BAC Information

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BAC

Clone NameB6Ng01-034G05
Chromosome5 (Build37)
Map Location 150,177,325 - 150,319,011
singlet/doubletdoublet
Overlap gene6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062
Upstream geneSlc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap
Downstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034G05.bB6Ng01-034G05.g
ACCDH863156DH863157
length680779
definitionDH863156|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G05, 5' end.DH863157|Mus musculus domesticus DNA, BAC clone: B6Ng01-034G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,318,334 - 150,319,011)(150,177,325 - 150,178,102)
sequence
gaattctgggatagagccagatgctggagattcacctggaaagacgggac
tagacagctgcatggtacccgagccatgtggcagaatgtagatcagaata
agtggattatattaagttatgatctagagaggagtctagctatatggcca
aggtatttgtaaatatattttgagtttgagtctgagtcttatttttagga
gcctgaggttgggagggagaaccagacccaacttttataggaagtcactg
ggcattcagtttaggttacagttagagccggtggcttcctgtctaatgtg
agtgagcagcttcctcctgtccatctagctacctgccatgatattcagcc
tcacctcaggtctggagtaatggatgcagctggccagggggctggagcct
ctgaactgtgaaccgaggtgtgacacagaggcagagaagaggatggcgtg
ggccaccgtgtgctgagccactggctgagtgaggcagggtctgaagtctt
tgtcaagtagtttggcccgtgtatgctgagagcagatgtcctcccctaag
ggggtcactattttgtgacaggtggaatcttctgaagtggggctttgggg
aagtctttagccactgggggagtggggtagggaacatatgacccctgaag
gggtcatgagacctggaatctcttcccttg
gaattctctttcctcagggttatatgcactctcagttcaggagacagacg
ttttgcttgatgataggatgcactggtatctaagcaactgacatctttct
tctccttaagccggggtataaaatccacacatagagcaacagttgctacc
tgttgagccagagcctggctggaggggaagccccattttatctccattct
gagtccccggaaggccagccccagctttcttaagtggagagaacttcatt
catttcctaatgggtcatacttggggaaagactggagtttcttcatttta
gtgtcaggccagtaaggggttgcaaagtacagagtaaggaatgagggtaa
agcaagagggattggcccaccagtgggatttgaggactgtctcttacatg
gaggctgggatggggagactggagcagaagccgaggcaatcaaacacgcc
cctcacagttttgatccggctctcacctgtttgaaaggaaaacatctggc
ttgtcttccattgaccctgatgtaaatgggtaaaggatttcagggcacat
tcctgatagttccctgaggggacttcctaacaaaggggtggagccaagta
gctcttggaatggtctcccatcatagacattgcacttagagttttgagct
atacgaataattcagatgctacactgtaagccctaaatatacctttaagc
ccacaaacaactcccctttgtccagctttatgcctgtgttctttaaatgg
actttctgttctgaccgcactgtaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_150318334_150319011
seq2: B6Ng01-034G05.b_47_726 (reverse)

seq1  CAAGGGAAGAGACTCCAGGTCTCATGACCCCTTCA-GGGTCATATGTTCC  49
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CAAGGGAAGAGATTCCAGGTCTCATGACCCCTTCAGGGGTCATATGTTCC  50

seq1  CTACCCCACT-CCCCAGTGGCTAAAGACTTCCCCAAAGCCCCACTTCAGA  98
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCACTCCCCCAGTGGCTAAAGACTTCCCCAAAGCCCCACTTCAGA  100

seq1  AGATTCCACCTGTCACAAAATAGTGACCCCCTTAGGGGAGGACATCTGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCACCTGTCACAAAATAGTGACCCCCTTAGGGGAGGACATCTGCT  150

seq1  CTCAGCATACACGGGCCAAACTACTTGACAAAGACTTCAGACCCTGCCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATACACGGGCCAAACTACTTGACAAAGACTTCAGACCCTGCCTC  200

seq1  ACTCAGCCAGTGGCTCAGCACACGGTGGCCCACGCCATCCTCTTCTCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCAGTGGCTCAGCACACGGTGGCCCACGCCATCCTCTTCTCTGC  250

seq1  CTCTGTGTCACACCTCGGTTCACAGTTCAGAGGCTCCAGCCCCCTGGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCACACCTCGGTTCACAGTTCAGAGGCTCCAGCCCCCTGGCCA  300

seq1  GCTGCATCCATTACTCCAGACCTGAGGTGAGGCTGAATATCATGGCAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCCATTACTCCAGACCTGAGGTGAGGCTGAATATCATGGCAGGT  350

seq1  AGCTAGATGGACAGGAGGAAGCTGCTCACTCACATTAGACAGGAAGCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATGGACAGGAGGAAGCTGCTCACTCACATTAGACAGGAAGCCAC  400

seq1  CGGCTCTAACTGTAACCTAAACTGAATGCCCAGTGACTTCCTATAAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTAACTGTAACCTAAACTGAATGCCCAGTGACTTCCTATAAAAGT  450

seq1  TGGGTCTGGTTCTCCCTCCCAACCTCAGGCTCCTAAAAATAAGACTCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGGTTCTCCCTCCCAACCTCAGGCTCCTAAAAATAAGACTCAGA  500

seq1  CTCAAACTCAAAATATATTTACAAATACCTTGGCCATATAGCTAGACTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCAAAATATATTTACAAATACCTTGGCCATATAGCTAGACTCC  550

seq1  TCTCTAGATCATAACTTAATATAATCCACTTATTCTGATCTACATTCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGATCATAACTTAATATAATCCACTTATTCTGATCTACATTCTGC  600

seq1  CACATGGCTCGGGTACCATGCAGCTGTCTAGTCCCGTCTTTCCAGGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTCGGGTACCATGCAGCTGTCTAGTCCCGTCTTTCCAGGTGAA  650

seq1  TCTCCAGCATCTGGCTCTATCCCAGAATTC  678
      ||||||||||||||||||||||||||||||
seq2  TCTCCAGCATCTGGCTCTATCCCAGAATTC  680

seq1: chr5_150177325_150178102
seq2: B6Ng01-034G05.g_69_847

seq1  GAATTCTCTCTCCTCAGGGTTATATGCACTCTCAGTTCAGGAGACAGACG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCTCAGGGTTATATGCACTCTCAGTTCAGGAGACAGACG  50

seq1  TTTTGCTTGATGATAGGATGCACTGGTATCTAAGCAACTGACATCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGATGATAGGATGCACTGGTATCTAAGCAACTGACATCTTTCT  100

seq1  TCTCCTTAAGCCGGGGTATAAAATCCACACATAGAGCAACAGTTGCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAGCCGGGGTATAAAATCCACACATAGAGCAACAGTTGCTACC  150

seq1  TGTTGAGCCAGAGCCTGGCTGGAGGGGAAGCCCCATTTTATCTCCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCCAGAGCCTGGCTGGAGGGGAAGCCCCATTTTATCTCCATTCT  200

seq1  GAGTCCCCGGAAGGCCAGCCCCAGCTTTCTTAAGTGGAGAGAACTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCGGAAGGCCAGCCCCAGCTTTCTTAAGTGGAGAGAACTTCATT  250

seq1  CATTTCCTAATGGGTCATACTTGGGGAAAGACTGGAGTTTCTTCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAATGGGTCATACTTGGGGAAAGACTGGAGTTTCTTCATTTTA  300

seq1  GTGTCAGGCCAGTAAGGGGTTGCAAAGTACAGAGTAAGGAATGAGGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGCCAGTAAGGGGTTGCAAAGTACAGAGTAAGGAATGAGGGTAA  350

seq1  AGCAAGAGGGATTGGCCCACCAGTGGGATTTGAGGACTGTCTCTTACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGGATTGGCCCACCAGTGGGATTTGAGGACTGTCTCTTACATG  400

seq1  GAGGCTGGGATGGGGAGACTGGAGCAGAAGCCGAGGCAATCAAACACGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGATGGGGAGACTGGAGCAGAAGCCGAGGCAATCAAACACGCC  450

seq1  CCTCACAGTTTTGATCCGGCTCTCACCTGTTTGAAAGGAAAACATCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTTTTGATCCGGCTCTCACCTGTTTGAAAGGAAAACATCTGGC  500

seq1  TTGTCTTCCATTGACCCTGATGTAAATGGGTAAAGGATTTCAGGGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCATTGACCCTGATGTAAATGGGTAAAGGATTTCAGGGCACAT  550

seq1  TCCTGATAGTTCCCTGA-GGGACTTCCTAACAAAGGGGTGGAGCCAAGTA  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCTGATAGTTCCCTGAGGGGACTTCCTAACAAAGGGGTGGAGCCAAGTA  600

seq1  GCTCTTGGAATGGTCTCCCATCATAGACATTGCACTTAGAG-TTTGAGCT  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTCTTGGAATGGTCTCCCATCATAGACATTGCACTTAGAGTTTTGAGCT  650

seq1  ATACGAATAATTCAGATGCTACACTGTAAGCCCTAAATATACC-TTAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACGAATAATTCAGATGCTACACTGTAAGCCCTAAATATACCTTTAAGC  700

seq1  CCACAAACAACGCCCCTTTGTCCAGCTTTATGCCTGTGTTCCTTTAAATG  747
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CCACAAACAACTCCCCTTTGTCCAGCTTTATGCCTGTGTT-CTTTAAATG  749

seq1  GACTTTCTGTTCCTGACCGCACTGTAATCAG  778
      ||||||||||| |||||||||||||||||||
seq2  GACTTTCTGTT-CTGACCGCACTGTAATCAG  779