BAC Information

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BAC

Clone NameB6Ng01-031H08
Chromosome5 (Build37)Y (Build37)
Map Location 82,852,416 - 82,853,506573,321 - 573,530
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H08.bB6Ng01-031H08.g
ACCDH861068DH861069
length1,082481
definitionDH861068|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H08, 5' end.DH861069|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,852,416 - 82,853,506)(573,321 - 573,530)
sequence
gaattccatacatgaacactgaatttacacctctcctgcaccttcaaccc
gaacttgcttcatgcccctctcaattgtgtgatctcttctactctaatta
ccattgttttaaatacacatacacacacagggacacatgcacatacatgc
tcacaaatcaatgcagttcaaaccaactttgtacatgtgtcaagagatgg
acattttgtcttagaacgcctggtgttgcttattcctcgaggacactgta
tttccctgttgcaaacagtcattggctacctgtagatcttcatcttgcct
ggaaatttcttccatccaagtttgcattgtcattatactggtattattta
ggcaaccatattgttggggttagtgtatatattttccattctgagttgac
atatctgtaatacaacccatatatcaaaggctcaagaaaaatcatgcaac
atgacagaaaaactttaagagccagaagatcacagtaccaacaaagtctt
ccaaaaacgttaatagaatattgaagagaatattgaagcagtattgaata
tatgtaaaatgataggataatatgtgcaagattcctacagttgcttcctg
ttgaagcccagtacccttttttttaatggaagataatagtaaataagcag
aattgtatatgcaataaacgatttattacattatttttcttgctttcttt
tcattgctttgatgttgtgatgacttttactgattaacatttaaaataat
gtacagtcttaaaatagatttgtctccagacattttaattatctcaaata
tattaaccagtataagaggaacaatcttaattattggtgggacagtctct
ggaaaggtgatctgagactatataagatttgaagagaagatctagcacta
aaaacctggcaagcatcattcttatttctaagtgtgcgtgctgtagacca
cactcagattcaaatttttctcatctttttttttttttcctatcctgtac
cacactatgggcagatgctagtaggatataaaacagtgtggccagtttgg
ttcttctcttatttttccatcatgactatttt
attcctctctagaacagggaataaaatatccatggaaggagttgcagaga
caaagattggagctaagacaaaagtatgaaccatccaaagactgccccac
ctgggtgtccatcccataatcagccaccaaacgcagacactattgcatat
accagcaagattttgctgaatggaccctgatatagctttctcctgtgagg
ctttgccagtgcctggcaaacacagaagtggatgctcacagtcagctatt
ggatggaacaccgggctcccaatggaggagctagagaaagtaaccaagag
ctgaaggggtctgcaaccctataggtggaacaacaatatgaattaatcag
tactcccagagcttgtgtctctagctgcatatgtagcagtagatggccta
gtcagccatcattgggaagagaggccccttggtctagcaaactttatatg
ccccagtatagggcaacagcagggccaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82852416_82853506
seq2: B6Ng01-031H08.b_46_1127 (reverse)

seq1  AAAATAAGTCATGATGAGAAAATAAAGAGGAAAGAACCAAAACTG--CAC  48
      ||||| |||||||||| |||||  |||||  ||||||| ||||||  |||
seq2  AAAAT-AGTCATGATG-GAAAAATAAGAG--AAGAACC-AAACTGGCCAC  45

seq1  ACTGTTTTATATTCTACTAGCATCCTGCCCAATAGTGTGGTACAGGATAG  98
      |||||||||||| |||||||||| |||||| |||||||||||||||||||
seq2  ACTGTTTTATATCCTACTAGCAT-CTGCCC-ATAGTGTGGTACAGGATAG  93

seq1  GAAAAAAAAAAAAAAGATGAGAAAAATTTGAATCTTGAGTGTGGTTCTAC  148
      | |||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  G-AAAAAAAAAAAAAGATGAGAAAAATTTGAATC-TGAGTGTGG-TCTAC  140

seq1  AGCACGCACACTTAAGAAATAAGAATGATGCTTGCCAGGTTTTTAGTGCT  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCACGCACACTT-AGAAATAAGAATGATGCTTGCCAGGTTTTTAGTGCT  189

seq1  AGATCTTCTCTTCAAATCTTATATAGTCTCAGATCACCTTTCCAGAGACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCTCTTCAAATCTTATATAGTCTCAGATCACCTTTCCAGAGACT  239

seq1  GTCCCACCAATAATTAAGATTGTTCCTCTTATACTGGTTAATATATTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAATAATTAAGATTGTTCCTCTTATACTGGTTAATATATTTGA  289

seq1  GATAATTAAAATGTCTGGAGACAAATCTATTTTAAGACTGTACATTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAAAATGTCTGGAGACAAATCTATTTTAAGACTGTACATTATTT  339

seq1  TAAATGTTAATCAGTAAAAGTCATCACAACATCAAAGCAATGAAAAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTAATCAGTAAAAGTCATCACAACATCAAAGCAATGAAAAGAAA  389

seq1  GCAAGAAAAATAATGTAATAAATCGTTTATTGCATATACAATTCTGCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAAATAATGTAATAAATCGTTTATTGCATATACAATTCTGCTTA  439

seq1  TTTACTATTATCTTCCATTAAAAAAAAGGGTACTGGGCTTCAACAGGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATTATCTTCCATTAAAAAAAAGGGTACTGGGCTTCAACAGGAAG  489

seq1  CAACTGTAGGAATCTTGCACATATTATCCTATCATTTTACATATATTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAGGAATCTTGCACATATTATCCTATCATTTTACATATATTCAA  539

seq1  TACTGCTTCAATATTCTCTTCAATATTCTATTAACGTTTTTGGAAGACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTCAATATTCTCTTCAATATTCTATTAACGTTTTTGGAAGACTT  589

seq1  TGTTGGTACTGTGATCTTCTGGCTCTTAAAGTTTTTCTGTCATGTTGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTACTGTGATCTTCTGGCTCTTAAAGTTTTTCTGTCATGTTGCAT  639

seq1  GATTTTTCTTGAGCCTTTGATATATGGGTTGTATTACAGATATGTCAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCTTGAGCCTTTGATATATGGGTTGTATTACAGATATGTCAACT  689

seq1  CAGAATGGAAAATATATACACTAACCCCAACAATATGGTTGCCTAAATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGAAAATATATACACTAACCCCAACAATATGGTTGCCTAAATAA  739

seq1  TACCAGTATAATGACAATGCAAACTTGGATGGAAGAAATTTCCAGGCAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTATAATGACAATGCAAACTTGGATGGAAGAAATTTCCAGGCAAG  789

seq1  ATGAAGATCTACAGGTAGCCAATGACTGTTTGCAACAGGGAAATACAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATCTACAGGTAGCCAATGACTGTTTGCAACAGGGAAATACAGTG  839

seq1  TCCTCGAGGAATAAGCAACACCAGGCGTTCTAAGACAAAATGTCCATCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGAGGAATAAGCAACACCAGGCGTTCTAAGACAAAATGTCCATCTC  889

seq1  TTGACACATGTACAAAGTTGGTTTGAACTGCATTGATTTGTGAGCATGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACATGTACAAAGTTGGTTTGAACTGCATTGATTTGTGAGCATGTA  939

seq1  TGTGCATGTGTCCCTGTGTGTGTATGTGTATTTAAAACAATGGTAATTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGTCCCTGTGTGTGTATGTGTATTTAAAACAATGGTAATTAG  989

seq1  AGTAGAAGAGATCACACAATTGAGAGGGGCATGAAGCAAGTTCGGGTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGAGATCACACAATTGAGAGGGGCATGAAGCAAGTTCGGGTTGA  1039

seq1  AGGTGCAGGAGAGGTGTAAATTCAGTGTTCATGTATGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAGGAGAGGTGTAAATTCAGTGTTCATGTATGGAATTC  1082

seq1: chrY_573321_573530
seq2: B6Ng01-031H08.g_344_553

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||||||| |||| ||||| ||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTAACCAA-GAGCTGAAGGGGTCTGCAACCCT  49

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| ||||||||||||||||| ||| |||||  | |||||||  |||||
seq2  ATAGGTGGAACAACAATATGAATTAATCAGTACTCCCAGAGCTTGTGTCT  99

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| ||| ||||||||||||  ||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGTAGATGGCCTAGTCAGCCATCATTGGGAAGA  149

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||||||||||||||| |||||||||||||||||||||| |||| |||| |
seq2  GAGGCCCCTTGGTCTAGCAAACTTTATATGCCCCAGTATAGGGCAACAGC  199

seq1  AGGGCCAAGAA  210
      |||||||||||
seq2  AGGGCCAAGAA  210