BAC Information

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BAC

Clone NameB6Ng01-038E01
Chromosome5 (Build37)
Map Location 147,781,418 - 147,951,679
singlet/doubletdoublet
Overlap geneLnx2, Rpo1-3
Upstream geneCyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3
Downstream geneGsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E01.bB6Ng01-038E01.g
ACCDH865867DH865868
length520869
definitionDH865867|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E01, 5' end.DH865868|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,781,418 - 147,781,942)(147,950,812 - 147,951,679)
sequence
ccaaagaagactttcttacaataccttgtgaggtatgtaagagcctagcg
cataatcctgggcaggacttgcttgtttgcatttctgtgtaagccaaaca
aatttgtgaccagaagatatactctgttgtcgcccttaagatttatcata
tttaattttatttgtatgtggatgagtcttttgactgcatgtatgtatgt
gttcaatgtgcatgcctggtacctgtggaggccaaaagagggctttgggt
ccccttaaaactggagttacaagtcgggcgtggtggtgcacgcctttaat
cccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagc
ctggtccacaaagtgagctctaggacagccagggctatccagagaaaccc
tgtctcgaacaaacaaacaaacaaaaaactggagttacagatgattgtga
gcctccatgtgtgtgctgggaattgaacccatgttctcttgcattattat
ccactgaaccttttctcttg
gaattctacgtcagacagagcttaagcctaggagacctcaagcccaccat
gctagtgacacaccccctccaacaagcctatacctcctaggaagtaccat
tccccatgggccaaacattggcacacttaagtctatgggggccaaaccta
ttcaaacaaccacagcaacatctctaaagtctctagggcaggctgctgtt
cctgatggtgtttttctatctggattatccttgctcagcaggtaaagttt
aaggtttccggactcgctgtagagaggtactcattagcgaccttcgcggc
agttcagaatgtgagtcttcccagggccacagacactgctgaagtctcca
ttgctctgagcagtaattcagatcttgcagctctagttcttgttcttgca
aacgcttgctaatgacggaggcatctgcttccatactctgagcaccatgg
atcgtggcccattctgttttaaaagccacatttacctaacacagcatggc
cattgtgtggggaggagacattatgtatagatttgagctgaaccgtgctt
tcagtcacttgcttggaccgtgtctcgtgagcataaaggtagattattgt
gatgtgttgtcgctgttgttttctgaaacagggtctctctgtgtgtagcc
ctggctgacctgaagttcgatatgtagaccaggctggcttcgaacttata
gagatctgcctgttctctgcctcctgagtgagtactgggattaaagcctt
gtgccaccaagctctgcccaactggtgtgactttaaagacaccgagctcc
aaacacaaacacatcctgaggtactgaagatgcatagggccacatcatct
gggtggtgagggtgtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147781418_147781942
seq2: B6Ng01-038E01.b_32_557

seq1  GAATTCCCAAAGAAGACTTTCTTACAATACC-CGTGAGGTATGTAAGAGC  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCCCAAAGAAGACTTTCTTACAATACCTTGTGAGGTATGTAAGAGC  50

seq1  CTAGCGCATAATCCTGGGCAGGACTTGCTTGTTTGCATTTCTGTGTAAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCATAATCCTGGGCAGGACTTGCTTGTTTGCATTTCTGTGTAAGC  100

seq1  CAAACAAATTTGTGACCAGAAGATATACTCTGTTGTCGCCCTTAAGATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATTTGTGACCAGAAGATATACTCTGTTGTCGCCCTTAAGATTT  150

seq1  ATCATATTTAATTTTATTTGTATGTGGATGAGTCTTTTGACTGCATGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTTAATTTTATTTGTATGTGGATGAGTCTTTTGACTGCATGTAT  200

seq1  GTATGTGTTCAATGTGCATGCCTGGTACCTGTGGAGGCCAAAAGAGGGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTTCAATGTGCATGCCTGGTACCTGTGGAGGCCAAAAGAGGGCT  250

seq1  TTGGGTCCCCTTAAAACTGGAGTTACAAGTCGGGCGTGGTGGTGCACGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCCCTTAAAACTGGAGTTACAAGTCGGGCGTGGTGGTGCACGCC  300

seq1  TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAG  350

seq1  GCCAGCCTGGTCCACAAAGTGAGCTCTAGGACAGCCAGGGCTATCCAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCCACAAAGTGAGCTCTAGGACAGCCAGGGCTATCCAGAG  400

seq1  AAACCCTGTCTCGAACAAACAAACAAACAAAAAACTGGAGTTACAGATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAACAAACAAACAAACAAAAAACTGGAGTTACAGATGA  450

seq1  TTGTGAGCCTCCATGTGTGTGCTGGGAATTGAACCCATGTTCTCTTGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTGAGCCTCCATGTGTGTGCTGGGAATTGAACCCATGTTCTCTTGCAT  500

seq1  GATTATCCACTGAACCTTTTCTCTTG  525
       |||||||||||||||||||||||||
seq2  TATTATCCACTGAACCTTTTCTCTTG  526

seq1: chr5_147950812_147951679
seq2: B6Ng01-038E01.g_69_937 (reverse)

seq1  ACCCCCACCCTCACC-CCCAGATGATGTGGCCCTATGCCTCTTCAGTACC  49
      |||| |||||||||| |||||||||||||||||||||| |||||||||||
seq2  ACCCACACCCTCACCACCCAGATGATGTGGCCCTATGCATCTTCAGTACC  50

seq1  TCAGGATGTGTTTGTGTTTGGAGCTCGGTGTCTTTAAAGTCACACCAGTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTGTTTGTGTTTGGAGCTCGGTGTCTTTAAAGTCACACCAGTT  100

seq1  GGGCAGAGCTTGGTGGCACAAGGCTTTAATCCCAGTACTCACTCAGGAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGCTTGGTGGCACAAGGCTTTAATCCCAGTACTCACTCAGGAGG  150

seq1  CAGAGAACAGGCAGATCTCTATAAGTTCGAAGCCAGCCTGGTCTACATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAGGCAGATCTCTATAAGTTCGAAGCCAGCCTGGTCTACATAT  200

seq1  CGAACTTCAGGTCAGCCAGGGCTACACACAGAGAGACCCTGTTTCAGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTTCAGGTCAGCCAGGGCTACACACAGAGAGACCCTGTTTCAGAAA  250

seq1  ACAACAGCGACAACACATCACAATAATCTACCTTTATGCTCACGAGACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCGACAACACATCACAATAATCTACCTTTATGCTCACGAGACAC  300

seq1  GGTCCAAGCAAGTGACTGAAAGCACGGTTCAGCTCAAATCTATACATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGCAAGTGACTGAAAGCACGGTTCAGCTCAAATCTATACATAAT  350

seq1  GTCTCCTCCCCACACAATGGCCATGCTGTGTTAGGTAAATGTGGCTTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCCCCACACAATGGCCATGCTGTGTTAGGTAAATGTGGCTTTTA  400

seq1  AAACAGAATGGGCCACGATCCATGGTGCTCAGAGTATGGAAGCAGATGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGGGCCACGATCCATGGTGCTCAGAGTATGGAAGCAGATGCC  450

seq1  TCCGTCATTAGCAAGCGTTTGCAAGAACAAGAACTAGAGCTGCAAGATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCATTAGCAAGCGTTTGCAAGAACAAGAACTAGAGCTGCAAGATCT  500

seq1  GAATTACTGCTCAGAGCAATGGAGACTTCAGCAGTGTCTGTGGCCCTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTGCTCAGAGCAATGGAGACTTCAGCAGTGTCTGTGGCCCTGGG  550

seq1  AAGACTCACATTCTGAACTGCCGCGAAGGTCGCTAATGAGTACCTCTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCACATTCTGAACTGCCGCGAAGGTCGCTAATGAGTACCTCTCTA  600

seq1  CAGCGAGTCCGGAAACCTTAAACTTTACCTGCTGAGCAAGGATAATCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGTCCGGAAACCTTAAACTTTACCTGCTGAGCAAGGATAATCCAG  650

seq1  ATAGAAAAACACCATCAGGAACAGCAGCCTGCCCTAGAGACTTTAGAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAACACCATCAGGAACAGCAGCCTGCCCTAGAGACTTTAGAGAT  700

seq1  GTTGCTGTGGTTGTTTGAATAGGTTTGGCCCCCATAGACTTAAGTGTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTGGTTGTTTGAATAGGTTTGGCCCCCATAGACTTAAGTGTGCC  750

seq1  AATGTTTGGCCCATGGGGAATGGTACTTCCTAGGAGGTATAGGCTTGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGGCCCATGGGGAATGGTACTTCCTAGGAGGTATAGGCTTGTTG  800

seq1  GAGGGGGTGTGTCACTAGCATGGTGGGCTTGAGGTCTCCTAGGCTTAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGTGTCACTAGCATGGTGGGCTTGAGGTCTCCTAGGCTTAAGC  850

seq1  TCTGTCTGACGTAGAATTC  868
      |||||||||||||||||||
seq2  TCTGTCTGACGTAGAATTC  869