BAC Information

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BAC

Clone NameB6Ng01-035O17
Chromosome5 (Build37)
Map Location 6,134,296 - 6,321,258
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651, 4921511H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O17.bB6Ng01-035O17.g
ACCDH864259DH864260
length939946
definitionDH864259|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O17, 5' end.DH864260|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,134,296 - 6,134,999)(6,320,270 - 6,321,258)
sequence
gaattcagtaagaatgtggcctattcagtgacattcagaattgcctctag
tattgtaagagagatagtgaaagaaatcaggcattactatctactacata
gagtaagaaatctcaaggcaagctttgcaaagtatacttagaatcgccat
tacagtcaggtattgcacactacattgcatattagaagaaagttggtgag
ttcttctgataaatggagattccctgcagatacttaaaagagaagccaag
atactcccatatgcaggaaattacaatgacctaggaagaaggaaggttgt
ggtctaagaaggaactagagtaaatacttagaactatagatagatgagcc
actctcatacacaggaatttacattggcttagggggaaggtggactatac
aatagactagaataggaactatggcaagggcatgaagcccttgcccctga
cttctaagattaagctgaccttaggtggggctgtttctgatcccagttgt
taacattgatttttttttcccctgttggttcctgttaggtttttgtatgc
attcctctgttttgtgtaaaagtcacttataagactggtgctggctttga
gacaaattgcattcagagacagcacactcccttgtgtccatgtctgcttg
tcacccttctcaccaactccctgcctacctgtctggaaccctgatttctc
ccatggattgagggggccaactgagccggtcagcggcacagaaggcaaac
tcagttcctaaaggcaccttctttgctgcagctgtcttggttgaaagagc
acttgtagaatactctgtgaaagcattgcaggatcacatccaatcagagc
tttacttctaatggacctggcctgacctctgagctggagctgacgagaaa
tccttatcatgagactatcagtgtctcccttcatgcatg

gaattctacattaggctacctcagtggttctcaaacttcctaataacacc
gcaatttaatgcagttcctcatgtcatggtgaccccaaactataaaatta
tttttgtaattaactgtaattttctattatgaattataagataaatattt
gatatgtgactcctttgaaagagtcattaaatatccccaaaggggtcatg
acccgcaggttcagaaccattggaatattgaaataactagttctaaagtg
catattatctgatacccaggccaatgctggattataataacttgttttcg
catcacagactggaatacttaatttccaggactttttttttttttttttt
tttttttacaaaagcaaactactgttatagttattctcacctctgataat
cattcatgtcacagagatgtggtaagacaaagtagaagatattgccataa
agataaggtacagaatccaaggctcaagtcagtaatgtgaatatatgaag
aagacaaaacttcttccagaagtaatatcaatgacaagatgttataagca
gtagtacatgtacaggataaacaaacacatttaattgacaattaaatatt
taagtttaagaatgacacttaacatgagtaagtgttgaaaagcaaaataa
aaaggaggagtaaaattcccttatcaacacaactgtgtcattttttagaa
caacatctaatatgagactgttgcagtaatcttctccattccatatatgc
cctagcaataaaaacacaacacagttatatgattacaggctgtgtgccta
gatggcagactacgcacactacatcttccacagctatgagaccccttaga
ctgcattctcaggcatgtgctctgctctgctttctcttctctctctcggg
tcttctctccttctctcttctccccactctgctatctcttttatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6134296_6134999
seq2: B6Ng01-035O17.b_301_986

seq1  CTCCCATATGCAGGAAATTACAATGACCTAGGAAGAAGGAAGGTTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATATGCAGGAAATTACAATGACCTAGGAAGAAGGAAGGTTGTGGT  50

seq1  CTAAGAAGGAACTAGAGTAAATACTTAGAACTATAGATAGATGAGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGAACTAGAGTAAATACTTAGAACTATAGATAGATGAGCCACT  100

seq1  CTCATACACAGGAATTTACATTGGCTTAGGGGGAAGGTGGACTATACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGGAATTTACATTGGCTTAGGGGGAAGGTGGACTATACAAT  150

seq1  AGACTAGAATAGGAACTATGGCAAGGGCATGAAGCCCTTGCCCCTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAATAGGAACTATGGCAAGGGCATGAAGCCCTTGCCCCTGACTT  200

seq1  CTAAGATTAAGCTGACCTTAGGTGGGGCTGTTTCTGATCCCAGTTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTAAGCTGACCTTAGGTGGGGCTGTTTCTGATCCCAGTTGTTAA  250

seq1  CATTGATTTTTTTTTCCCCTGTTGGTTCCTGTTAGGTTTTTGTATGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTTTTTTTCCCCTGTTGGTTCCTGTTAGGTTTTTGTATGCATT  300

seq1  CCTCTGTTTTGTGTAAAAGTCACTTATAAGACTGGTGCTGGCTTTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTTGTGTAAAAGTCACTTATAAGACTGGTGCTGGCTTTGAGAC  350

seq1  AAATTGCATTCAGAGACAGCACACTCCCTTGTGTCCATGTCTGCTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCATTCAGAGACAGCACACTCCCTTGTGTCCATGTCTGCTTGTCA  400

seq1  CCCTTCTCACCAACTCCCTGCCTACCTGTCTGGAACCCTGATTTCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCACCAACTCCCTGCCTACCTGTCTGGAACCCTGATTTCTCCCA  450

seq1  TGGATTGAGGGGGGCCAACTGAGGCCGGTCAGCGGCACAGGAAGGCAAAA  500
      |||||||| ||||||||||||| |||||||||||||||| |||||| |||
seq2  TGGATTGA-GGGGGCCAACTGA-GCCGGTCAGCGGCACA-GAAGGC-AAA  496

seq1  CTCAGTTCCTAAAGGCACCTTCTTTGCTGCAGCTGTCTTGGTTTGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CTCAGTTCCTAAAGGCACCTTCTTTGCTGCAGCTGTCTTGG-TTGAAAG-  544

seq1  AGCACTTGTAGAATACTCTGTGAAAGCATTGCAAGGATCACATCCAATCA  600
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AGCACTTGTAGAATACTCTGTGAAAGCATTGC-AGGATCACATCCAATC-  592

seq1  AGAGCTTTACTTCTACATGGACCTGGCCTGAACTCTGGAGCTGGAGGCTT  650
      ||||||||||||||| ||||||||||||||| |||| |||||||| ||| 
seq2  AGAGCTTTACTTCTA-ATGGACCTGGCCTGACCTCT-GAGCTGGA-GCT-  638

seq1  GAACGAGAGAATCCCTTATTCATGAGAACTAATCAGTGTCTCCCTCCATG  700
        |||||| ||| ||||| ||||||| ||| |||||||||||||| ||||
seq2  -GACGAGA-AAT-CCTTA-TCATGAG-ACT-ATCAGTGTCTCCCTTCATG  682

seq1  CATG  704
      ||||
seq2  CATG  686


seq1: chr5_6320270_6321258
seq2: B6Ng01-035O17.g_67_1012 (reverse)

seq1  AGATAAAAGGGAAGGATAAGCAGAAGGTGGGGGAGAGAAGGAGGAGAAAG  50
      ||||||||| ||      ||||||  |||||   |||||    ||||   
seq2  AGATAAAAGAGA-----TAGCAGA--GTGGG---GAGAA----GAGA---  33

seq1  TGGAAGAGGGAGAGGACACGGAGGAGGAGGAAGAAGGAGAAAAGCAGAGC  100
        |||| | |||| ||| ||      |||  |||| ||| ||||||||||
seq2  --GAAG-GAGAGAAGACCCG-----AGAGAGAGAA-GAG-AAAGCAGAGC  73

seq1  AGAAGCACATGGCCTGGAGAAATTGCAAGTTCTAAGGGGTCTCATAAGCT  150
      || ||||||| |||| |||||  ||||   ||||||||||||||| ||||
seq2  AG-AGCACAT-GCCT-GAGAA--TGCA--GTCTAAGGGGTCTCAT-AGCT  115

seq1  GTGGAAGATGGTAGTGTGCGGTAGGTCTGCCCAATCTAGGCACACAGCCT  200
      ||||||||| ||||||||| ||| |||||||  |||||||||||||||||
seq2  GTGGAAGAT-GTAGTGTGC-GTA-GTCTGCC--ATCTAGGCACACAGCCT  160

seq1  GTAATCATATTAACTGTGTTGTGTTTTTATTGCTAGGGCATATATGGAAT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATA-TAACTGTGTTGTGTTTTTATTGCTAGGGCATATATGGAAT  209

seq1  GGAGAGATTTACTGCAACAGTCTCATATTTAGATGTTGTTCTAAAAAATG  300
      |||||   ||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGAAGATTACTGCAACAGTCTCATA-TTAGATGTTGTTCTAAAAAATG  258

seq1  ACACAGTTGTGTTTGATAAGGGAATTTTACTCCTCCTTTTTATTTTGCTT  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGTG-TTGATAAGGGAATTTTACTCCTCCTTTTTATTTTGCTT  307

seq1  TTCAACACTTACTCATGTTAAGTGTCATTCTTAAACTTAAATATTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTTACTCATGTTAAGTGTCATTCTTAAACTTAAATATTTAATT  357

seq1  GTCAATTAAATGTGTTTGTTTATCCTGTACATGTACTACTGCTTATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTAAATGTGTTTGTTTATCCTGTACATGTACTACTGCTTATAACA  407

seq1  TCTTGTCATTGATATTACTTCTGGAAGAAGTTTTGTCTTCTTCATATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTGATATTACTTCTGGAAGAAGTTTTGTCTTCTTCATATATT  457

seq1  CACATTACTGACTTGAGCCTTGGATTCTGTACCTTATCTTTATGGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTGACTTGAGCCTTGGATTCTGTACCTTATCTTTATGGCAATA  507

seq1  TCTTCTACTTTGTCTTACCACATCTCTGTGACATGAATGATTATCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTTGTCTTACCACATCTCTGTGACATGAATGATTATCAGAGG  557

seq1  TGAGAATAACTATAACAGTAGTTTGCTTTTGTAAAAAAAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAACTATAACAGTAGTTTGCTTTTGTAAAAAAAAAAAAAAAAAA  607

seq1  AAAAAAAGTCCTGGAAATTAAGTATTCCAGTCTGTGATGCGAAAACAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCCTGGAAATTAAGTATTCCAGTCTGTGATGCGAAAACAAGT  657

seq1  TATTATAATCCAGCATTGGCCTGGGTATCAGATAATATGCACTTTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATCCAGCATTGGCCTGGGTATCAGATAATATGCACTTTAGAAC  707

seq1  TAGTTATTTCAATATTCCAATGGTTCTGAACCTGCGGGTCATGACCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTCAATATTCCAATGGTTCTGAACCTGCGGGTCATGACCCCTT  757

seq1  TGGGGATATTTAATGACTCTTTCAAAGGAGTCACATATCAAATATTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATATTTAATGACTCTTTCAAAGGAGTCACATATCAAATATTTATC  807

seq1  TTATAATTCATAATAGAAAATTACAGTTAATTACAAAAATAATTTTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCATAATAGAAAATTACAGTTAATTACAAAAATAATTTTATAG  857

seq1  TTTGGGGTCACCATGACATGAGGAACTGCATTAAATTGCGGTGTTATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTCACCATGACATGAGGAACTGCATTAAATTGCGGTGTTATTAG  907

seq1  GAAGTTTGAGAACCACTGAGGTAGCCTAATGTAGAATTC  989
      |||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGAGAACCACTGAGGTAGCCTAATGTAGAATTC  946


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