BAC Information

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BAC

Clone NameB6Ng01-034N21
Chromosome5 (Build37)
Map Location 58,348,274 - 58,474,212
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034N21.bB6Ng01-034N21.g
ACCDH863494DH863495
length9551,080
definitionDH863494|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N21, 5' end.DH863495|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,348,274 - 58,349,208)(58,473,129 - 58,474,212)
sequence
gaattccagcaaggacagcatgtgaacagacctgtgcttctcttctgacg
aatcctaatcaagaaggatcttgtgagcacggtttctcatcccccatctt
ctacacacactattgtccatgagtatattttccacaaagaacaatccttt
gacttaagaccaacaaagttaaattccttttgcagtagtttagtatctag
ccttaacaaagtaccaggttttgttagcaggcttctatgtgaacaagagc
atctccttcaattgtttcttgtagaagtctgacccctgaaacagataggg
acactgttcggtagcaagcagttaatgtaagttcctcaagctaccctatg
catgcatgcatgtctttgtgtttcctctatgtttttttttgttgttgttg
ttgttattggtgttgactaaatacaattaattaattaattgcagcctgat
ctctgccccccacctctcggtgaccacctcacagaatctttctcctcacc
cccatccattttgcttatgaatcccccctcccagtattgccccaccctgg
cacatctagtctctccaaggctaggcacttcctctcccactgtggccaga
caaggcagtccagttaggagaatgtgttccacagacagctttagggtaat
ccccactccagttgttatcagacccacatgaagactaagctgcacatctg
ctacaaaggtgcctaggtccagcctatttattctttttggttgttggttc
agtttctgagagcccccaaggatccaggttagttgacactcttggtcttc
ctatggagttcctatcccccaccgttccctcaatccttcagacaattctt
cataagagtcccaaactcctagggatacagagacaatgtttggagcagaa
ctgagaaaggccattgagcgactgtcccattggggatcatccaatataca
gttac
gaattcagattagtgattttcaaatacttccagtcagttgactgccttga
gagtatgacaggcattagcacaaaaattatcaaggagaagaggcactctt
tcatattttaacatcaagtatccatttttaaggagtcagcaataatgttt
taagtcaaatcattcagaagatgttctttccattgctaattctgataatt
atcactgatacccttgacatgtattttttattaaagcatgcctcgtgcct
tcaagaattcaagaaactgaaggaaggcgagcaagaatgtcacgcaaagt
gaatctggggcctgcatgagacacaaagaaaagatgaggggaaattgagc
agaaggaactgagcctgtagtattgattcataagactgagttcacccaag
ctactgtgtggtgtgcatgctgcttatactttgctggcagaaatgttacc
ctgaacttgcaaatttctttctatcttccaagcccgatacattttatctt
tatgttttctctgaatgactcagaacaaggcagtgtcctcaactaatttc
ctagccaagcatgtgaaaaataacctccatataggcacacacaggcccaa
agcatatgttgaaaagatattctagctcttttactgtataataagaaagt
tgggagtacagaatctagagaaagaaagctgctttcaaatcaattgggta
tgtgactctcgtcactgtatataaaactctctagtttcttacagaaggat
ttaggacatttaactgtatctttccccctttctaattataggaacacaat
gagttaatgcatgtaaagtgctaagaaggatgcctttgctgtagaatcat
ccagtctttccaatagctaattatgggcatctatttgtgcataattaata
attaactgtgtcctactgtccagttctgggactgaatcacacttccagag
caaagtagataaaatcgtcctcatacaatttagttggaatggcagaaagg
gacgattagatgaaattttgaaactcatcaaccattcctgtctccttcca
tgtggtttccagttttcggcttggtacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58348274_58349208
seq2: B6Ng01-034N21.b_47_975

seq1  GAATTCCAGCAAGGACAGCATGTGAACAGACCTGTGCTTCTCTTCTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAAGGACAGCATGTGAACAGACCTGTGCTTCTCTTCTGACG  50

seq1  AATCCTAATCAAGAAGGATCTTGTGAGCACGGTTTCTCATCCCCCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAATCAAGAAGGATCTTGTGAGCACGGTTTCTCATCCCCCATCTT  100

seq1  CTACACACACTATTGTCCATGAGTATATTTTCCACAAAGAACAATCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACACTATTGTCCATGAGTATATTTTCCACAAAGAACAATCCTTT  150

seq1  GACTTAAGACCAACAAAGTTAAATTCCTTTTGCAGTAGTTTAGTATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGACCAACAAAGTTAAATTCCTTTTGCAGTAGTTTAGTATCTAG  200

seq1  CCTTAACAAAGTACCAGGTTTTGTTAGCAGGCTTCTATGTGAACAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACAAAGTACCAGGTTTTGTTAGCAGGCTTCTATGTGAACAAGAGC  250

seq1  ATCTCCTTCAATTGTTTCTTGTAGAAGTCTGACCCCTGAAACAGATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTCAATTGTTTCTTGTAGAAGTCTGACCCCTGAAACAGATAGGG  300

seq1  ACACTGTTCGGTAGCAAGCAGTTAATGTAAGTTCCTCAAGCTACCCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTCGGTAGCAAGCAGTTAATGTAAGTTCCTCAAGCTACCCTATG  350

seq1  CATGCATGCATGTCTTTGTGTTTCCTCTATGTTTTTTTTTGTTGTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCATGTCTTTGTGTTTCCTCTATGTTTTTTTTTGTTGTTGTTG  400

seq1  TTGTTATTGGTGTTGACTAAATACAATTAATTAATTAATTGCAGCCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGGTGTTGACTAAATACAATTAATTAATTAATTGCAGCCTGAT  450

seq1  CTCTGCCCCCCACCTCTCGGTGACCACCTCACAGAATCTTTCTCCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCCCCACCTCTCGGTGACCACCTCACAGAATCTTTCTCCTCACC  500

seq1  CCCATCCATTTTGCTTATGAATCCCCCCTCCCAGTATTGCCCCACCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATTTTGCTTATGAATCCCCCCTCCCAGTATTGCCCCACCCTGG  550

seq1  CACATCTAGTCTCTCCAAGGCTAGGCACTTCCTCTCCCACTGTGGCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTAGTCTCTCCAAGGCTAGGCACTTCCTCTCCCACTGTGGCCAGA  600

seq1  CAAGGCAGTCCAGTTAGGAGAATGTGTTCCACAGACAGCTTTAGGGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGTCCAGTTAGGAGAATGTGTTCCACAGACAGCTTTAGGGTAAT  650

seq1  CCCCACTCCAGTTGTTATCAGACCCACATGAAGACTAAGCTGCACATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCAGTTGTTATCAGACCCACATGAAGACTAAGCTGCACATCTG  700

seq1  CTACAAAGGTGCCTAGGTCCAGCCTATTTATTCTTTTTGGTTGTTGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGGTGCCTAGGTCCAGCCTATTTATTCTTTTTGGTTGTTGGTTC  750

seq1  AGTTTCTGAGAGCCCCCAAGGATCCAGGTTAGTTGACACTCTTGGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGAGAGCCCCCAAGGATCCAGGTTAGTTGACACTCTTGGTCTTC  800

seq1  CTATGGAGTTCCTATCCCCCACCGTTCCCTCAATCCTTCAGACAATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGTTCCTATCCCCCACCGTTCCCTCAATCCTTCAGACAATTCTT  850

seq1  CAATAAGAGTCCCCAAACTCCTAGGGGATACAGAGACAATGTTTGGAGCA  900
      | |||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  C-ATAAGAGT-CCCAAACTCCTA-GGGATACAGAGACAATGTTTGGAGCA  897

seq1  GAAACTGAAGGAAAGGCCATTGAGCGACTGTCCCA  935
      | ||||||  |||||||||||||||||||||||||
seq2  G-AACTGA--GAAAGGCCATTGAGCGACTGTCCCA  929

seq1: chr5_58473129_58474212
seq2: B6Ng01-034N21.g_70_1149 (reverse)

seq1  ACTGTACCAAGCAGAAAAACTGGAAACCACTATGAAGGAGACAGAAAT-G  49
      |||||||||||| | |||||||||||||||   ||||||||||| ||| |
seq2  ACTGTACCAAGCCG-AAAACTGGAAACCACATGGAAGGAGACAGGAATGG  49

seq1  TTGATGAGTTTCAAAA-TTCATCTTAATCGTTCCCTTTTCTGCCATTCCA  98
      |||||||||||||||| |||||| |||||||  || ||||||||||||||
seq2  TTGATGAGTTTCAAAATTTCATC-TAATCGT--CCCTTTCTGCCATTCCA  96

seq1  ACT-AATTGTATGA-GACGATTTTATCTTACTTTTGCTCTGGAAGTTGTG  146
      ||| |||||||||| |||||||||||| ||| ||||||||||||| ||||
seq2  ACTAAATTGTATGAGGACGATTTTATC-TAC-TTTGCTCTGGAAG-TGTG  143

seq1  ATTCAGTCCCAGAACTTGGACAGTAGGACACAGTTAATTATTACTAATGC  196
      ||||||||||||||| ||||||||||||||||||||||||||| | ||||
seq2  ATTCAGTCCCAGAAC-TGGACAGTAGGACACAGTTAATTATTAATTATGC  192

seq1  AC-AATAGATGCCCATTAATTAGCTATTGGAAAGACTGGATGATTCTACA  245
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAATAGATGCCCA-TAATTAGCTATTGGAAAGACTGGATGATTCTACA  241

seq1  GCAAAGGCATCCTTCTTAGCACTTTACATGCATTAACTCATTGTGTTCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCATCCTTCTTAGCACTTTACATGCATTAACTCATTGTGTTCCT  291

seq1  ATAATTAGAAAGGGGGAAAGATACAGTTAAATGTCCTAAATCCTTCTGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAAAGGGGGAAAGATACAGTTAAATGTCCTAAATCCTTCTGTA  341

seq1  AGAAACTAGAGAGTTTTATATACAGTGACGAGAGTCACATACCCAATTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGAGAGTTTTATATACAGTGACGAGAGTCACATACCCAATTGA  391

seq1  TTTGAAAGCAGCTTTCTTTCTCTAGATTCTGTACTCCCAACTTTCTTATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCAGCTTTCTTTCTCTAGATTCTGTACTCCCAACTTTCTTATT  441

seq1  ATACAGTAAAAGAGCTAGAATATCTTTTCAACATATGCTTTGGGCCTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAAAAGAGCTAGAATATCTTTTCAACATATGCTTTGGGCCTGTG  491

seq1  TGTGCCTATATGGAGGTTATTTTTCACATGCTTGGCTAGGAAATTAGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTATATGGAGGTTATTTTTCACATGCTTGGCTAGGAAATTAGTTG  541

seq1  AGGACACTGCCTTGTTCTGAGTCATTCAGAGAAAACATAAAGATAAAATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGCCTTGTTCTGAGTCATTCAGAGAAAACATAAAGATAAAATG  591

seq1  TATCGGGCTTGGAAGATAGAAAGAAATTTGCAAGTTCAGGGTAACATTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGGCTTGGAAGATAGAAAGAAATTTGCAAGTTCAGGGTAACATTTC  641

seq1  TGCCAGCAAAGTATAAGCAGCATGCACACCACACAGTAGCTTGGGTGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAAAGTATAAGCAGCATGCACACCACACAGTAGCTTGGGTGAAC  691

seq1  TCAGTCTTATGAATCAATACTACAGGCTCAGTTCCTTCTGCTCAATTTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTATGAATCAATACTACAGGCTCAGTTCCTTCTGCTCAATTTCC  741

seq1  CCTCATCTTTTCTTTGTGTCTCATGCAGGCCCCAGATTCACTTTGCGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTTTTCTTTGTGTCTCATGCAGGCCCCAGATTCACTTTGCGTGA  791

seq1  CATTCTTGCTCGCCTTCCTTCAGTTTCTTGAATTCTTGAAGGCACGAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGCTCGCCTTCCTTCAGTTTCTTGAATTCTTGAAGGCACGAGGC  841

seq1  ATGCTTTAATAAAAAATACATGTCAAGGGTATCAGTGATAATTATCAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAATAAAAAATACATGTCAAGGGTATCAGTGATAATTATCAGAA  891

seq1  TTAGCAATGGAAAGAACATCTTCTGAATGATTTGACTTAAAACATTATTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATGGAAAGAACATCTTCTGAATGATTTGACTTAAAACATTATTG  941

seq1  CTGACTCCTTAAAAATGGATACTTGATGTTAAAATATGAAAGAGTGCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCTTAAAAATGGATACTTGATGTTAAAATATGAAAGAGTGCCTC  991

seq1  TTCTCCTTGATAATTTTTGTGCTAATGCCTGTCATACTCTCAAGGCAGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGATAATTTTTGTGCTAATGCCTGTCATACTCTCAAGGCAGTC  1041

seq1  AACTGACTGGAAGTATTTGAAAATCACTAATCTGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTGGAAGTATTTGAAAATCACTAATCTGAATTC  1080