BAC Information

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BAC

Clone NameB6Ng01-030O18
Chromosome5 (Build37)
Map Location 37,133,832 - 37,296,297
singlet/doubletdoublet
Overlap geneCno, Mrfap1, Man2b2, Ppp2r2c
Upstream geneAblim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825
Downstream geneWfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O18.bB6Ng01-030O18.g
ACCDH860683DH860684
length9491,063
definitionDH860683|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O18, 5' end.DH860684|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,133,832 - 37,134,788)(37,295,226 - 37,296,297)
sequence
gaattcctttcggccatggctagattcgcagttttcatgctttccctacc
cctatagcgccccctggtgagaagacgctgtcctgcaagccaaatggtcc
agagatgccttatttccatagccatcttttcatcttgtccccactcccta
accccaagctgggcttcactacacgggaaggatcccctctccctttggtc
ggtgaagggcctaaaataaatggtctcacatttattgatgggactgatgg
tttaagccactttggaaaaagttctctacagcctcttagcacatttaagg
tctcagaaaaggtgaattccacatgtagcctggccttatgtctggtgttc
ctacaaagcccatatggtttccctaggagtacatgtactgtgtttaacca
gtgtggtcttggatccatgatttggactaagttggtattcaacctcagct
gttagtctgccctgttcttgagctagaaagcacatatttttctctgtgtg
ttcttggcctgtgtgttttcctaagccaggaaatatatagcttgctcact
gggtatagcacttggtatagcttgctcactgggccagtctgactgctagt
cacttgacagacatctgaatgtccctagcacattgttactgctgagaatc
caggcaaagcaagcaggacccagggagcgtctttggtcatgcgtacaggc
gatgaggcagctagttggataataccacagccgctatttacacaggactg
ctggtttgcttccaggtcagatccaaaaagaagtaggaagttgttgcaaa
tttgtggggatgggggtgagccctatggaactgtctgcgcacaaagcaga
tttctggtttattccatttatgtccaatcactactgagagcattgggtaa
aggctggtgcatgggactcaggtgtttttttgaggggggtggtacatgt
gaattcacgggccaagagtggctcaaaaggcaagagtgctttttgaaagg
gccatagaagagcaaaacagaaaagtatgcaagagggattccagatctcc
gagtttcctggccctttacagtcagacacagagacagatcgcagctcagg
gcaagcctcagcctgcagctgggagagcagagtcaggtgtaaccgcagaa
gaactgcacagaaccaccctgtgcttcggcggtggggacagcaaggtcgg
tgtctcgacactacaggtggctctggactctcgctaagcttcttggatgg
gccaatccccaccactgcttgattagcagatactctgctccaacctctgt
ctctgtggccacacagccccttgtcgtccctgtcctctctgtcctcccct
cctttcctaagcccactgtagccgaattctaattagtgatatcaatagga
agccactgccaagaaagttccattctcaggccctggggacaggagtttgg
agaagattgcagtgctcatgctagtctgaacccctattttctccctcctc
tacagaattgtggtctcaggatgtggacacctctccccattctcttggct
ctttcctctccttccatccactactctctctcttctctctctctcccccc
tctgccccctctccaaatgacagatgggcaaagacttcccaaagacatgc
tgtgggactacctgcaggctggcctgcagccatgacagatgacttgtctc
ctgctaagtcccactgctgccaatgtctcttacaccaagccgtcccagag
gcgatgaaggtaggaataagatctctgctgtgtgtggcccaccagcatcc
ctgcctgctatggggccagcagatactgagctagcttgggttcaagaggg
actcagagcctgtgtgtaacttctgactccaagggacacaagcacttttt
ctaaggactcagtcttggcccctgccttaaggttcagacagatccctcct
agcctccccacctttcggcttctgtccgaactgcttaggtctataaggga
agcccggtctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37133832_37134788
seq2: B6Ng01-030O18.b_48_996

seq1  GAATTCCTTTCGGCCATGGCTAGATTCGCAGTTTTCATGCTTTCCCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCGGCCATGGCTAGATTCGCAGTTTTCATGCTTTCCCTACC  50

seq1  CCTATAGCGCCCCCTGGTGAGAAGACGCTGTCCTGCAAGCCAAATGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCGCCCCCTGGTGAGAAGACGCTGTCCTGCAAGCCAAATGGTCC  100

seq1  AGAGATGCCTTATTTCCATAGCCATCTTTTCATCTTGTCCCCACTCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCCTTATTTCCATAGCCATCTTTTCATCTTGTCCCCACTCCCTA  150

seq1  ACCCCAAGCTGGGCTTCACTACACGGGAAGGATCCCCTCTCCCTTTGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGCTGGGCTTCACTACACGGGAAGGATCCCCTCTCCCTTTGGTC  200

seq1  GGTGAAGGGCCTAAAATAAATGGTCTCACATTTATTGATGGGACTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGGCCTAAAATAAATGGTCTCACATTTATTGATGGGACTGATGG  250

seq1  TTTAAGCCACTTTGGAAAAAGTTCTCTACAGCCTCTTAGCACATTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCACTTTGGAAAAAGTTCTCTACAGCCTCTTAGCACATTTAAGG  300

seq1  TCTCAGAAAAGGTGAATTCCACATGTAGCCTGGCCTTATGTCTGGTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAAAGGTGAATTCCACATGTAGCCTGGCCTTATGTCTGGTGTTC  350

seq1  CTACAAAGCCCATATGGTTTCCCTAGGAGTACATGTACTGTGTTTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGCCCATATGGTTTCCCTAGGAGTACATGTACTGTGTTTAACCA  400

seq1  GTGTGGTCTTGGATCCATGATTTGGACTAAGTTGGTATTCAACCTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCTTGGATCCATGATTTGGACTAAGTTGGTATTCAACCTCAGCT  450

seq1  GTTAGTCTGCCCTGTTCTTGAGCTAGAAAGCACATATTTTTCTCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTGCCCTGTTCTTGAGCTAGAAAGCACATATTTTTCTCTGTGTG  500

seq1  TTCTTGGCCTGTGTGTTTTCCTAAGCCAGGAAATATATAGCTTGCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCCTGTGTGTTTTCCTAAGCCAGGAAATATATAGCTTGCTCACT  550

seq1  GGGTATAGCACTTGGTATAGCTTGCTCACTGGGCCAGTCTGACTGCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAGCACTTGGTATAGCTTGCTCACTGGGCCAGTCTGACTGCTAGT  600

seq1  CACTTGACAGACATCTGAATGTCCCTAGCACATTGTTACTGCTGAGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACAGACATCTGAATGTCCCTAGCACATTGTTACTGCTGAGAATC  650

seq1  CAGGCAAAGCAAGCAGGACCCAGGGAGCGTCTTTGGTCATGCGTACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGCAAGCAGGACCCAGGGAGCGTCTTTGGTCATGCGTACAGGC  700

seq1  GATGAGGCAGCTAGTTGGATAATACCACAGCCGCTA-TTACACAGGACTG  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGAGGCAGCTAGTTGGATAATACCACAGCCGCTATTTACACAGGACTG  750

seq1  CTGGTTTGCTTCCAGGTCAGGATCCAAAAAGAAGTAGGAAGGTTGTTGCA  799
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CTGGTTTGCTTCCAGGTCA-GATCCAAAAAGAAGTAGGAA-GTTGTTGCA  798

seq1  AATTTGTGGGGATGGGGGTGAGCCCTATGGGAACTGTCTGCGCACAAAGC  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATTTGTGGGGATGGGGGTGAGCCCTAT-GGAACTGTCTGCGCACAAAGC  847

seq1  AGATTTCTGGTTTTATTCCATTTATGTCCAAATCAACTACTGAGAGCATT  899
      |||||||||| |||||||||||||||||| |||| |||||||||||||||
seq2  AGATTTCTGG-TTTATTCCATTTATGTCC-AATC-ACTACTGAGAGCATT  894

seq1  GGGTAAAGGCTGGTGCATGGGACTCAAGGGTGTTTTTTTTTGGGGGGGTG  949
      ||||||||||||||||||||||||||  |||| |||||||  ||||||||
seq2  GGGTAAAGGCTGGTGCATGGGACTCA--GGTG-TTTTTTTGAGGGGGGTG  941

seq1  GTACATGT  957
      ||||||||
seq2  GTACATGT  949

seq1: chr5_37295226_37296297
seq2: B6Ng01-030O18.g_67_1129 (reverse)

seq1  TATAGCCGGTGCTTCCCTTTCTAGACCTAAGCAGATCAGACAGAGATGCC  50
      ||||| | | ||||||| || ||||||||||||| || |||  ||| |||
seq2  TATAGACCGGGCTTCCC-TTATAGACCTAAGCAGTTCGGAC--AGAAGCC  47

seq1  GACAGGTGGGGTAGCTAGGAGGGGATCTGTCTGGACCCTAAGGCAGGGG-  99
      || ||||||||  ||||||| |||||||||||| ||| ||||||||||| 
seq2  GAAAGGTGGGGAGGCTAGGA-GGGATCTGTCTGAACCTTAAGGCAGGGGC  96

seq1  CAAGACTGATGTCCTTTAGAAAAAGTGCTTGTGTCCCTTTGGAGTCAGAA  149
      ||||||||| |||| |||||||||||||||||||||| ||||||||||||
seq2  CAAGACTGA-GTCC-TTAGAAAAAGTGCTTGTGTCCC-TTGGAGTCAGAA  143

seq1  GTTACACACAGGCTCTGAGTCCCTTCTCTGAACCCTAAGCTAGCTCAGTA  199
      ||||||||||||||||||||||| ||| ||||||| ||||||||||||| 
seq2  GTTACACACAGGCTCTGAGTCCC-TCT-TGAACCC-AAGCTAGCTCAGT-  189

seq1  ATCTGCTGGCCCCATAGCAGGCAGGGATGCTGGTGGGCCACACACAGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGGCCCCATAGCAGGCAGGGATGCTGGTGGGCCACACACAGCAG  239

seq1  AGATCTTATTCCTACCTTCATCGCCTCTGGGACGGCTTGGTGTAAGGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGATCTTATTCCTACCTTCATCGCCTCTGGGACGGCTTGGTGTAA-GAGA  288

seq1  CATTGGCAGCAGTGGGACTTGGCAGGAGACAAGTCATCTGTCATGGCTGC  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTGGCAGCAGTGGGACTTAGCAGGAGACAAGTCATCTGTCATGGCTGC  338

seq1  AGGCCAGCCTGCAGGTAGTCCCACAGCATGTCCTTGGGAAGTC-TTGCCC  398
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  AGGCCAGCCTGCAGGTAGTCCCACAGCATGTCTTTGGGAAGTCTTTGCCC  388

seq1  ATCTGTCATTTGGAGAGGGGGCAGA-GGGGGAGAGAGAGAGAAGAGAGAG  447
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCTGTCATTTGGAGAGGGGGCAGAGGGGGGAGAGAGAGAGAAGAGAGAG  438

seq1  AGTAGTGGATGGAAGGAGAGGAAAGAGCCAAGAGAATGGGGAGAGGTGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGATGGAAGGAGAGGAAAGAGCCAAGAGAATGGGGAGAGGTGTC  488

seq1  CACATCCTGAGACCACAATTCTGTAGAGGAGGGAGAAAATAGGGGTTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTGAGACCACAATTCTGTAGAGGAGGGAGAAAATAGGGGTTCAG  538

seq1  ACTAGCATGAGCACTGCAATCTTCTCCAAACTCCTGTCCCCAGGGCCTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCATGAGCACTGCAATCTTCTCCAAACTCCTGTCCCCAGGGCCTGA  588

seq1  GAATGGAACTTTCTTGGCAGTGGCTTCCTATTGATATCACTAATTAGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAACTTTCTTGGCAGTGGCTTCCTATTGATATCACTAATTAGAAT  638

seq1  TCGGCTACAGTGGGCTTAGGAAAGGAGGGGAGGACAGAGAGGACAGGGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTACAGTGGGCTTAGGAAAGGAGGGGAGGACAGAGAGGACAGGGAC  688

seq1  GACAAGGGGCTGTGTGGCCACAGAGACAGAGGTTGGAGCAGAGTATCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGGCTGTGTGGCCACAGAGACAGAGGTTGGAGCAGAGTATCTGC  738

seq1  TAATCAAGCAGTGGTGGGGATTGGCCCATCCAAGAAGCTTAGCGAGAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGCAGTGGTGGGGATTGGCCCATCCAAGAAGCTTAGCGAGAGTC  788

seq1  CAGAGCCACCTGTAGTGTCGAGACACCGACCTTGCTGTCCCCACCGCCGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACCTGTAGTGTCGAGACACCGACCTTGCTGTCCCCACCGCCGA  838

seq1  AGCACAGGGTGGTTCTGTGCAGTTCTTCTGCGGTTACACCTGACTCTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGTGGTTCTGTGCAGTTCTTCTGCGGTTACACCTGACTCTGCT  888

seq1  CTCCCAGCTGCAGGCTGAGGCTTGCCCTGAGCTGCGATCTGTCTCTGTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTGCAGGCTGAGGCTTGCCCTGAGCTGCGATCTGTCTCTGTGT  938

seq1  CTGACTGTAAAGGGCCAGGAAACTCGGAGATCTGGAATCCCTCTTGCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTAAAGGGCCAGGAAACTCGGAGATCTGGAATCCCTCTTGCATA  988

seq1  CTTTTCTGTTTTGCTCTTCTATGGCCCTTTCAAAAAGCACTCTTGCCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTTTTGCTCTTCTATGGCCCTTTCAAAAAGCACTCTTGCCTTT  1038

seq1  TGAGCCACTCTTGGCCCGTGAATTC  1072
      |||||||||||||||||||||||||
seq2  TGAGCCACTCTTGGCCCGTGAATTC  1063