BAC Information

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BAC

Clone NameB6Ng01-032K06
Chromosome5 (Build37)
Map Location 136,868,057 - 136,983,792
singlet/doubletdoublet
Overlap geneCutl1
Upstream genePom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2
Downstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032K06.bB6Ng01-032K06.g
ACCDH861908DH861909
length1,1321,022
definitionDH861908|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K06, 5' end.DH861909|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,868,057 - 136,869,208)(136,982,761 - 136,983,792)
sequence
gaattcacattccccaacccttggttttccagggaagctgcttgagtgac
ccattctccttaggaaaactaagaaaactaagatcataacccactatcct
cctcattagctagcaatgcctgacttacctggaacatcaattagtctctt
gtacacagtcaagaaggctgcctctgcttctttgcttcttttactcagtg
catcaatctgaaagggaaggagacaaagaagagaaagaaagaaaacgtat
tgagagttcatttggttttttcgttttttgtcttctgagaaggtcttact
atatagccctatataacttactatataggtcttactatatagcccagagt
agcctagaactaactagtaatcctcctgcctcagcttcctacttcacata
tttgtttatgtcctagttgtggaacaaaagttaagatcctatagataagt
tatggacatggggaggcgctatcaggagggtttagggagagagtacagat
attacacacatgggacttactggcactggcactggctgggcggccacccc
gtacatggaggagagcatgtacctgctatataccacagtagaagacaccc
aggaggaggctgggagtggaagatgtttgaatctgacaatgtggaaggca
ctgggaagtggccagtggggaagcctggagcactctgagtcagtgtgagc
acacagctgggtgggtcagggacaatgctggggtttccagcaggcacagg
ggaaggtctgtgtctgtggtctgtcttatatgctgaccttctatcccaca
ggccatttctacacatcacaggaggaggaaaccccattaggctaacatcc
atccaaggagcatcatactgtcagaccacctcgttgtgctattaacctcc
cggcacacaactgccaagctaacagacggctctcactcctgagcgcagac
ttcacatgcactaagttcgtaccactcaggaaaggacccggaatacagtt
tcctgctggccttactcagatcactctcctctctgtgttttaagaggcca
aagatgggctttattataggctcagctgggcagcacagtctgttagctcg
agccgtatctgggaagagggtgatgtgttgaa
gaattcctctggaagagcagccagtgctcttaaccgctgagccatctccc
cagcccgaaatagctcatttctaacctgagcatttccattcactgctgca
tacagacctaccttggtgctttctggattatatttaactattatttactc
tttaattacttaacaaattgtccaggctaaccttgagccctttgtggagg
tggctcttagtcccccacttctcactctctgcgctcacatgagacctttt
tattcctgaggtgtggcttgacattgttcaggctgttgcttgcttcttat
ttttaactcttcttttgtcacttaagtaagatgtcttatttcttatttag
tgttagatcatttggcagaattttatttttgagaagagaatatgattatt
gtatggcattcaaacacttgcttctggtggaatctttcagaatcatatca
atgctgtgattttgttttcaaagatgttttatcactagatacacggacac
ggacaccaaaaatgttttctgtaatcattgtatatggtagttttgatccc
cccaccccccttttctggtactcaggattaaatttagggacttggaaaag
ccagacaagtgttctaccacagaactacacgccaagtctctaactggggc
atgctaagtattgtactgctgagttacaccttaggcctccatcactgcat
ttggaacgctagttcaaggaagcccgctgtttaaagtctggcactggatt
tgactctgcaataagaacacttgtcacaactgtaccaggtacaatgggag
ttgaaataactaagacagcccttactgtctgtctgtctatctgtctcatg
gctgtgtccatactagccccagcatatgctagtaatcacacaaaggtacc
agtagtgacattgcaagctaagatgattggtaaatagagagtctgcctgg
agacagccacactaggatccagattgaggtcatgggtaaatacaagttgg
gagcctcagtcagtccttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136868057_136869208
seq2: B6Ng01-032K06.b_41_1172

seq1  GAATTCACATTCCCCAACCCTTGGTTTTCCAGGGAAGCTGCTTGAGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCCCCAACCCTTGGTTTTCCAGGGAAGCTGCTTGAGTGAC  50

seq1  CCATTCTCCTTAGGAAAACTAAGAAAACTAAGATCATAACCCACTATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCTTAGGAAAACTAAGAAAACTAAGATCATAACCCACTATCCT  100

seq1  CCTCATTAGCTAGCAATGCCTGACTTACCTGGAACATCAATTAGTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTAGCTAGCAATGCCTGACTTACCTGGAACATCAATTAGTCTCTT  150

seq1  GTACACAGTCAAGAAGGCTGCCTCTGCTTCTTTGCTTCTTTTACTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGTCAAGAAGGCTGCCTCTGCTTCTTTGCTTCTTTTACTCAGTG  200

seq1  CATCAATCTGAAAGGGAAGGAGACAAAGAAGAGAAAGAAAGAAAACGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCTGAAAGGGAAGGAGACAAAGAAGAGAAAGAAAGAAAACGTAT  250

seq1  TGAGAGTTCATTTGGTTTTTTCGTTTTTTGTCTTCTGAGAAGGTCTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTCATTTGGTTTTTTCGTTTTTTGTCTTCTGAGAAGGTCTTACT  300

seq1  ATATAGCCCTATATAACTTACTATATAGGTCTTACTATATAGCCCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCCCTATATAACTTACTATATAGGTCTTACTATATAGCCCAGAGT  350

seq1  AGCCTAGAACTAACTAGTAATCCTCCTGCCTCAGCTTCCTACTTCACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAACTAACTAGTAATCCTCCTGCCTCAGCTTCCTACTTCACATA  400

seq1  TTTGTTTATGTCCTAGTTGTGGAACAAAAGTTAAGATCCTATAGATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATGTCCTAGTTGTGGAACAAAAGTTAAGATCCTATAGATAAGT  450

seq1  TATGGACATGGGGAGGCGCTATCAGGAGGGTTTAGGGAGAGAGTACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATGGGGAGGCGCTATCAGGAGGGTTTAGGGAGAGAGTACAGAT  500

seq1  ATTACACACATGGGACTTACTGGCACTGGCACTGGCTGGGCGGCCACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACACATGGGACTTACTGGCACTGGCACTGGCTGGGCGGCCACCCC  550

seq1  GTACATGGAGGAGAGCATGTACCTGCTATATACCACAGTAGAAGACACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGAGGAGAGCATGTACCTGCTATATACCACAGTAGAAGACACCC  600

seq1  AGGAGGAGGCTGGGAGTGGAAGATGTTTGAATCTGACAATGTGGAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGCTGGGAGTGGAAGATGTTTGAATCTGACAATGTGGAAGGCA  650

seq1  CTGGGAAGTGGCCAGTGGGGAAGCCTGGAGCACTCTGAGTCAGTGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGTGGCCAGTGGGGAAGCCTGGAGCACTCTGAGTCAGTGTGAGC  700

seq1  ACACAGCTGGGTGGGTCAGGGACAATGCTGGGGTTTCCAGCAGGCACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGGTGGGTCAGGGACAATGCTGGGGTTTCCAGCAGGCACAGG  750

seq1  GGAAGGTCTGTGTCTGTGGTCTGTCTTATATGCTGACCTTCTATCCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCTGTGTCTGTGGTCTGTCTTATATGCTGACCTTCTATCCCACA  800

seq1  GGCCATTTCTACACATCACAGGAGGAGGAAACCCCATTAGGCTAACATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTCTACACATCACAGGAGGAGGAAACCCCATTAGGCTAACATCC  850

seq1  ATCCAAGGAGCATCATACTGTCAGACCACCTCGTTGTGCTATTAACCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGAGCATCATACTGTCAGACCACCTCGTTGTGCTATTAACCTCC  900

seq1  CGGCACACAACTGCCAAGCTAACAGACGGCTCTCACTCCTGAGGCGGCAA  950
      |||||||||||||||||||||||||||||||||||||||||| |||   |
seq2  CGGCACACAACTGCCAAGCTAACAGACGGCTCTCACTCCTGA-GCG--CA  947

seq1  GACTTCACATGCACTAAGTTCGTACCACTCAGGAAAAGGACCCGGAATTA  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  GACTTCACATGCACTAAGTTCGTACCACTCAGG-AAAGGACCCGGAA-TA  995

seq1  CAGTTTCCTGCTGGCCTTACTCAAGATCACTCTCTCTC-CTGTGTTATTA  1049
      |||||||||||||||||||||| ||||||||||| ||| ||||||  || 
seq2  CAGTTTCCTGCTGGCCTTACTC-AGATCACTCTC-CTCTCTGTGT--TTT  1041

seq1  AAGAGGCAAAAGATGGGCCTTAATTATAGGGCCTCCAGCCTGGGCCAGGC  1099
      ||||||| ||||||||| ||| ||||||||  || ||| ||||| |||  
seq2  AAGAGGCCAAAGATGGG-CTTTATTATAGG--CT-CAG-CTGGG-CAG--  1083

seq1  AACAGTCTGTTAAGGGCT-GAGCGTAATCTGGGAAAGGAGGGTGAATTGT  1148
       |||||||||||   ||| ||||   |||||||||  ||||||||  |||
seq2  CACAGTCTGTTA---GCTCGAGCCGTATCTGGGAA--GAGGGTGATGTGT  1128

seq1  TGAA  1152
      ||||
seq2  TGAA  1132

seq1: chr5_136982761_136983792
seq2: B6Ng01-032K06.g_65_1086 (reverse)

seq1  AAATAAAGGACTGACTGAGGCTCCCAACTTTGTATTTTACCCCATGACCT  50
      |||| ||||||||||||||||||||||| ||||||||   ||||||||||
seq2  AAAT-AAGGACTGACTGAGGCTCCCAAC-TTGTATTT--ACCCATGACCT  46

seq1  CAATCTGGAATCCTAGTGTGGCTGTCTCCAGGCAGACCTCTCTATTTTAC  100
      |||||||| ||||||||||||||||||||||||||| ||||||| |||||
seq2  CAATCTGG-ATCCTAGTGTGGCTGTCTCCAGGCAGA-CTCTCTA-TTTAC  93

seq1  CAATCATCCTTAGCTTGCAATGTCACTACCTGGTACCTTTGTGTTGATTA  150
      ||||||| |||||||||||||||||||| |||||||||||||| ||||||
seq2  CAATCAT-CTTAGCTTGCAATGTCACTA-CTGGTACCTTTGTG-TGATTA  140

seq1  CTAGCATATGCTGGGGCTAGTATGGACACAGCCATGAGACAGATAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATATGCTGGGGCTAGTATGGACACAGCCATGAGACAGATAGACAG  190

seq1  ACAGACAGTAAGGGCTGTCTTAGTTATTTCAACTCCCATTGTACCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGTAAGGGCTGTCTTAGTTATTTCAACTCCCATTGTACCTGGTA  240

seq1  CAGTTGTGACAAGTGTTCTTATTGCAGAGTCAAATCCAGTGCCAGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGACAAGTGTTCTTATTGCAGAGTCAAATCCAGTGCCAGACTTT  290

seq1  AAACAGCGGGCTTCCTTGAACTAGCGTTCCAAATGCAGTGATGGAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCGGGCTTCCTTGAACTAGCGTTCCAAATGCAGTGATGGAGGCCT  340

seq1  AAGGTGTAACTCAGCAGTACAATACTTAGCATGCCCCAGTTAGAGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTAACTCAGCAGTACAATACTTAGCATGCCCCAGTTAGAGACTTG  390

seq1  GCGTGTAGTTCTGTGGTAGAACACTTGTCTGGCTTTTCCAAGTCCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGTTCTGTGGTAGAACACTTGTCTGGCTTTTCCAAGTCCCTAAA  440

seq1  TTTAATCCTGAGTACCAGAAAAGGGGGGTGGGGGGATCAAAACTACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTGAGTACCAGAAAAGGGGGGTGGGGGGATCAAAACTACCATA  490

seq1  TACAATGATTACAGAAAACATTTTTGGTGTCCGTGTCCGTGTATCTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGATTACAGAAAACATTTTTGGTGTCCGTGTCCGTGTATCTAGTG  540

seq1  ATAAAACATCTTTGAAAACAAAATCACAGCATTGATATGATTCTGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATCTTTGAAAACAAAATCACAGCATTGATATGATTCTGAAAGA  590

seq1  TTCCACCAGAAGCAAGTGTTTGAATGCCATACAATAATCATATTCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCAGAAGCAAGTGTTTGAATGCCATACAATAATCATATTCTCTTC  640

seq1  TCAAAAATAAAATTCTGCCAAATGATCTAACACTAAATAAGAAATAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAAAATTCTGCCAAATGATCTAACACTAAATAAGAAATAAGAC  690

seq1  ATCTTACTTAAGTGACAAAAGAAGAGTTAAAAATAAGAAGCAAGCAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTAAGTGACAAAAGAAGAGTTAAAAATAAGAAGCAAGCAACAG  740

seq1  CCTGAACAATGTCAAGCCACACCTCAGGAATAAAAAGGTCTCATGTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACAATGTCAAGCCACACCTCAGGAATAAAAAGGTCTCATGTGAGC  790

seq1  GCAGAGAGTGAGAAGTGGGGGACTAAGAGCCACCTCCACAAAGGGCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGTGAGAAGTGGGGGACTAAGAGCCACCTCCACAAAGGGCTCAA  840

seq1  GGTTAGCCTGGACAATTTGTTAAGTAATTAAAGAGTAAATAATAGTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCCTGGACAATTTGTTAAGTAATTAAAGAGTAAATAATAGTTAAA  890

seq1  TATAATCCAGAAAGCACCAAGGTAGGTCTGTATGCAGCAGTGAATGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCAGAAAGCACCAAGGTAGGTCTGTATGCAGCAGTGAATGGAAA  940

seq1  TGCTCAGGTTAGAAATGAGCTATTTCGGGCTGGGGAGATGGCTCAGCGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGGTTAGAAATGAGCTATTTCGGGCTGGGGAGATGGCTCAGCGGT  990

seq1  TAAGAGCACTGGCTGCTCTTCCAGAGGAATTC  1032
      ||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTGGCTGCTCTTCCAGAGGAATTC  1022