BAC Information

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BAC

Clone NameB6Ng01-031N19
Chromosome5 (Build37)
Map Location 18,711,382 - 18,712,493
singlet/doubletsinglet
Overlap gene4921504A21Rik
Upstream geneGnai1, LOC100041818, LOC668167
Downstream geneMagi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031N19.bB6Ng01-031N19.g
ACCDH861358DH861359
length1,0871,110
definitionDH861358|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N19, 5' end.DH861359|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgatccacttggactttgtacaaggagataagaatggatcaa
ttcacattcttctacatgataacctccaggtgtgccagcaccatttgttg
aaaataatgtcgtttttccactggattgttttaggtcctttgtaaaagat
caagtgaccatggtatgtggattcatttctgggtcttcaattctattcca
ttgatctacctgtctgttgctgtaccagtaccatgcagtttttatcacaa
ttgctctgtagtacagctttagatcaggcatggtgattccaccagaggtt
cttttattgttgagaataatttttgctaccctaggttttttgttattcca
gatgaatttgcaaattgccctttctaaatctgtgaagaattgagttggaa
ttttgttggggattgcattcaatctgtagattcctttcagcaaggtagct
atttttactatattgatcctgccaatccatgagcatgggagatcattcca
tcttctgagatcttcaatttctttcttcagagacttgaagttcttaacgt
acagatctttcacttccttagttggagtcacaccctttattttttattat
ttgtgactattgtgaagtgtgttgtttccctaatttctttctcagcctgt
ttatcctttgtgtagagaaaggctacagatttgtttgagataatattata
tccagctactgcactaaagctgtttatcacgtttaggagttctctggtgg
aatttttagggtcacttatataatatcatatcatctgcaaatagtgatat
tttgatttcttcctttccaatttctgtcgccttgatctccttttgttttc
taattgtctgactaggacttcaagtattatattgaataggtaggtagaag
tagagccttgtctagtccctaatttagtgggatgcttcacgtttctctcc
atttactttgatgttggctaatgattgctgtatatgctttatttggttat
gattgggcctgaaattctgaacttccagaacttttccttaaaggggttgg
aatttgcacaaaagccttctctgcactctaagatgat
gaattcacaagaggacttgaaattcgatgtaaatttgtaatattggatta
tattagatatgaattagtataaggttttgcattcagaaaagtgtgcaatg
ttgacgtctgagaaccacttagccagaaagttagaacaggccttatactt
taaacctacccaacttcatcacattagtgtctgaattatctgtccatttt
tagttaaaaatgttaaacacattacatacagagaaactaagatttatatt
ttacccacaggtaagacataaataaaattagacctttgttgaccaggacc
attcatgattgttgacttggcattgagagggtaaaaagaattaccacaag
tttgaggccaacctggtctacaaagaagggtccagacaagtcaggaagat
cttgatataaaaataagtataatttttttatgagtgccaagaaatatttc
ttaacagatgactattttaagaccttagaaactaacctacaaaatactgg
gtttagatgtgaagcatagcagcaatctctactttcagcatgctagtaac
aaagacatttcatttggaactgacattggtaataccctgaaaaatatctt
tgagattttgcaaatcagtcctatgcatgaaaaagtaaatgttttccaaa
gaagattatcgttttaaatgaggtgtgtaaaaatgttttagtatgtaaaa
gttactataacgatctcattctcactaatataatccatgaaatgaagtat
gaagtctgttgcaggagctacccatgaaaaattaagttctcaagtataag
aaaaatgagtaagtattgacattcatcactgccatagaaatatagtcagc
caaattcactggttctaattaaacagcattctgtggtcaaggaatcttta
gacagctctatcagtttcatggactctactctccactttcctttcctttc
tggatagggtttctgctaagaatagaagagagttagcaaagccctcacgt
tggttctcattccaacagaaggaggcatgagctttatggaggccgaaaac
acaacctcatgggagtgggaatagttttttctgtcttaagcaaactcctt
tttgttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18711382_18712493
seq2: B6Ng01-031N19.g_69_1178 (reverse)

seq1  AAGGAACAAAAGAGGAGTTTGCTTAAGACAAGAAAAAATCATTCCCA-TC  49
      ||||||||||| ||||||||||||||||| ||||||||  ||||||| ||
seq2  AAGGAACAAAA-AGGAGTTTGCTTAAGAC-AGAAAAAACTATTCCCACTC  48

seq1  CCATTGAGTTTGT-TTCTCGGCCTCCATTAAAGCTCATGCCTCC-TCTGT  97
      ||| |||| |||| || |||||||||| |||||||||||||||| |||||
seq2  CCA-TGAGGTTGTGTTTTCGGCCTCCA-TAAAGCTCATGCCTCCTTCTGT  96

seq1  TGGAATGAGAACCAACGTGAGGGCTTTGCCTAAACTCTC-TCTATTCTTA  146
      |||||||||||||||||||||||||||||   ||||||| ||||||||||
seq2  TGGAATGAGAACCAACGTGAGGGCTTTGC--TAACTCTCTTCTATTCTTA  144

seq1  GCAGAAACCCTATCCAGAAAGGAAAGGAAAGTGGAGAGTAGAGTCCATGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACCCTATCCAGAAAGGAAAGGAAAGTGGAGAGTAGAGTCCATGA  194

seq1  AACTGATAGAGCTGTCTAAAGATTCCTTGACCACAGAATGCTGTTTAATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAGAGCTGTCTAAAGATTCCTTGACCACAGAATGCTGTTTAATT  244

seq1  AGAACCAGTGAATTTGGCTGACTATATTTCTATGGCAGTGATGAATGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGTGAATTTGGCTGACTATATTTCTATGGCAGTGATGAATGTCA  294

seq1  ATACTTACTCATTTTTCTTATACTTGAGAACTTAATTTTTCATGGGTAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACTCATTTTTCTTATACTTGAGAACTTAATTTTTCATGGGTAGC  344

seq1  TCCTGCAACAGACTTCATACTTCATTTCATGGATTATATTAGTGAGAATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAACAGACTTCATACTTCATTTCATGGATTATATTAGTGAGAATG  394

seq1  AGATCGTTATAGTAACTTTTACATACTAAAACATTTTTACACACCTCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTTATAGTAACTTTTACATACTAAAACATTTTTACACACCTCATT  444

seq1  TAAAACGATAATCTTCTTTGGAAAACATTTACTTTTTCATGCATAGGACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACGATAATCTTCTTTGGAAAACATTTACTTTTTCATGCATAGGACT  494

seq1  GATTTGCAAAATCTCAAAGATATTTTTCAGGGTATTACCAATGTCAGTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAAAATCTCAAAGATATTTTTCAGGGTATTACCAATGTCAGTTC  544

seq1  CAAATGAAATGTCTTTGTTACTAGCATGCTGAAAGTAGAGATTGCTGCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAATGTCTTTGTTACTAGCATGCTGAAAGTAGAGATTGCTGCTA  594

seq1  TGCTTCACATCTAAACCCAGTATTTTGTAGGTTAGTTTCTAAGGTCTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACATCTAAACCCAGTATTTTGTAGGTTAGTTTCTAAGGTCTTAA  644

seq1  AATAGTCATCTGTTAAGAAATATTTCTTGGCACTCATAAAAAAATTATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATCTGTTAAGAAATATTTCTTGGCACTCATAAAAAAATTATAC  694

seq1  TTATTTTTATATCAAGATCTTCCTGACTTGTCTGGACCCTTCTTTGTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATATCAAGATCTTCCTGACTTGTCTGGACCCTTCTTTGTAGA  744

seq1  CCAGGTTGGCCTCAAACTTGTGGTAATTCTTTTTACCCTCTCAATGCCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGCCTCAAACTTGTGGTAATTCTTTTTACCCTCTCAATGCCAA  794

seq1  GTCAACAATCATGAATGGTCCTGGTCAACAAAGGTCTAATTTTATTTATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAATCATGAATGGTCCTGGTCAACAAAGGTCTAATTTTATTTATG  844

seq1  TCTTACCTGTGGGTAAAATATAAATCTTAGTTTCTCTGTATGTAATGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGTGGGTAAAATATAAATCTTAGTTTCTCTGTATGTAATGTGT  894

seq1  TTAACATTTTTAACTAAAAATGGACAGATAATTCAGACACTAATGTGATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTTTAACTAAAAATGGACAGATAATTCAGACACTAATGTGATG  944

seq1  AAGTTGGGTAGGTTTAAAGTATAAGGCCTGTTCTAACTTTCTGGCTAAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGTAGGTTTAAAGTATAAGGCCTGTTCTAACTTTCTGGCTAAGT  994

seq1  GGTTCTCAGACGTCAACATTGCACACTTTTCTGAATGCAAAACCTTATAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGACGTCAACATTGCACACTTTTCTGAATGCAAAACCTTATAC  1044

seq1  TAATTCATATCTAATATAATCCAATATTACAAATTTACATCGAATTTCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATATCTAATATAATCCAATATTACAAATTTACATCGAATTTCAA  1094

seq1  GTCCTCTTGTGAATTC  1112
      ||||||||||||||||
seq2  GTCCTCTTGTGAATTC  1110