BAC Information

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BAC

Clone NameB6Ng01-033L16
Chromosome5 (Build37)
Map Location 124,458,960 - 124,598,195
singlet/doubletdoublet
Overlap geneVps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2
Upstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r
Downstream geneMphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L16.bB6Ng01-033L16.g
ACCDH862698DH862699
length927484
definitionDH862698|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L16, 5' end.DH862699|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,597,267 - 124,598,195)(124,458,960 - 124,459,449)
sequence
gaattcctggggactatgaggagtagaccctgatgattattggttcattt
ggtcagcctttctctatctggtccatggagataccctagtgctctatggg
tttgccgcatagatcccagcccttaaggcccgcaagtctccatatccatc
tcactgagtggctgcaacgatccatagcccacacctggcgatgtcagcag
cgtgggtgccctgtgcctgaagtacaacaccagctttagcccctgccatg
acctgcctgcaaagctggaactgttcctcctcctcacacacaaggcagct
cagagatgtcagagagcttgttcagagctgaccgtaggaagccaggcttg
ctctggagatgcgaatggctgcctttctgcccttggagcatttggggatc
tccatgtctgccacatctcttccttctttgaagtcatggttttagggatt
ggagcaggatgcctgtcacctccttgtcccatacatagcccccctccccc
cagaactccaatgctcatataacttgagggaagactgtagatggtaatcc
acccatagggtcaccactggggaaagaaaggcccgtgtggttgtgcagga
gacacaaggaccactccaggaggcaagagagttcacctttgggcagggga
gggaccaacacttagtgctgttttctctgactgacaggctgaaggctaac
cacgggaggtcttgaagataaccacatagccggttggccagtgcccccaa
ttcatattcacatacagcttcaagagtgcgacctcatctagactccagtg
tgtacatatggaatttacacttcagagtttatactcctgagatttagggc
ctgccccatttgactaactatggtccctgtaagaagccaggcgtggggcg
aagcctttaatccatcactcgggagga
actctgtagaccaggctggcctagaaatcagagatctccaggctgccttg
tgagtgctgggattaaaggtgtgtgccaccacccgaggtgttttaatctg
tgtctttctgcgagtatgtgctggttccagcaggagacaccagatccagc
cagctgtgggctgcctgtgtgggagctgaaaacagtccttggggcctcta
gaggaatagcaggcactcaacccgagccatctctccagttcagacagtgt
gtccttttttggttgtttcttcagaaggggtcgttcttgtagccctggtt
ggcctccaactcacaaagatctacctgcctctgcctcccaagcgctgaac
gacaacacagccgactcccacaagttttctttttcccctttgtttcgtct
taagaaatagttttatttgccaggcagtggtggcatatacctttaatccc
agcactcgggaggcagagactggcggatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124597267_124598195
seq2: B6Ng01-033L16.b_45_970 (reverse)

seq1  CCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAACGCCTGGCTTCTT  50
      ||||||||||| | ||||||||||| | |||  || ||||||||||||||
seq2  CCTCCCGAGTGAT-GGATTAAAGGC-TTCGC--CCCACGCCTGGCTTCTT  46

seq1  ACAGGGACCATAGTTAGTCAACTGGGGCAGGCCCTAAATCTCAGGAGTAT  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGGGACCATAGTTAGTCAAATGGGGCAGGCCCTAAATCTCAGGAGTAT  96

seq1  AAACTCTGAAGTGTAAATTCCATATGTACACACTGGAGTCTAGATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGAAGTGTAAATTCCATATGTACACACTGGAGTCTAGATGAGGT  146

seq1  CGCACTCTTGAAGCTGTATGTGAATATGAATTGGGGGCACTGGCCAACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTCTTGAAGCTGTATGTGAATATGAATTGGGGGCACTGGCCAACCG  196

seq1  GCTATGTGGTTATCTTCAAGACCTCCCGTGGTTAGCCTTCAGCCTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGGTTATCTTCAAGACCTCCCGTGGTTAGCCTTCAGCCTGTCAG  246

seq1  TCAGAG-AAACAGCACTAAGTGTTGGTCCCTCCCCTGCCCAAAGGTGAAC  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAACAGCACTAAGTGTTGGTCCCTCCCCTGCCCAAAGGTGAAC  296

seq1  TCTCTTGCCTCCTGGAGTGGTCCTTGTGTCTCCTGCACAACCACACGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCCTCCTGGAGTGGTCCTTGTGTCTCCTGCACAACCACACGGGC  346

seq1  CTTTCTTTCCCCAGTGGTGACCCTATGGGTGGATTACCATCTACAGTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCCCCAGTGGTGACCCTATGGGTGGATTACCATCTACAGTCTT  396

seq1  CCCTCAAGTTATATGAGCATTGGAGTTCTGGGGGGAGGGGGGCTATGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGTTATATGAGCATTGGAGTTCTGGGGGGAGGGGGGCTATGTAT  446

seq1  GGGACAAGGAGGTGACAGGCATCCTGCTCCAATCCCTAAAACCATGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGGAGGTGACAGGCATCCTGCTCCAATCCCTAAAACCATGACTT  496

seq1  CAAAGAAGGAAGAGATGTGGCAGACATGGAGATCCCCAAATGCTCCAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGAAGAGATGTGGCAGACATGGAGATCCCCAAATGCTCCAAGG  546

seq1  GCAGAAAGGCAGCCATTCGCATCTCCAGAGCAAGCCTGGCTTCCTACGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGCAGCCATTCGCATCTCCAGAGCAAGCCTGGCTTCCTACGGT  596

seq1  CAGCTCTGAACAAGCTCTCTGACATCTCTGAGCTGCCTTGTGTGTGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAACAAGCTCTCTGACATCTCTGAGCTGCCTTGTGTGTGAGGA  646

seq1  GGAGGAACAGTTCCAGCTTTGCAGGCAGGTCATGGCAGGGGCTAAAGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACAGTTCCAGCTTTGCAGGCAGGTCATGGCAGGGGCTAAAGCTG  696

seq1  GTGTTGTACTTCAGGCACAGGGCACCCACGCTGCTGACATCGCCAGGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTACTTCAGGCACAGGGCACCCACGCTGCTGACATCGCCAGGTGT  746

seq1  GGGCTATGGATCGTTGCAGCCACTCAGTGAGATGGATATGGAGACTTGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATGGATCGTTGCAGCCACTCAGTGAGATGGATATGGAGACTTGCG  796

seq1  GGCCTTAAGGGCTGGGATCTATGCGGCAAACCCATAGAGCACTAGGGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAGGGCTGGGATCTATGCGGCAAACCCATAGAGCACTAGGGTAT  846

seq1  CTCCATGGACCAGATAGAGAAAGGCTGACCAAATGAACCAATAATCATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGACCAGATAGAGAAAGGCTGACCAAATGAACCAATAATCATCA  896

seq1  GGGTCTACTCCTCATAGTCCCCAGGAATTC  929
      ||||||||||||||||||||||||||||||
seq2  GGGTCTACTCCTCATAGTCCCCAGGAATTC  926

seq1: chr5_124458960_124459449
seq2: B6Ng01-033L16.g_67_556

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTAGAAATCAGAGATCTCCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTAGAAATCAGAGATCTCCAGGCT  50

seq1  GCCTTGTGAGTGCTGGGATTAAAGGTGTGTGCCACCACCCGAGGTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGAGTGCTGGGATTAAAGGTGTGTGCCACCACCCGAGGTGTTTT  100

seq1  AATCTGTGTCTTTCTGCGAGTATGTGCTGGTTCCAGCAGGAGACACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGTCTTTCTGCGAGTATGTGCTGGTTCCAGCAGGAGACACCAGA  150

seq1  TCCAGCCAGCTGTGGGCTGCCTGTGTGGGAGCTGAAAACAGTCCTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCAGCTGTGGGCTGCCTGTGTGGGAGCTGAAAACAGTCCTTGGGG  200

seq1  CCTCTAGAGGAATAGCAGGCACTCAACCCGAGCCATCTCTCCAGTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAGGAATAGCAGGCACTCAACCCGAGCCATCTCTCCAGTTCAGA  250

seq1  CAGTGTGTCCTTTTTTGGTTGTTTCTTCAGAAGGGGTCGTTCTTGTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTCCTTTTTTGGTTGTTTCTTCAGAAGGGGTCGTTCTTGTAGCC  300

seq1  CTGGTTGGCCTCCAACTCACAAAGATCTACCTGCCTCTGCCTCCCAAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGCCTCCAACTCACAAAGATCTACCTGCCTCTGCCTCCCAAGCG  350

seq1  CTGAACGACAACACAGCCGACTCCCACAAGTTTTCTTTTTCCCCTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGACAACACAGCCGACTCCCACAAGTTTTCTTTTTCCCCTTTGTT  400

seq1  TCGTCTTAAGAAATAGTTTTATTTGCCAGGCAGTGGTGGCATATACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTAAGAAATAGTTTTATTTGCCAGGCAGTGGTGGCATATACCTTT  450

seq1  AATCCCAGCACTCGGGAGGCAGAGACAGGCGGATTTCTGA  490
      |||||||||||||||||||||||||| |||||||||||||
seq2  AATCCCAGCACTCGGGAGGCAGAGACTGGCGGATTTCTGA  490