaaactataat
caactccatttatcttgtttacaaatgaaacaaccacctattggacaaaa
tttttaaaaattaatcacaaaaagatattatatataagaagtacagagta
aataactcagcagtatgctgaatggtctcctatgggaatctaataaattt
tattcagtgaaaaccacaggtgaaattcttacgaaatgagctagcgagta
aggggtacacaacacgtagatgacaaaccaaagtttcaggagaaaattca
tgtatacaactgctcctaaaagtcccctttgctgccaattaactattatt
ttaaaaatagctaaaaaattaatctttcctttacctgaattcagtaagtt
ctctaaacaatcctctaagctaatgttttcatagaggccatgaccacaga
acccctgggtcagacttaaacgtgtgaatacataattgaaaccatacagt
tatcagttttgtgaaacctaagacaagtactgtatgatttttcactttct
atcacagtataagaatacatgttctaagaataaaaattggcgtgtgttat
gaagatagaacatctgcatatcattattaccattaaagaactataaggtc
cactgcccaggaaaaaatctggagtaaatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123114420_123115619
seq2: B6Ng01-029P13.b_43_1225 (reverse)

seq1  CGAGTTGGAGCTTGATAGCAGCTGGGGTGGAGGGATTTACACCTCGGTAA  50
      |||||  ||||||||||||||   ||||||||| |||||| |||  |  |
seq2  CGAGT--GAGCTTGATAGCAG--TGGGTGGAGGAATTTAC-CCT--GATA  43

seq1  TCAGCAGGCCTTATGTATCAGGCTTTTGTTTTCCTTTTAGAGAGATGGTT  100
      |||||||    |||| |||||| ||||| ||| | ||||||||||  | |
seq2  TCAGCAG---CTATG-ATCAGGTTTTTGGTTTTC-TTTAGAGAGAATGAT  88

seq1  GTTAAAGT-ATCCATTTG-TTTGCAATTCTGCACAGGAGAAACATCTTGC  148
      ||  |||| || |||||| |||||||||||||||||||| |||||| |||
seq2  GTATAAGTAATTCATTTGATTTGCAATTCTGCACAGGAG-AACATC-TGC  136

seq1  CAACTATGAACGGCTCTTGTACCTTTCACAAGACTTGGGACCCTCAGTGT  198
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  CAACTATGAACGGCTCTTGTA-CTTTCACAAGACTTGGGA-CCTCAGTGT  184

seq1  TCCATCTTCCGACTAGGGGACATCTTCCAGGAAGCAGGAGAGAACTTTAC  248
      |||||||| |||||| ||||||||||||| |||||||||||| |||||||
seq2  TCCATCTT-CGACTA-GGGACATCTTCCA-GAAGCAGGAGAG-ACTTTAC  230

seq1  AGAGGTGGCAGTTCAGGTTGGTGAGGTCTCTGTACAGTGGTTTTATGGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGCAGTTCAGGTTGGTGAGGTCTCTGTACAGTGGTTTTATGGGG  280

seq1  GGTGGGGTGGAGGGTGTCAAATGTCAAGTGACAGCATCTGATGGTAGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGAGGGTGTCAAATGTCAAGTGACAGCATCTGATGGTAGAGG  330

seq1  CTGACATTCTGGGTTCTGAAGTCACGACTCAATTTATATTCGGTCAACTA  398
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCTGGATTCTGAAGTCACGACTCAATTTATATTCGGTCAACTA  380

seq1  TACCCAGTGCCCAGGG-CTTTCCCTATATTCTTTCAAGGAATCCCACAGT  447
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACCCAGTGCCCAGGGACTTTCCCTATATTCTTTCAAGGAATCCCACAGT  430

seq1  CCTGAGTGAGCTACTTGTGAGGTGCATTTCTCCCCCTGATTGTGGTAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGCTACTTGTGAGGTGCATTTCTCCCCCTGATTGTGGTAGCA  480

seq1  ACTTACCACTAACATGCCAGCTTAAAATAACATATGTTGGGGCTGGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCACTAACATGCCAGCTTAAAATAACATATGTTGGGGCTGGGGAG  530

seq1  TGGCTCAGCAGTTAAGAGCCCTGATTGCTCTTCCAGAGGTCCTGAGTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCAGTTAAGAGCCCTGATTGCTCTTCCAGAGGTCCTGAGTTCA  580

seq1  ATCCCTAGCAACCACATGATGGCTCACAACCATCTTTAATGGGATCCGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGCAACCACATGATGGCTCACAACCATCTTTAATGGGATCCGAT  630

seq1  GCCCTCTTCTACTGTGTCTGAAGACAGGGACAGTGTACTCACATATATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTACTGTGTCTGAAGACAGGGACAGTGTACTCACATATATAA  680

seq1  TATAGATATATAAATCTTTTTTAAAAAAATAGTAGCATATGTCTTTTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATATATAAATCTTTTTTAAAAAAATAGTAGCATATGTCTTTTCTC  730

seq1  TGTGTCTGGAGTCAAAGTCCAGATTCGGCTGACCTCCAGGTGTCAACAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGAGTCAAAGTCCAGATTCGGCTGACCTCCAGGTGTCAACAGC  780

seq1  AATGCACTCCCGCTGGAGGCTCCAGGGAAGAGCGCTTGTTTGCATTTCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTCCCGCTGGAGGCTCCAGGGAAGAGCGCTTGTTTGCATTTCCA  830

seq1  CCCTGGGGGGGAGGGGATGTCCTGTATTTATGTATTGGTTGGCAGTCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGGGGAGGGGATGTCCTGTATTTATGTATTGGTTGGCAGTCACT  880

seq1  TCCTCCATCTTTAAAGCCAGCAACCAAGCATCTTGTTTCAGTGGCCACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATCTTTAAAGCCAGCAACCAAGCATCTTGTTTCAGTGGCCACAA  930

seq1  GGACTTATTGTTTTCGTTTGGGTTTTGTTTTGTTTTGTTTTTTGAGATGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTATTGTTTTCGTTTGGGTTTTGTTTTGTTTTGTTTTTTGAGATGG  980

seq1  GGGTGAGTGTGTGGTCCTCTGTGTATACCTGGTTGTTCAGGAACTCACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGTGTGTGGTCCTCTGTGTATACCTGGTTGTTCAGGAACTCACTC  1030

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAGCTCCTCCTTCCTCTGCCTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCAAACTCAGAGCTCCTCCTTCCTCTGCCTCCC  1080

seq1  TCGGTGTGCTGGGATTAAAGGTGTGCGCCACCACTGATGAACTGACCATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTGCTGGGATTAAAGGTGTGCGCCACCACTGATGAACTGACCATT  1130

seq1  TTCAGTTCTTTGAGAGCGGGTCGCGTTAGGTAGCCCAGGCTGGCATGGAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTTTGAGAGCGGGTCGCGTTAGGTAGCCCAGGCTGGCATGGAA  1180

seq1  TTC  1200
      |||
seq2  TTC  1183

seq1: chr5_122948876_122950019
seq2: B6Ng01-029P13.g_68_1200

seq1  GAATTCCAAGTAGTTATTGAAAATGAACTTATATTTCAACTACCAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTAGTTATTGAAAATGAACTTATATTTCAACTACCAACAGG  50

seq1  CAATGTCTTCTCTATCACAAAAACTGTTAAGCACTTCAAATTTGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTCTCTATCACAAAAACTGTTAAGCACTTCAAATTTGAAAATT  100

seq1  AGAATAAATTCCTAATTACTCCAAAGTAAAATTTATCTATAATCATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTCCTAATTACTCCAAAGTAAAATTTATCTATAATCATTAAT  150

seq1  TCTGCTTGATAAAAAGTCAAACTGTCCACAAACAATTTGAAACCTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGATAAAAAGTCAAACTGTCCACAAACAATTTGAAACCTTCTGA  200

seq1  AATCCAATAGAAAATAACTTGGCACATATTTCACTTGTTCACTTCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATAGAAAATAACTTGGCACATATTTCACTTGTTCACTTCACATG  250

seq1  TTCACTTGGCACATTTCTAAAACTGCTTCAAATAATATGAAAGGGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGCACATTTCTAAAACTGCTTCAAATAATATGAAAGGGACCAG  300

seq1  TAAGAATGCATTTTGCCTACAGCTTGTATATATCATCTAGTTAATTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCATTTTGCCTACAGCTTGTATATATCATCTAGTTAATTTCTA  350

seq1  ATTCTAAGTCCTTGATGGCCTTAGTGAATGGCACCATTTAATGCGAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGTCCTTGATGGCCTTAGTGAATGGCACCATTTAATGCGAAAGC  400

seq1  AGAGACTTCCAGAATGATGTAGCCTGCATAAATACAAACCTTAAACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTCCAGAATGATGTAGCCTGCATAAATACAAACCTTAAACAACC  450

seq1  CCCACATATATAACTTATTTTAGCACATGGCAACACGCTCAAACTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATATATAACTTATTTTAGCACATGGCAACACGCTCAAACTATAAT  500

seq1  CAACTCCATTTATCTTGTTTACAAATGAAACAACCACCTATTGGACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATTTATCTTGTTTACAAATGAAACAACCACCTATTGGACAAAA  550

seq1  TTTTTAAAAATTAATCACAAAAAGATATTATATATAAGAAGTACAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATTAATCACAAAAAGATATTATATATAAGAAGTACAGAGTA  600

seq1  AATAACTCAGCAGTATGCTGAATGGTCTCCTATGGGAATCTAATAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCAGCAGTATGCTGAATGGTCTCCTATGGGAATCTAATAAATTT  650

seq1  TATTCAGTGAAAACCACAGGTGAAATTCTTACGAAATGAGCTAGCGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGAAAACCACAGGTGAAATTCTTACGAAATGAGCTAGCGAGTA  700

seq1  AGGGGTACACAACACGTAGATGACAAACCAAAGTTTCAGGAGAAAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTACACAACACGTAGATGACAAACCAAAGTTTCAGGAGAAAATTCA  750

seq1  TGTATACAACTGCTCCTAAAAGTCCCCTTTGCTGCCAATTAACTATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAACTGCTCCTAAAAGTCCCCTTTGCTGCCAATTAACTATTATT  800

seq1  TTAAAAATAGCTAAAAAATTAATCTTTCCTTTACCTGAATTCAGTAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAGCTAAAAAATTAATCTTTCCTTTACCTGAATTCAGTAAGTT  850

seq1  CTCTAAACAATCCTCTAAGCTAATGTTTTCATAGAGGCCATGACCACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACAATCCTCTAAGCTAATGTTTTCATAGAGGCCATGACCACAGA  900

seq1  ACCCCTGGGTCAGACTTAAACGTGTGAATACATAATTGAAACCATACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGGTCAGACTTAAACGTGTGAATACATAATTGAAACCATACAGT  950

seq1  TATCAGTTTTGTGAAACCTAAGACAAGTACTGTATGATTTTTCACTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATCAGTTTTGTGAAACCTAAGACAAGTACTGTATGATTTTTCACTTTCT  1000

seq1  ATCACAGTATAAGAATACAATGTTCTAAGAATAAAAATTGGCGTGTGTTA  1050
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCACAGTATAAGAATAC-ATGTTCTAAGAATAAAAATTGGCGTGTGTTA  1049

seq1  TGAAGATTAAGAACATCTGCATACCATTATCACCATTTAAAAGAAACTAT  1100
      |||||||  |||||||||||||| |||||| ||||||  |||| ||||||
seq2  TGAAGAT--AGAACATCTGCATATCATTATTACCATT--AAAG-AACTAT  1094

seq1  AAGGTCCACTGCCCAGGAAAAAAAAATCCTGGAGTAAAATGTTA  1144
      |||||||||||||||||||||||     ||||||| ||||||||
seq2  AAGGTCCACTGCCCAGGAAAAAA----TCTGGAGT-AAATGTTA  1133