BAC Information

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BAC

Clone NameB6Ng01-037J23
Chromosome5 (Build37)
Map Location 82,022,770 - 82,220,030
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J23.bB6Ng01-037J23.g
ACCDH865424DH865425
length1,0371,027
definitionDH865424|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J23, 5' end.DH865425|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,218,978 - 82,220,030)(82,022,770 - 82,023,790)
sequence
gaattcaaaataatcagcgagctgttgaccaactggtccaaatgctgcta
gtctcattttgactcattcagcaagggaactgagatcagaggagcctggg
cctgaactgatgccatgctgttaacttagaggagggagaaacagaaagga
ggctagatttctcctagatctcttctcctgggctgctctgccacagggct
gtggaaccataaggtaatattaatgtatattctatacaactttgaactcc
tagcactctttcactgcatcctgccctatgagtttaggttgttctttaaa
gtttcgatttgaattcaactactttgaaaactacatttattttggtaaaa
tcgtgatttttttctctttatatagtgttgttttgacagtattttcaatg
agacttatcctgatgaaatgtctcatactgacaagaagataatggtccag
aaataacatatatgatattttagatatttttatgcatggtctctcagttt
cgtataacaaatgtattttcttcattgttatttctaactccatatacttc
aggaacactatgaatgccttttcacaaactttaagaacaggcaagcaaga
atgactgcttccaaactgaacgtttcaattcctgaagaacacaggcacag
gtgaattagaggatgcacaaaacagaattaagtggcaattcaatatgaac
ctcactagtacataccaagccacccatatttcatgagcgctttcaccttg
ccaataagaatatatgtgcattcacctgaaagcatacgatttgcagcaat
atgacaatcatcgagatttattttttgcccagttttcaaacttgcttcga
gcactaatatagttccattatgccttataagaactatacataaataagac
tatacataaataaaactgtaacataaataagctacacaatttcactttga
ctttaaaagaacaaaattactaagtgctcttttaggataatcattagcat
tattaatttgctgaaatagatgaaatcatctgggtgg
gaattcagctgcatctgcccatgttttcttgagtgcgcatgccttctggg
acacagtgaaggcatgggctggaaaccataaagatgactgaaatttggct
tcagttgtccttattaagagccagcagggttgacacagggtatattttgc
aatcatttgtttaattagctgagactcctaagggaaaatttgatgaaatg
gcaaatgctccaagtctgatttaaatctgtttttctatgtataacagaat
ttcacggagacttctaaaaggtaccagtgaataaaatgtgggtagacaaa
tctttgaggactaaaagcaaccattacagagaaatatgaaaataattata
tgctttaaaaatctcactcacatgaaagggcaggtaaatatttctgtttg
gcttttaaaaaaaaatcttatttggggtaaatttttctactggggtatgt
tcccctcattttcaatggtatacacataagtgtataaccaagtttacatc
tgttcttttctaatatgcaaatgacatgtatttgatttctttttgtgcaa
ttaaaagggtttctttagaagttgtacattctagacattctcctttggtt
ccttcagggtttccatttaggggctggctgattggaaggccagtaggctc
tgttttcttctgcccttgagtccaaacccaaagacagctgggacgatgaa
gcattcgccctacagtatcgctgtcccctaccccgctccccacccccaag
tagaacgcatctgggtaatctcagatgcttttgcttaaaaaaaaattaaa
aatcaactaatattatccaggaataaaaaatctcattaatgtattgactc
tagatgaataaagaccattgggctttctgaggatcctaaggctgggaggg
tgaatgcaatttggtgtttcgtatgaagctccatcatttgcagctctagt
ggcaggggactttagtggcactgtttatggagaaatggggttcaatggaa
gctgccatcctgaaatgcccgtagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82218978_82220030
seq2: B6Ng01-037J23.b_47_1083 (reverse)

seq1  CCACCCAGATGAATTTTTCATCTATTTCAGCAAATTTAATAAATGCTAAT  50
      ||||||||||||   ||||||||||||||||||| ||||| |||||||||
seq2  CCACCCAGATGA---TTTCATCTATTTCAGCAAA-TTAAT-AATGCTAAT  45

seq1  GATTATCCTTAAAAAGAGCACTTAGGTAATTTTGTTCTTTTTAAAGTCAA  100
      |||||||||  ||||||||||||| |||||||||||| ||||||||||||
seq2  GATTATCCT--AAAAGAGCACTTA-GTAATTTTGTTC-TTTTAAAGTCAA  91

seq1  AGTTGAAATTGTGTAGCTTATTTATGTTACAGTTTTTATTTATGTTATAG  150
      || ||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AG-TGAAATTGTGTAGCTTATTTATGTTACAG-TTTTATTTATG-TATAG  138

seq1  TTCTTATTTATGTTATAGTTCTTTATAAGGCATAATGGAACTATATTAGT  200
       ||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  -TCTTATTTATG-TATAGTTC-TTATAAGGCATAATGGAACTATATTAGT  185

seq1  GCTCGAAGCAAGTTTTGAAAATCTGGCAAAAAATAAATCTCGATGATTGT  250
      |||||||||||| ||||||||   ||||||||||||||||||||||||||
seq2  GCTCGAAGCAAG-TTTGAAAACTGGGCAAAAAATAAATCTCGATGATTGT  234

seq1  CATATTGCTGCAAATCGTATGCTTTCAGGTGAATGCACATATATTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGCTGCAAATCGTATGCTTTCAGGTGAATGCACATATATTCTTAT  284

seq1  TGGCAAGGTGAAAGCGCTCATGAAATATGGGTGGCTTGGTATGTACTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGTGAAAGCGCTCATGAAATATGGGTGGCTTGGTATGTACTAGT  334

seq1  GAGGTTCATATTGAATTGCCACTTAATTCTGTTTTGTGCATCCTCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCATATTGAATTGCCACTTAATTCTGTTTTGTGCATCCTCTAATT  384

seq1  CACCTGTGCCTGTGTTCTTCAGGAATTGAAACGTTCAGTTTGGAAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGCCTGTGTTCTTCAGGAATTGAAACGTTCAGTTTGGAAGCAGT  434

seq1  CATTCTTGCTTGCCTGTTCTTAAAGTTTGTGAAAAGGCATTCATAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGCTTGCCTGTTCTTAAAGTTTGTGAAAAGGCATTCATAGTGTT  484

seq1  CCTGAAGTATATGGAGTTAGAAATAACAATGAAGAAAATACATTTGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTATATGGAGTTAGAAATAACAATGAAGAAAATACATTTGTTAT  534

seq1  ACGAAACTGAGAGACCATGCATAAAAATATCTAAAATATCATATATGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACTGAGAGACCATGCATAAAAATATCTAAAATATCATATATGTTA  584

seq1  TTTCTGGACCATTATCTTCTTGTCAGTATGAGACATTTCATCAGGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGACCATTATCTTCTTGTCAGTATGAGACATTTCATCAGGATAAG  634

seq1  TCTCATTGAAAATACTGTCAAAACAACACTATATAAAGAGAAAAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGAAAATACTGTCAAAACAACACTATATAAAGAGAAAAAAATCA  684

seq1  CGATTTTACCAAAATAAATGTAGTTTTCAAAGTAGTTGAATTCAAATCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTACCAAAATAAATGTAGTTTTCAAAGTAGTTGAATTCAAATCGA  734

seq1  AACTTTAAAGAACAACCTAAACTCATAGGGCAGGATGCAGTGAAAGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAGAACAACCTAAACTCATAGGGCAGGATGCAGTGAAAGAGTG  784

seq1  CTAGGAGTTCAAAGTTGTATAGAATATACATTAATATTACCTTATGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTTCAAAGTTGTATAGAATATACATTAATATTACCTTATGGTTC  834

seq1  CACAGCCCTGTGGCAGAGCAGCCCAGGAGAAGAGATCTAGGAGAAATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTGTGGCAGAGCAGCCCAGGAGAAGAGATCTAGGAGAAATCTA  884

seq1  GCCTCCTTTCTGTTTCTCCCTCCTCTAAGTTAACAGCATGGCATCAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTTCTGTTTCTCCCTCCTCTAAGTTAACAGCATGGCATCAGTTC  934

seq1  AGGCCCAGGCTCCTCTGATCTCAGTTCCCTTGCTGAATGAGTCAAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGGCTCCTCTGATCTCAGTTCCCTTGCTGAATGAGTCAAAATGA  984

seq1  GACTAGCAGCATTTGGACCAGTTGGTCAACAGCTCGCTGATTATTTTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCAGCATTTGGACCAGTTGGTCAACAGCTCGCTGATTATTTTGAA  1034

seq1  TTC  1053
      |||
seq2  TTC  1037

seq1: chr5_82022770_82023790
seq2: B6Ng01-037J23.g_67_1093

seq1  GAATTCAGCTGCATCTGCCCATGTTTTCTTGAGTGCGCATGCCTTCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGCATCTGCCCATGTTTTCTTGAGTGCGCATGCCTTCTGGG  50

seq1  ACACAGTGAAGGCATGGGCTGGAAACCATAAAGATGACTGAAATTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGAAGGCATGGGCTGGAAACCATAAAGATGACTGAAATTTGGCT  100

seq1  TCAGTTGTCCTTATTAAGAGCCAGCAGGGTTGACACAGGGTATATTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTCCTTATTAAGAGCCAGCAGGGTTGACACAGGGTATATTTTGC  150

seq1  AATCATTTGTTTAATTAGCTGAGACTCCTAAGGGAAAATTTGATGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTGTTTAATTAGCTGAGACTCCTAAGGGAAAATTTGATGAAATG  200

seq1  GCAAATGCTCCAAGTCTGATTTAAATCTGTTTTTCTATGTATAACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTCCAAGTCTGATTTAAATCTGTTTTTCTATGTATAACAGAAT  250

seq1  TTCACGGAGACTTCTAAAAGGTACCAGTGAATAAAATGTGGGTAGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGAGACTTCTAAAAGGTACCAGTGAATAAAATGTGGGTAGACAAA  300

seq1  TCTTTGAGGACTAAAAGCAACCATTACAGAGAAATATGAAAATAATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGACTAAAAGCAACCATTACAGAGAAATATGAAAATAATTATA  350

seq1  TGCTTTAAAAATCTCACTCACATGAAAGGGCAGGTAAATATTTCTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAAATCTCACTCACATGAAAGGGCAGGTAAATATTTCTGTTTG  400

seq1  GCTTTTAAAAAAAAATCTTATTTGGGGTAAATTTTTCTACTGGGGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAAAAAAATCTTATTTGGGGTAAATTTTTCTACTGGGGTATGT  450

seq1  TCCCCTCATTTTCAATGGTATACACATAAGTGTATAACCAAGTTTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCATTTTCAATGGTATACACATAAGTGTATAACCAAGTTTACATC  500

seq1  TGTTCTTTTCTAATATGCAAATGACATGTATTTGATTTCTTTTTGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTCTAATATGCAAATGACATGTATTTGATTTCTTTTTGTGCAA  550

seq1  TTAAAAGGGTTTCTTTAGAAGTTGTACATTCTAGACATTCTCCTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGGTTTCTTTAGAAGTTGTACATTCTAGACATTCTCCTTTGGTT  600

seq1  CCTTCAGGGTTTCCATTTAGGGGCTGGCTGATTGGAAGGCCAGTAGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGTTTCCATTTAGGGGCTGGCTGATTGGAAGGCCAGTAGGCTC  650

seq1  TGTTTTCTTCTGCCCTTGAGTCCAAACCCAAAGACAGCTGGGACGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCTGCCCTTGAGTCCAAACCCAAAGACAGCTGGGACGATGAA  700

seq1  GCATTCGCCCTACAGTATCGCTGTCCCCTACCCCGCTCCCCACCCCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGCCCTACAGTATCGCTGTCCCCTACCCCGCTCCCCACCCCCAAG  750

seq1  TAGAACGCATCTGGGTAATCTCAGATGCTTTTGCTTAAAAAAAAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACGCATCTGGGTAATCTCAGATGCTTTTGCTTAAAAAAAAATTAAA  800

seq1  AATCAACT-ATATTATCCAGGAATAAAAAATCTCATTAATGTATTGACTC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTAATATTATCCAGGAATAAAAAATCTCATTAATGTATTGACTC  850

seq1  TAGATGAATAAAGACCATT-GGCTTCCTGAGGATCCTAAGGCT-GGAGGG  897
      ||||||||||||||||||| ||||| ||||||||||||||||| ||||||
seq2  TAGATGAATAAAGACCATTGGGCTTTCTGAGGATCCTAAGGCTGGGAGGG  900

seq1  TGAATGC-ATTTTGTGTTTCGTATGAAGCTCCATCATTTGCAGCTCTTAG  946
      ||||||| |||| ||||||||||||||||||||||||||||||||| |||
seq2  TGAATGCAATTTGGTGTTTCGTATGAAGCTCCATCATTTGCAGCTC-TAG  949

seq1  TGGCAGGTGACTTTAGT-GCACTGTTATTGAAGAGAT-GGGTTCAATGG-  993
      ||||||| ||||||||| ||||||||  || ||| || ||||||||||| 
seq2  TGGCAGGGGACTTTAGTGGCACTGTTTATGGAGAAATGGGGTTCAATGGA  999

seq1  AGCTGCCAGTCCTG-AATGCTCGTAGCAC  1021
      |||||||| ||||| ||||| ||||||||
seq2  AGCTGCCA-TCCTGAAATGCCCGTAGCAC  1027