BAC Information

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BAC

Clone NameB6Ng01-034B05
Chromosome12 (Build37)5 (Build37)
Map Location 64,664,852 - 64,665,33610,637,683 - 10,638,631
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302, EG623046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B05.bB6Ng01-034B05.g
ACCDH862942DH862943
length916985
definitionDH862942|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B05, 5' end.DH862943|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,664,852 - 64,665,336)(10,637,683 - 10,638,631)
sequence
gaattccttacagatcttttttttaaattttttttaattaggtattttcc
tcgtttacattttcagtgctatcccaaaggtcccccatatccaccccacc
ccccaatcccctacccacccacttccacttcttggccctggccttcccct
gtactggggcatataaagttggcaagtccaatgggcctctctttgcagcg
atggccgactaggccatcttttgatacatatgcagctagagacaagagct
ccggggtactggttagttcatattgttgttccacctatagggttgcagtt
ccctttagctccttgggtaatatctctagctcctgcattgggagccctgt
gatccatccaatagctgactgtgatcatccacttctgtgtttgctaggcc
ccatcatagcctcacaagagagagctatatctgggtcctttcagcaaaat
tttgctagtgtgtgcaatggtgtcagcgtttggaagctgattatgggatg
gatccctgcatatggcaataactagatggaccatctttttgtcacagctc
caaattttgtctctgtaactccttccatgggtgttttgttcccatttcta
ggaaggggtaaagtgtccacactttggtcttccttcttcttgaatttcat
gcgtttagcaagttgtatcttatatcttgggtatcctaagtttctgggct
aatatccacttatcagtgagtacatattgtgtgagttcctttgtgattgg
gttacctcactcaggatgatgccctccaagtccatccatttgcctagaaa
tttcataaattcatttttaaatagctgagtagtattccatgtgtaaatgt
accacatttctgtatccatttctctgtgaggcatctgggttctttcagct
ctgctatataatagct
gaattccattgatgtgaagaccataatacttttaacatttacaacattaa
ctaaccagtaacaatatattgtacacatatttattttgtcatttcattct
ttatctggttcagtgttcctgtaaaaatggctttagttttggaaatgcat
tttgttttcccctttgtcgtcaggagggagcaagttatataaagctgttt
ggaaataaggattcttcttggtttaagatagggaatttcattccaatgga
aagtatctaacagtaaaattcattgaatacacttagcatactaaacaagg
ctgcacactggacctgtcatgtttgcttaacagcaaagtacatggatgag
tggcgtctgtagcttattctcaaaaaccagtaatcaggcgattaaaatat
cttaatttagggcaggctatatctaaatatattgagctatggtttttaat
tttacagttggaaaacatttttctcaaaattagttgaattaaaaacaatt
tattcagaaaaattagtagctcttctatatccaaatgacattctgggaaa
gaaatcagggaaacaaaaattttgactgtagcctcaaataatgcaaatat
cctgggtaactgtaaccttagaagtagaagactcatataataaaaacttc
cagaatttgaagaaacaaactggagaagatttcagaagatataaagatcg
tctatgttcatggatatgtaggatcaacatagtaaaaatgggtattttac
taaaagcaatctagatattgggtgtaactccattaaaacgacaacacaat
tcttcacagatcttgaaagaacaattctcagcttgatctgtaaaatgcaa
actccaaagataactaaaatatacttcataataaaagaactgctagaggt
atcaccacttccaataccaagttttccacagagatgtagtaataaaaagt
agtgttggtcacataaaacagacactgataatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_64664852_64665336
seq2: B6Ng01-034B05.b_73_562 (reverse)

seq1  TGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCAGACACCA  50
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  TGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCA  50

seq1  TTGCATACACTAGCAAGATTTCGCTGAAAGGACCCAGTTATAGCTCTCTC  100
      ||||| |||||||||| |||| ||||||||||||||| ||||||||||||
seq2  TTGCACACACTAGCAAAATTTTGCTGAAAGGACCCAGATATAGCTCTCTC  100

seq1  TTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGT  150
      ||||||| |||||  |||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTATGATGGGGCCTAGCAAACACAGAAGTGGATGATCACAGT  150

seq1  CAGCTATTGGATGGGTCACACGGCCCCTAATGGAGGAGCTAGAGAAATTA  200
      |||||||||||||| ||||| ||| || |||| |||||||||||| ||||
seq2  CAGCTATTGGATGGATCACAGGGCTCCCAATGCAGGAGCTAGAGATATTA  200

seq1  CCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACATTATGA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGA  250

seq1  ACTAACCAGTACCTGGGAGCTCTTGTCTTTAGCTGCATATGTATCAAAAG  300
      |||||||||||||  ||||||||||||| |||||||||||||||||||||
seq2  ACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAG  300

seq1  ATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAAC  350
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  ATGGCCTAGTCGGCCATCGCTGCAAAGAGAGGCCCATTGGACTTGCCAAC  350

seq1  TTTATATGCCCCAGTACCGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGG  400
      ||||||||||||||||| |||||| ||||||||||| ||| || ||||||
seq2  TTTATATGCCCCAGTACAGGGGAAGGCCAGGGCCAAGAAGTGGAAGTGGG  400

seq1  TGGGTAGGGGATTGAGGGGTGGG-----TGTGGGGGACCTTTTGGATAGC  445
      |||||||||||||| ||||||||     | |||||||||||| |||||||
seq2  TGGGTAGGGGATTGGGGGGTGGGGTGGATATGGGGGACCTTTGGGATAGC  450

seq1  ATTGAAAATGTAAATGAGGAAAATACCTAATTAAAAAAAA  485
      | |||||||||||| |||||||||||||||||||||||||
seq2  ACTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAA  490

seq1: chr5_10637683_10638631
seq2: B6Ng01-034B05.g_69_1015

seq1  GAATTCCATTGATGTGAAGACCATAATACTTTTAACATTTACAACATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGATGTGAAGACCATAATACTTTTAACATTTACAACATTAA  50

seq1  CTAACCAGTAACAATATATTGTACACATATTTATTTTGTCATTTCATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTAACAATATATTGTACACATATTTATTTTGTCATTTCATTCT  100

seq1  TTATCTGGTTCAGTGTTCCTGTAAAAATGGCTTTAGTTTTGGAAATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGTTCAGTGTTCCTGTAAAAATGGCTTTAGTTTTGGAAATGCAT  150

seq1  TTTGTTTTCCCCTTTGTCGTCAGGAGGGAGCAAGTTATATAAAGCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCCCCTTTGTCGTCAGGAGGGAGCAAGTTATATAAAGCTGTTT  200

seq1  GGAAATAAGGATTCTTCTTGGTTTAAGATAGGGAATTTCATTCCAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAGGATTCTTCTTGGTTTAAGATAGGGAATTTCATTCCAATGGA  250

seq1  AAGTATCTAACAGTAAAATTCATTGAATACACTTAGCATACTAAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTAACAGTAAAATTCATTGAATACACTTAGCATACTAAACAAGG  300

seq1  CTGCACACTGGACCTGTCATGTTTGCTTAACAGCAAAGTACATGGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACTGGACCTGTCATGTTTGCTTAACAGCAAAGTACATGGATGAG  350

seq1  TGGCGTCTGTAGCTTATTCTCAAAAACCAGTAATCAGGCGATTAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCTGTAGCTTATTCTCAAAAACCAGTAATCAGGCGATTAAAATAT  400

seq1  CTTAATTTAGGGCAGGCTATATCTAAATATATTGAGCTATGGTTTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTAGGGCAGGCTATATCTAAATATATTGAGCTATGGTTTTTAAT  450

seq1  TTTACAGTTGGAAAACATTTTTCTCAAAATTAGTTGAATTAAAAACAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTTGGAAAACATTTTTCTCAAAATTAGTTGAATTAAAAACAATT  500

seq1  TATTCAGAAAAATTAGTAGCTCTTCTATATCCAAATGACATTCTGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAAAAATTAGTAGCTCTTCTATATCCAAATGACATTCTGGGAAA  550

seq1  GAAATCAGGGAAACAAAAATTTTGACTGTAGCCTCAAATAATGCAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGGAAACAAAAATTTTGACTGTAGCCTCAAATAATGCAAATAT  600

seq1  CCTGGGTAACTGTAACCTTAGAAGTAGAAGACTCATATAATAAAAACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAACTGTAACCTTAGAAGTAGAAGACTCATATAATAAAAACTTC  650

seq1  CAGAATTTGAAGAAACAAACTGGAGAAGATTTCAGAAGATATAAAGATCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGAAGAAACAAACTGGAGAAGATTTCAGAAGATATAAAGATCG  700

seq1  TCTATGTTCATGGATATGTAGGATCAACATAGTAAAAATGGGTATTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTCATGGATATGTAGGATCAACATAGTAAAAATGGGTATTTTAC  750

seq1  TAAAAGCAATCTAGATATTGGGTGTAACTCCATTAAAACGACAACACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAATCTAGATATTGGGTGTAACTCCATTAAAACGACAACACAAT  800

seq1  TCTTCACAGATCTTGAAAGAACAATTCTCAGCTTGATCTGTAAAATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGATCTTGAAAGAACAATTCTCAGCTTGATCTGTAAAATGCAA  850

seq1  ACTCCAAAGATAACTAAAAATATACTTCATAATAAAAGAACTGCTAGAGG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAGATAACT-AAAATATACTTCATAATAAAAGAACTGCTAGAGG  899

seq1  TATCACCACTTCCAATACCAAGTTTTTCCACAGAGATGTAGTAATAAAA  949
      |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATCACCACTTCCAATACCAAG-TTTTCCACAGAGATGTAGTAATAAAA  947