BAC Information

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BAC

Clone NameB6Ng01-032P03
Chromosome5 (Build37)
Map Location 40,400,339 - 40,565,116
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032P03.bB6Ng01-032P03.g
ACCDH862136DH862137
length1,191940
definitionDH862136|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P03, 5' end.DH862137|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,400,339 - 40,401,562)(40,564,180 - 40,565,116)
sequence
gaattcagatgtccttaaggaagaaggcttaatatccagaatatgtagct
tatcacttgctagtcagctgcaggatttgtttatgttataatacataata
gaaaaattgggagtgtttacaattgtatcattgtaaaggagattagagac
aatctttgcttgctttcctatttccatccaactttttggtatcattcttt
tcgtacagctatatcagagcagaagtttaccaagtcatttctctcctttc
caaacattgctcctggtagaagactaaggatgaaggaatgaataggccat
caaccatgcaaccatccagaagtctcaaatgggtataaacaatgccttgt
taaaagatccccaaagctaaaacttaaatcactatttgacatcactgaac
atatacttccatgggacctacttgagtttcataaatgacaaacttatata
ccaaaaccaaattatcaataatgagatagattttaattgaatttaaatct
tttgacaccatgatattattaaaagtacagaaagagacaaacttgtccaa
attgaaattcaaatacattaaatatctatccaatcatattttcataccaa
tacttcttatgcttgagtgttaaggttggagaaatctaaaacccttctaa
tatccataccatctcagcagggagggctaccacctttttggtagagaaat
tatccttgcagtttctgaagactgggtgttctttctcagaagtgatctgt
ttcttccttcttagaattagaccttaggattgctgttcacccacagcatt
tgtctgacgcttctcaccaacctaactgttcaaaggaatcaagaaagact
agatggtcatgccattgacagtgactccagagaactgaaagatagaaaaa
attactcttctttaaaatgttatctcaaggctggataaatctctcagcag
ttaagaacaaaacgttctgtccccagcacccacattgggtgactcattga
tgcctgtgatctgcaatccagctatctgtcaccatctctgcctctgtaag
cagctactctcgtatccatacacatgtagccagaccttacaattttaaaa
catcttagaagttcagtagcttatattctgaccacccttgcaagctggat
ctgctaagacaatagttatctgtctggccatctgttgatgt
gaattctgaatgatatttattacacgtgttgacagacaggagcccatgtc
ctctttcactccgagctttaattatctgctttagtccatatctagtacac
tgtagtaggagatgcctgttcctgcaggcttatgactatgcctgactgat
gtgggtcagtatgtgtgttcagggccagaaggagaaatagtttccatttg
cctttctgattcagcagttgctatattttgtgtaagtaaagaaaagggtt
ctgcttgtcactcactgagagaccctggtattgatgtctatgaattccat
attttgccggtatttacatttatgaagtctttttctaccatgtttcccaa
tttttttttctccttctgggtaatctgttatgccagtgtattttcctttg
aaacctgaagtatccagaggttgtttaagcttaccttttggcttctactc
tgattggagaattgcatacgttacaaggtattttggctctggaggcacag
aacacagtcgtgctagagttggtacttctgggacaatggatatatcaagg
aagagaggaatctggtagaagatgaataagagatgaaagaataccaatgg
atctatatttcttattcaaataaatagcattacacaaatgaagtatttaa
ttagataatggtcttgccatgtttatgtagatgcataagtaactaaaatt
gaatggaggcggtgtggtggcatttttggtcaggtaaaagacaaaaggtg
ttttagaccaggaggccagctgaagtaaatgcagaaagagaccagagaat
attagacaaaatttattttatgcccttggatctgctcttcactcttccct
ttgctgacaccttccatccatctttgaggtttggagagctgggtagttta
tcagttctctctctctctctctctctctctctctttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40400339_40401562
seq2: B6Ng01-032P03.b_44_1234

seq1  GAATTCAGATGTCCTTAAGGAAGAAGGCTTAATATCCAGAATATGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTCCTTAAGGAAGAAGGCTTAATATCCAGAATATGTAGCT  50

seq1  TATCACTTGCTAGTCAGCTGCAGGATTTGTTTATGTTATAATACATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTGCTAGTCAGCTGCAGGATTTGTTTATGTTATAATACATAATA  100

seq1  GAAAAATTGGGAGTGTTTACAATTGTATCATTGTAAAGGAGATTAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGGGAGTGTTTACAATTGTATCATTGTAAAGGAGATTAGAGAC  150

seq1  AATCTTTGCTTGCTTTCCTATTTCCATCCAACTTTTTGGTATCATTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGCTTGCTTTCCTATTTCCATCCAACTTTTTGGTATCATTCTTT  200

seq1  TCGTACAGCTATATCAGAGCAGAAGTTTACCAAGTCATTTCTCTCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACAGCTATATCAGAGCAGAAGTTTACCAAGTCATTTCTCTCCTTTC  250

seq1  CAAACATTGCTCCTGGTAGAAGACTAAGGATGAAGGAATGAATAGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGCTCCTGGTAGAAGACTAAGGATGAAGGAATGAATAGGCCAT  300

seq1  CAACCATGCAACCATCCAGAAGTCTCAAATGGGTATAAACAATGCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGCAACCATCCAGAAGTCTCAAATGGGTATAAACAATGCCTTGT  350

seq1  TAAAAGATCCCCAAAGCTAAAACTTAAATCACTATTTGACATCACTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATCCCCAAAGCTAAAACTTAAATCACTATTTGACATCACTGAAC  400

seq1  ATATACTTCCATGGGACCTACTTGAGTTTCATAAATGACAAACTTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTCCATGGGACCTACTTGAGTTTCATAAATGACAAACTTATATA  450

seq1  CCAAAACCAAATTATCAATAATGAGATAGATTTTAATTGAATTTAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCAAATTATCAATAATGAGATAGATTTTAATTGAATTTAAATCT  500

seq1  TTTGACACCATGATATTATTAAAAGTACAGAAAGAGACAAACTTGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACCATGATATTATTAAAAGTACAGAAAGAGACAAACTTGTCCAA  550

seq1  ATTGAAATTCAAATACATTAAATATCTATCCAATCATATTTTCATACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATTCAAATACATTAAATATCTATCCAATCATATTTTCATACCAA  600

seq1  TACTTCTTATGCTTGAGTGTTAAGGTTGGAGAAATCTAAAACCCTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTATGCTTGAGTGTTAAGGTTGGAGAAATCTAAAACCCTTCTAA  650

seq1  TATCCATACCATCTCAGCAGGGAGGGCTACCACCTTTTTGGTAGAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATACCATCTCAGCAGGGAGGGCTACCACCTTTTTGGTAGAGAAAT  700

seq1  TATCCTTGCAGTTTCTGAAGACTGGGTGTTCTTTCTCAGAAGTGATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGCAGTTTCTGAAGACTGGGTGTTCTTTCTCAGAAGTGATCTGT  750

seq1  TTCTTCCTTCTTAGAATTAGACCTTAGGATTGCTGTTCACCCACAGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTCTTAGAATTAGACCTTAGGATTGCTGTTCACCCACAGCATT  800

seq1  TGTCTGACGCTTCTCACCAACCTAACTGTTCAAAGGAATCAAGAAAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACGCTTCTCACCAACCTAACTGTTCAAAGGAATCAAGAAAGACT  850

seq1  AGATGGTCATGCCATTGACAGTGACTCCAGAGAACTGAAAGATAGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGATGGTCATGCCATTGACAGTGACTCCAGAGAACTGAAAGATAG-AAAA  899

seq1  AATTACTCTTCTTTAAAATGTTATCTCAAGGCTGGATAAATCTCTCAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCTTCTTTAAAATGTTATCTCAAGGCTGGATAAATCTCTCAGCA  949

seq1  GTTAAGAACAAAACGTTCTGTCCCCAGCACCCACATTGGGTGACTCATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAACAAAACGTTCTGTCCCCAGCACCCACATTGGGTGACTCATTG  999

seq1  ATGCCTGTGATCTGCAATCCAGCTATCTGTCACCATCTTCTGCCCTCTGT  1050
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ATGCCTGTGATCTGCAATCCAGCTATCTGTCACCATC-TCTG-CCTCTGT  1047

seq1  AAGCAGCTACTCTCGTATTCCCATACACATGTAAGCAAAGACACTTACAA  1100
      ||||||||||||||||||  |||||||||||||  |  |||| |||||||
seq2  AAGCAGCTACTCTCGTAT--CCATACACATGTAGCC--AGAC-CTTACAA  1092

seq1  ATTTTTTAAAACCAATCTTTAAGAAAAATTTCAGTAGCTATTATTTCTGA  1150
         |||||||||  |||||     | || ||||||||||  || ||||||
seq2  ---TTTTAAAAC--ATCTT-----AGAAGTTCAGTAGCTTATA-TTCTGA  1131

seq1  CACAACTCTTTGCAGAAGCTTGGTATTCTGCTAAAAGACAATAGTTATCT  1200
      | ||   | ||||  ||||| |    ||||||  ||||||||||||||| 
seq2  C-CA--CCCTTGC--AAGCTGG---ATCTGCT--AAGACAATAGTTATC-  1170

seq1  TGTCTGGGGCTATTCTGTTGATGT  1224
      |||||  ||| | |||||||||||
seq2  TGTCT--GGCCA-TCTGTTGATGT  1191

seq1: chr5_40564180_40565116
seq2: B6Ng01-032P03.g_68_1007 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGATAAAACTA-C  49
      ||||| ||||||||||||||||||||||||||||||||||| |||||| |
seq2  AGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTGAT-AAACTACC  49

seq1  CAGCTCTCCAAACCTCAAAGATGGATGGAAGGTGTCAGCAAAGGGAAGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCAAACCTCAAAGATGGATGGAAGGTGTCAGCAAAGGGAAGAG  99

seq1  TGAAGAGCAGATCCAAGGGCAT-AAATAAATTTTGTCTAATATTCTCTGG  148
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAAGAGCAGATCCAAGGGCATAAAATAAATTTTGTCTAATATTCTCTGG  149

seq1  TCTCTTTCTGCATTTACTTCAGCTGGCCTCCTGGTCTAAAACACC-TTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCTTTCTGCATTTACTTCAGCTGGCCTCCTGGTCTAAAACACCTTTTG  199

seq1  TCTTTTACCTGACCAAAAATGCCACCACACCGCCTCCATTCAA-TTTAGT  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTTTACCTGACCAAAAATGCCACCACACCGCCTCCATTCAATTTTAGT  249

seq1  TACTTATGCATCTACATAAACATGGCAAGACCATTATCTAATTAAATACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGCATCTACATAAACATGGCAAGACCATTATCTAATTAAATACT  299

seq1  TCATTTGTGTAATGCTATTTATTTGAATAAGAAATATAGATCCATTGGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTGTAATGCTATTTATTTGAATAAGAAATATAGATCCATTGGTA  349

seq1  TTCTTTCATCTCTTATTCATCTTCTACCAGATTCCTCTCTTCCTTGATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCTCTTATTCATCTTCTACCAGATTCCTCTCTTCCTTGATAT  399

seq1  ATCCATTGTCCCAGAAGTACCAACTCTAGCACGACTGTGTTCTGTGCCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGTCCCAGAAGTACCAACTCTAGCACGACTGTGTTCTGTGCCTC  449

seq1  CAGAGCCAAAATACCTTGTAACGTATGCAATTCTCCAATCAGAGTAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAAAATACCTTGTAACGTATGCAATTCTCCAATCAGAGTAGAAG  499

seq1  CCAAAAGGTAAGCTTAAACAACCTCTGGATACTTCAGGTTTCAAAGGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTAAGCTTAAACAACCTCTGGATACTTCAGGTTTCAAAGGAAA  549

seq1  ATACACTGGCATAACAGATTACCCAGAAGGAGAAAAAAAAATTGGGAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGGCATAACAGATTACCCAGAAGGAGAAAAAAAAATTGGGAAAC  599

seq1  ATGGTAGAAAAAGACTTCATAAATGTAAATACCGGCAAAATATGGAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAAAAAGACTTCATAAATGTAAATACCGGCAAAATATGGAATTC  649

seq1  ATAGACATCAATACCAGGGTCTCTCAGTGAGTGACAAGCAGAACCCTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATCAATACCAGGGTCTCTCAGTGAGTGACAAGCAGAACCCTTTT  699

seq1  CTTTACTTACACAAAATATAGCAACTGCTGAATCAGAAAGGCAAATGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTACACAAAATATAGCAACTGCTGAATCAGAAAGGCAAATGGAA  749

seq1  ACTATTTCTCCTTCTGGCCCTGAACACACATACTGACCCACATCAGTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCTCCTTCTGGCCCTGAACACACATACTGACCCACATCAGTCAG  799

seq1  GCATAGTCATAAGCCTGCAGGAACAGGCATCTCCTACTACAGTGTACTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCATAAGCCTGCAGGAACAGGCATCTCCTACTACAGTGTACTAG  849

seq1  ATATGGACTAAAGCAGATAATTAAAGCTCGGAGTGAAAGAGGACATGGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGACTAAAGCAGATAATTAAAGCTCGGAGTGAAAGAGGACATGGGC  899

seq1  TCCTGTCTGTCAACACGTGTAATAAATATCATTCAGAATTC  937
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGTCAACACGTGTAATAAATATCATTCAGAATTC  940