BAC Information

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BAC

Clone NameB6Ng01-036I14
Chromosome5 (Build37)
Map Location 96,544,029 - 96,657,053
singlet/doubletdoublet
Overlap geneCnot6l, LOC100040559, Mrpl1
Upstream geneLOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036I14.bB6Ng01-036I14.g
ACCDH864680DH864681
length1,098623
definitionDH864680|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I14, 5' end.DH864681|Mus musculus domesticus DNA, BAC clone: B6Ng01-036I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,655,915 - 96,657,053)(96,544,029 - 96,544,624)
sequence
gaattcaattctgaacagcacatggcagctaataactgcctgtctgtaac
tctagtcccgaggaagcccacaccttcttctggcctccaaggacaccagg
cacacatatgagacacagatttacatggagacaaaaccctataaacacaa
aataaataaataaataaataaataaataaataaataaacaaataaataaa
caaataaataaataaataaataaataatggaagtagagtgatcagaacaa
tctttataagaaatgagcataaaacacaggtaccttcttaaccagatctg
ttcctcctgcaaacgcagctccattttcttctgctattttaatttctgat
gcgttctaccaaaatacgacagtttacacattatttttaaacaggttcat
tatattgacactagctgttagaaatatcaattaaaagtaaaaattgttta
attttaattaaactataccaattttaattatatgcattagatatattaga
gtctaaaaacttcagtttgtgtgtccctggagtatttgactggcagcaga
agtatatcttgatgtcatataaagaaccaagcaagtgctgggtggtggtg
gcgcacacctttaatcccagcacttgggaggcagaggcaggtggatttct
gagttcgaggccagcctggtctacagagtgagttctaggacagccagagc
tacactgagaaaccctgtctcgaaaaccaaaaaaaaaaacaaaaaggaac
ctagcagtgtcgggaggcagaggcaggaggatctggaggatcgctgtcga
gctcaagaccagcctggtccaagcagtaaattccaggacagccgggactc
tgtgaggactgtctcaacaaacaaaaaccaagcaaagtgacagtagctgg
tctaccattatacacacctccaaggaaaaaactaaaatacagtaatctac
tactttattttataaactgatgagggaattttaagaattcaaaccaaatg
cagcccccctgcacttcgaagaaagctgattgtctgccagtccgttctta
ccgtggcttctgggaatatgtcctcctagtacgtggcatgtggcagtc
gaattccccagatgtaggaagagagcttaaggcagaggctggggttgtgg
aatgaacaaggacagacagagaacacttagaccagtgggaagtctaaggt
gcacgctgacactgcttaaacagaccaaacctatggataaggagcataga
aaagtctgaagaaaggcacagcaaacattgttaaagtgaatcatgatgga
aagtttcctagaattaggggaggaggtgctattcaaacacaggaggcatt
taggataccaaacggggtggggaaggaagaaacaaagaaaaaaaaaaatc
aaagaaaagagaacctcccttgatcatgtggtaattaaaacactaaacat
acaaaataaagtttaaaaatagtaaaagagaagtccaagtcatacacagg
ccatcagaataaaacaggttactcaattgaaaatgcaaaagccaagcaag
cctgtgtagatgtatttcaagttctgaaagacaactgccaaccccagaca
ggtattaaaactaacagtcatcattgaagaaaaaaagtaaaacttgatgt
aataaaaaatgtttttccaaaaggctaaaaaaaattcatgactactaagc
tatacaaaaaaaaaaaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96655915_96657053
seq2: B6Ng01-036I14.b_43_1140 (reverse)

seq1  GACTGCCACAATGCCACAGTAACTAAGGGAGAGACATATATTCCCAGAAG  50
      ||||||||| ||||||| || ||||  |||| |||  |||||||||||||
seq2  GACTGCCAC-ATGCCAC-GT-ACTA--GGAG-GAC--ATATTCCCAGAAG  42

seq1  GCAACGTGATAGAAACGGGACATGTGCCAGGACAATCAGCTTTTCTTCGA  100
       ||  ||   ||||   ||||   || || |||||||||| |||||||||
seq2  CCACGGT--AAGAA--CGGAC---TGGCA-GACAATCAGC-TTTCTTCGA  83

seq1  AGTTGGCAGGTGTGGCTGCATTTTGTGTTTTGATTTCTTAAAAATTTCCC  150
      |||  ||||| | |||||||||   || ||||| |||||||||  |||||
seq2  AGT--GCAGG-GGGGCTGCATT---TGGTTTGAATTCTTAAAA--TTCCC  125

seq1  CTTCATCAGTTTTATAAAATATAAGTTAGTAAGATTAACTGTATTTTAAG  200
        ||||||| ||||||||||| ||| |||| ||||| |||||||||||  
seq2  --TCATCAG-TTTATAAAATA-AAG-TAGT-AGATT-ACTGTATTTTAGT  168

seq1  TTTTTACTTTTGGGAGGTGTGTATATTGGTAGACCAGCTACTTGTCACTT  250
      ||||| |||   ||||||||||||| ||||||||||||||| ||||||||
seq2  TTTTTCCTT---GGAGGTGTGTATAATGGTAGACCAGCTAC-TGTCACTT  214

seq1  TGCTTGGTTTTTGTTTGTTGAGACAGTCCTCTACAGAGTCCTGGCTGTCC  300
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TGCTTGGTTTTTGTTTGTTGAGACAGTCCTC-ACAGAGTCCCGGCTGTCC  263

seq1  TGGAATTTACTGCTTGGACCAGGCTGGTCTTGAGCTCGACAGCGATCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTACTGCTTGGACCAGGCTGGTCTTGAGCTCGACAGCGATCCTC  313

seq1  CAGATCCTCCTGCCTCTGCCTCCCGACACTTGCTAGGTTCCTTTTTGTTT  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGATCCTCCTGCCTCTGCCTCCCGACAC-TGCTAGGTTCCTTTTTGTTT  362

seq1  TTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCAGTGTAGCTCTGGCTGT  450
      ||||||||   | |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTT---GGTTTTCGAGACAGGGTTTCTCAGTGTAGCTCTGGCTGT  409

seq1  CCTAGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACC  459

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCACCC  509

seq1  AGCACTTGCTTGGTTCTTTATATGACATCAAGATATACTTCTGCTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGCTTGGTTCTTTATATGACATCAAGATATACTTCTGCTGCCAG  559

seq1  TCAAATACTCCAGGGACACACAAACTGAAGTTTTTAGACTCTAATATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTCCAGGGACACACAAACTGAAGTTTTTAGACTCTAATATATC  609

seq1  TAATGCATATAATTAAAATTGGTATAGTTTAATTAAAATTAAACAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATATAATTAAAATTGGTATAGTTTAATTAAAATTAAACAATTTT  659

seq1  TACTTTTAATTGATATTTCTAACAGCTAGTGTCAATATAATGAACCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAATTGATATTTCTAACAGCTAGTGTCAATATAATGAACCTGTT  709

seq1  TAAAAATAATGTGTAAACTGTCGTATTTTGGTAGAACGCATCAGAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATGTGTAAACTGTCGTATTTTGGTAGAACGCATCAGAAATTA  759

seq1  AAATAGCAGAAGAAAATGGAGCTGCGTTTGCAGGAGGAACAGATCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGAAGAAAATGGAGCTGCGTTTGCAGGAGGAACAGATCTGGTT  809

seq1  AAGAAGGTACCTGTGTTTTATGCTCATTTCTTATAAAGATTGTTCTGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTACCTGTGTTTTATGCTCATTTCTTATAAAGATTGTTCTGATC  859

seq1  ACTCTACTTCCATTATTTATTTATTTATTTATTTATTTGTTTATTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTTCCATTATTTATTTATTTATTTATTTATTTGTTTATTTATTT  909

seq1  GTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGTGTTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGTGTTTATA  959

seq1  GGGTTTTGTCTCCATGTAAATCTGTGTCTCATATGTGTGCCTGGTGTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTCTCCATGTAAATCTGTGTCTCATATGTGTGCCTGGTGTCCT  1009

seq1  TGGAGGCCAGAAGAAGGTGTGGGCTTCCTCGGGACTAGAGTTACAGACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGAAGAAGGTGTGGGCTTCCTCGGGACTAGAGTTACAGACAG  1059

seq1  GCAGTTATTAGCTGCCATGTGCTGTTCAGAATTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATTAGCTGCCATGTGCTGTTCAGAATTGAATTC  1098

seq1: chr5_96544029_96544624
seq2: B6Ng01-036I14.g_66_668

seq1  GAATTCCCCAGATGTAGGAAGAGAGCTTAAGGCAGAGGCTGGGGTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGATGTAGGAAGAGAGCTTAAGGCAGAGGCTGGGGTTGTGG  50

seq1  AATGAACAAGGACAGACAGAGAACACTTAGACCAGTGGGAAGTCTAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAGGACAGACAGAGAACACTTAGACCAGTGGGAAGTCTAAGGT  100

seq1  GCACGCTGACACTGCTTAAACAGACCAAACCTATGGATAAGGAGCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTGACACTGCTTAAACAGACCAAACCTATGGATAAGGAGCATAGA  150

seq1  AAAGTCTGAAGAAAGGCACAGCAAACATTGTTAAAGTGAATCATGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAAGAAAGGCACAGCAAACATTGTTAAAGTGAATCATGATGGA  200

seq1  AAGTTTCCTAGAATTAGGGGAGGAGGTGCTATTCAAACACAGGAGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTAGAATTAGGGGAGGAGGTGCTATTCAAACACAGGAGGCATT  250

seq1  TAGGATACCAAACGGGGTGGGGAAGGAAGAAACAAAGAAAAAAAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACCAAACGGGGTGGGGAAGGAAGAAACAAAGAAAAAAAAAAATC  300

seq1  AAAGAAAAGAGAACCTCCCTTGATCATGTGGTAATTAAAACACTAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAGAACCTCCCTTGATCATGTGGTAATTAAAACACTAAACAT  350

seq1  ACAAAATAAAGTTTAAAAATAGTAAAAGAGAAGTCCAAGTCATACACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAGTTTAAAAATAGTAAAAGAGAAGTCCAAGTCATACACAGG  400

seq1  CCATCAGAATAAAACAGGTTACTCAATTGAAAATGCAAAAGCCAAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAATAAAACAGGTTACTCAATTGAAAATGCAAAAGCCAAGCAAG  450

seq1  CCTGTGTAGATGTATTTCAAGTTCTGAAAGACAACTGCCAA-CCCAGACA  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGTGTAGATGTATTTCAAGTTCTGAAAGACAACTGCCAACCCCAGACA  500

seq1  GGTA-TAAAACTAACAGTCATCATTGAAG-AAAAAAGTAAAACTTGATGT  547
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTATTAAAACTAACAGTCATCATTGAAGAAAAAAAGTAAAACTTGATGT  550

seq1  AAT-AAAAATGTTTT--CAAAAGGCT-AAAAAAATTCATGACTACTAAGC  593
      ||| |||||||||||  ||||||||| |||||||||||||||||||||||
seq2  AATAAAAAATGTTTTTCCAAAAGGCTAAAAAAAATTCATGACTACTAAGC  600

seq1  TAT  596
      |||
seq2  TAT  603