BAC Information

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BAC

Clone NameB6Ng01-035C19
Chromosome5 (Build37)
Map Location 31,551,820 - 31,733,733
singlet/doubletdoublet
Overlap geneNrbp1, Krtcap3, Ift172, Fndc4, Gckr
Upstream geneD5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C19.bB6Ng01-035C19.g
ACCDH863716DH863717
length997209
definitionDH863716|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C19, 5' end.DH863717|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,551,820 - 31,552,838)(31,733,525 - 31,733,733)
sequence
gaattccaagcatgtagggaacattttgctagatctaatgaaagtcatac
agatgtaatagtcttgccagatgcctgttccagtttcttgttctcttaac
aggagtttattcaaaagtgcctgcagtctgagcctgctcggagaccaaca
gccagagaacttctgttccacccagcactgtttgaagtgccctcactcaa
gcttcttgctgctcactgtatcgtggggcaccaacgtgagtcaccttgac
actgctaggaattggtcctgggactgagtccatgctataaaaagattacc
aggagtttccattcagcgtggggcatcactggcatggggtctttagtttt
ctgttaccaaagggattcttttacccctgtcctctgcctagtgtgaaaca
gatgtgtcttcacataatattccaccccattatacccaccagacatgatc
ccagagaacgctctagaggagatcaccaagaacatggataccagtgctgt
actagctgaaattcccgcagggccaggacgagaaccagttcagactttgt
gagtaaccagctgagggtctgaaagggatagattggtcactaccatccaa
ggctctgtagagtgagtctcatgttatttactttttcttccaggtactct
cagtcaccagccctagaattagacaaattccttgaagatgtcaggtgaga
tagggtgggcttctgggaggaagtagggacaggtgtcttgaagctttcac
agagtctgtgtgacttatatcatctcccaccaggaatgggatctaccctc
tgacagcctttgggctacctcggcctcagcagccacagcagaggaggtga
catcacctgttgtgcccccctctgtcaagactccaactcctgagcagctg
agtggagaacgaaagtgggactctgtatgatgtattttgccatgggatag
agacatctactagcactgtctgatgatgcattctgctgctggcaccg
tcgcaataaggtcagggtggtttgtggtctttgtcagaattcagtgtgtg
tggggggggggcaggagaattgctaatcttgttacggttatttctctgag
aacagctaatattgttttggtagcttcaggcttaatcattttgaccacta
aaactatgtttttacatttgtttagtcagccagcttccttatctggctct
gtactttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31551820_31552838
seq2: B6Ng01-035C19.b_45_1041

seq1  GAATTCCAAGCATGTAGGGAACATTTTGCTAGATCTAATGAAAGTCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCATGTAGGGAACATTTTGCTAGATCTAATGAAAGTCATAC  50

seq1  AGATGTAATAGTCTTGCCAGATGCCTGTTCCAGTTTCTTGTTCTCTTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAATAGTCTTGCCAGATGCCTGTTCCAGTTTCTTGTTCTCTTAAC  100

seq1  AGGAGTTTATTCAAAAGTGCCTGCAGTCTGAGCCTGCTCGGAGACCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTATTCAAAAGTGCCTGCAGTCTGAGCCTGCTCGGAGACCAACA  150

seq1  GCCAGAGAACTTCTGTTCCACCCAGCACTGTTTGAAGTGCCCTCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAACTTCTGTTCCACCCAGCACTGTTTGAAGTGCCCTCACTCAA  200

seq1  GCTTCTTGCTGCTCACTGTATCGTGGGGCACCAACGTGAGTCACCTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGCTGCTCACTGTATCGTGGGGCACCAACGTGAGTCACCTTGAC  250

seq1  ACTGCTAGGAATTGGTCCTGGGACTGAGTCCATGCTATAAAAAGATTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGGAATTGGTCCTGGGACTGAGTCCATGCTATAAAAAGATTACC  300

seq1  AGGAGTTTCCATTCAGCGTGGGGCATCACTGGCATGGGGTCTTTAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTCCATTCAGCGTGGGGCATCACTGGCATGGGGTCTTTAGTTTT  350

seq1  CTGTTACCAAAGGGATTCTTTTACCCCTGTCCTCTGCCTAGTGTGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCAAAGGGATTCTTTTACCCCTGTCCTCTGCCTAGTGTGAAACA  400

seq1  GATGTGTCTTCACATAATATTCCACCCCATTATACCCACCAGACATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTTCACATAATATTCCACCCCATTATACCCACCAGACATGATC  450

seq1  CCAGAGAACGCTCTAGAGGAGATCACCAAGAACATGGATACCAGTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACGCTCTAGAGGAGATCACCAAGAACATGGATACCAGTGCTGT  500

seq1  ACTAGCTGAAATTCCCGCAGGGCCAGGACGAGAACCAGTTCAGACTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGAAATTCCCGCAGGGCCAGGACGAGAACCAGTTCAGACTTTGT  550

seq1  GAGTAACCAGCTGAGGGTCTGAAAGGGATAGATTGGTCACTACCATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACCAGCTGAGGGTCTGAAAGGGATAGATTGGTCACTACCATCCAA  600

seq1  GGCTCTGTAGAGTGAGTCTCATGTTATTTACTTTTTCTTCCAGGTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTAGAGTGAGTCTCATGTTATTTACTTTTTCTTCCAGGTACTCT  650

seq1  CAGTCACCAGCCCTAGAATTAGACAAATTCCTTGAAGATGTCAGGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCAGCCCTAGAATTAGACAAATTCCTTGAAGATGTCAGGTGAGA  700

seq1  TAGGGTGGGCTTCTGGGAGGAAGTAGGGACAGGTGTCTTGAAGCTTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGGCTTCTGGGAGGAAGTAGGGACAGGTGTCTTGAAGCTTTCAC  750

seq1  AGAGTCTGTGTGACTTATATCATCTCCCACCAGGAATGGGATCTACCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTGTGACTTATATCATCTCCCACCAGGAATGGGATCTACCCTC  800

seq1  TGACAGCCTTTGGGCTACCTCGGCCTCAGCAGCCACAGCAGGAGGAGGTG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACAGCCTTTGGGCTACCTCGGCCTCAGCAGCCACAGCA-GAGGAGGTG  849

seq1  ACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCAACTCCTGAGCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATCACCTGTTGTGCCCCCCTCTGTCAAGACTCCAACTCCTGAG-CAGC  898

seq1  TGAAGTGGAGACACGAAAGGTGGGGACTCTGGTATGATTGTATTTTTGGC  950
      || |||||||| |||||||   |||||||| |||||| ||||||||  ||
seq2  TG-AGTGGAGA-ACGAAAG--TGGGACTCT-GTATGA-TGTATTTT--GC  940

seq1  CATGGGGATAGAGACATCTTAACTAAGGCACTGTCCTGTATGGAATGCAT  1000
      ||| |||||||||||||||  ||||  ||||||| ||| |||  ||||| 
seq2  CAT-GGGATAGAGACATCT--ACTA--GCACTGT-CTG-ATG--ATGCA-  980

seq1  TTCTGCCTGCTGGCCACCG  1019
      ||||| ||||||| |||||
seq2  TTCTG-CTGCTGG-CACCG  997

seq1: chr5_31733525_31733733
seq2: B6Ng01-035C19.g_74_282 (reverse)

seq1  GCAAAGTACAGAGCCAGATAAGGAAGCTGGCTGACTAAACAAATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTACAGAGCCAGATAAGGAAGCTGGCTGACTAAACAAATGTAAAA  50

seq1  ACATAGTTTTAGTGGTCAAAATGATTAAGCCTGAAGCTACCAAAACAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTTAGTGGTCAAAATGATTAAGCCTGAAGCTACCAAAACAATA  100

seq1  TTAGCTGTTCTCAGAGAAATAACCGTAACAAGATTAGCAATTCTCCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTTCTCAGAGAAATAACCGTAACAAGATTAGCAATTCTCCTGCC  150

seq1  CCCCCCCCACACACACTGAATTCTGACAAAGACCACAAACCACCCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACACACACTGAATTCTGACAAAGACCACAAACCACCCTGACC  200

seq1  TTATTGCGA  209
      |||||||||
seq2  TTATTGCGA  209