BAC Information

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BAC

Clone NameB6Ng01-036F22
Chromosome5 (Build37)
Map Location 14,136,710 - 14,137,628
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F22.bB6Ng01-036F22.g
ACCDH864565DH864566
length1,207901
definitionDH864565|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F22, 5' end.DH864566|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactaggattactttcatatgttataggaatttccactgcacgag
gtttccctaccacctctcaaatgcctttcagtcctagaggtctttcttct
cactccttgaatcaattacatctgccctctgccttcctacctaatcctcc
tgttcttgtactgttccagttcacctataaaaatctattctatttgcccc
tcccaggttgatcatacatccccacctaatctgttctctatgactattct
ttctgggtctatggactataatttggttatcattttttaaaggcttatat
gtagatataagtgaatacataccatacttttttttcttggtctgggttac
ctgactcaggatgacttttcctagttcataccatttacctgaaaatttta
tgatgccattttttaacaactgagtaatactccattgtgtaaacctgcca
cactttattaatccattcttctgttgaggaacattcggttgcctccaatt
tctggctattatgagtgaacatgggtgatcaagtgtccctgtggtatgat
caagtatctttcaggcatatgtccaggagcaggatagctggatctagaag
tagattaattcccaactttctcatgagccttgacaatgatttaaatagca
tctgtacatcttggaactcccaccagcaatggaggagtgttctccttgct
ccatatcttcattagtatgaactatcacttgtattattttttttaatttt
taaagattcgttttatttcaatgtaggtgtgaatgaatatgtggctatcc
atgaaagccagaagacagtgttactgtgaggagctgcctgggtatgggtt
ctgggacttctggttctctatgagctagctcttttttttttttagatttt
tttaatttattttttatagtatttctcgttacatttccaatgctatccaa
aagtccaccatactcaccccccaccccgatccctaccctccactcccctt
tttggctgcgttcccttgaccgggcattaaagatgtaagtcaagggcttc
cttcaatgatgaggatagcatttttgatcatgcactaggacaagccggat
gtatctatatgtgtcacataggtgcagatctaacctgactttctagcctc
atggactgcactatgactgaataccttgtagccgaattcggacccatctg
gcctgca
gaattctttttgttttctttttaattatatcaaatcaaaatgttaagaaa
ttataggagagcttccattttaacttgtattctctatgaggctgtgccaa
aaacaaaaattacgttactgatacagtataatttcattatcaactagact
ctttttaggtttatttatttattgtgttttatgtatatgggtgctatgcc
tgcatttctgtgtgcatatccaaagagagcattaggttccgttatagata
gttttgagctgctatgtgcgtgctggttactgaactcaggaatccttgaa
gaacagccactgctcttaactcatgagctctcttccaggtctccaccccc
tttgaaatcatttatttatttttattttatgtgcactggtgttttgcttg
catgtatgtctgggtgaaggtttgggcctcttggaactggagttacagac
agttagaagtcaccatgcgggttctgggaattccacctaggtcctctgga
agaatagtcaatgctcttagccactaagacatctctccatcctcgaccaa
actttctttttcttttcttttttttctttctattttattttattttattt
ggttttttgagacagggtttctctgtctagctctggctgtcctggaactc
actgtgtagaccaggctggccttgaactcagaatccacctgcctctgcct
cccaagtgctcggattaaaggtgtgagccaccacgcccggcctcagattt
cttataataattgtaaaatatgcatttattttatcactcatcaatcatta
ttaataaagagaaaacttgtaataatccagcattgtttacttttggtatg
ggaacagagaaaactgggttgttgaaatcacattgatgattcattgagtc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14136710_14137628
seq2: B6Ng01-036F22.g_67_967

seq1  GAATTCTTTTTGTTTTCTTTTTAATTATATCAAATCAAAATGTTAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTTTCTTTTTAATTATATCAAATCAAAATGTTAAGAAA  50

seq1  TTATAGGAGAGCTTCCATTTTAACTTGTATTCTCTATGAGGCTGTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAGAGCTTCCATTTTAACTTGTATTCTCTATGAGGCTGTGCCAA  100

seq1  AAACAAAAATTACGTTACTGATACAGTATAATTTCATTATCAACTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATTACGTTACTGATACAGTATAATTTCATTATCAACTAGACT  150

seq1  CTTTTTAGGTTTATTTATTTATTGTGTTTTATGTATATGGGTGCTATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGGTTTATTTATTTATTGTGTTTTATGTATATGGGTGCTATGCC  200

seq1  TGCATTTCTGTGTGCATATCCAAAGAGAGCATTAGGTTCCGTTATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCTGTGTGCATATCCAAAGAGAGCATTAGGTTCCGTTATAGATA  250

seq1  GTTTTGAGCTGCTATGTGCGTGCTGGTTACTGAACTCAGGAATCCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGCTGCTATGTGCGTGCTGGTTACTGAACTCAGGAATCCTTGAA  300

seq1  GAACAGCCACTGCTCTTAACTCATGAGCTCTCTTCCAGGTCTCCACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCACTGCTCTTAACTCATGAGCTCTCTTCCAGGTCTCCACCCCC  350

seq1  TTTGAAATCATTTATTTATTTTTATTTTATGTGCACTGGTGTTTTGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCATTTATTTATTTTTATTTTATGTGCACTGGTGTTTTGCTTG  400

seq1  CATGTATGTCTGGGTGAAGGTTTGGGCCTCTTGGAACTGGAGTTACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTCTGGGTGAAGGTTTGGGCCTCTTGGAACTGGAGTTACAGAC  450

seq1  AGTTAGAAGTCACCATGCGGGTTCTGGGAATTCCACCTAGGTCCTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGTCACCATGCGGGTTCTGGGAATTCCACCTAGGTCCTCTGGA  500

seq1  AGAATAGTCAATGCTCTTAGCCACTAAGACATCTCTCCATCCTCGACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCAATGCTCTTAGCCACTAAGACATCTCTCCATCCTCGACCAA  550

seq1  ACTTTCTTTTTCTTTTCTTTTTTTTTCTTTCTATTTTTATTTTTATTTTT  600
      ||||||||||||||||| |||||||||||||||||||   ||||||||| 
seq2  ACTTTCTTTTTCTTTTC-TTTTTTTTCTTTCTATTTT--ATTTTATTTT-  596

seq1  ATTTTGGTTTTTTGAGACAGGGTTTCTCTGTCTAGCTCTGGCTGTCCTGG  650
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATTTGGTTTTTTGAGACAGGGTTTCTCTGTCTAGCTCTGGCTGTCCTGG  645

seq1  AACTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCT  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACTCACTGTGTAGACCAGGCTGGCCTTGAACTCAG-AATCCACCTGCCT  694

seq1  CTGCCTCCCAAGTGCTCGGATTAAAGGTGTGAGCCACCACGCCCGG-CTC  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGCCTCCCAAGTGCTCGGATTAAAGGTGTGAGCCACCACGCCCGGCCTC  744

seq1  AGAATTTCTTATAATAAATTGTAAAATATGCATTTATTTTATCACTCATC  799
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AG-ATTTCTTATAAT-AATTGTAAAATATGCATTTATTTTATCACTCATC  792

seq1  AAATCATTATTAATAAAGAGAAAACTTGTAATAAATCCAGCAATTGTTTT  849
       ||||||||||||||||||||||||||||||| |||||||| |||| |||
seq2  -AATCATTATTAATAAAGAGAAAACTTGTAAT-AATCCAGC-ATTG-TTT  838

seq1  ACTTTTGGTATTGGGAACAGAGGAGAGACTGGGTTGTCTGAGATCACATT  899
      |||||||||| |||||||||||   | |||||||||| ||| ||||||||
seq2  ACTTTTGGTA-TGGGAACAGAG--AAAACTGGGTTGT-TGAAATCACATT  884

seq1  GATGATTTCATTTGGAGTCT  919
      ||||| ||||||  ||||||
seq2  GATGA-TTCATT--GAGTCT  901