BAC Information

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BAC

Clone NameB6Ng01-038K05
Chromosome5 (Build37)
Map Location 105,980,147 - 105,981,009
singlet/doubletsinglet
Overlap geneLrrc8c
Upstream geneD930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
Downstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K05.bB6Ng01-038K05.g
ACCDH866140DH866141
length1,026866
definitionDH866140|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K05, 5' end.DH866141|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaatttctccttcgcctcggacgtgtcactccctgattggctgcagccca
tcggccgagttgacgtcacggggaaggcagagcacaagtagtcataagat
acccttggcacatgcgcagattatttgtttaccacttagaacacagctgt
cagcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctcccc
ctatccttttaataagagcaaataggccacccatattaatgagagtggag
atagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggatta
gctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgt
gtcgttttgcctgggggaagggaactaggacactgaaccttcatgaaaga
tgacatgtctccctagaataggctcatatatgccgcagagcctttccatt
gcagtgcttagccttgcaactctctcgggctgctgaagcacactcactcc
atctcgtgcaatgagtctagcctcgtgagatgtaagagctgagtggccag
cgacctattgcctaagcatagataaccatatatcagggggagctccatgt
tctagagctgcaagcgcctgggcaataaccaccttgtctctcctagttta
ggcctttaagcttacagaccaatcaaagaagcaacactaatccacagcaa
agtgtatcttcaaataatattaatcccacccatttttaaagaaagaaaat
gctgaggagatccaattgggtaatcctttggtcagcgacaggtccaagcg
cgtggagttgacctgaagtctcaattcccgaaggatctgttcaaattcag
ccatcccattctgtaacatatactgaatagactttttgacaaattagctg
tcctagtaaatttaacatactggaatggaagaacacacaatcccggaaac
tttgttcactccctgctgagttattggcattatgcatctagttgtacttg
gacaaggatctatgagttgattacca
gaattccacatttggagatgttttcttgggttgccctttgagaatattaa
taccaggagctggggggatggcccattgggtaaagttcttggacctgagt
ttcaactctcagcatccatatatgagccaggcatggtatacatgggggag
ttgaaaatagatggactctctggggcttgttggccagccagtggagctga
atcagtgagttccatgctcagtgagagacctgtatcaaagaataaagagc
aatcatgggagagaggcggcatcagcatctgggtctcacatgcatacgca
tgcacaaaccacaagaaaatgtacatatgccatatatatgcatgcgcata
catcccgacacaaacacttgcagtacactatcccatacacccatacacta
aattttgcacatacgtacactatcacacacacaactaactcttgcacagt
agtgtactacaacacgcacaccccccacacacatactaactcttgcacag
cagtaaactatccagtgcacccacaatcactaagtcttgcacagcagtac
tatcccacacacacagtgactcatgcacagaagtatactatcaaacacac
acacacagagtaactcttgcacagcactacatatgtctctttctctctct
ctcttttctctctcatgatgcacaaaacacactaactctttgcacatcac
tacactatcaaacacacacacactaactcttgcacagcagtttactatgt
ctctctctcacacatacatacacactaatttcttgcacagcactacacta
tgtctctttctctctctcacacacacacactattcttgcccagcactaca
ctatcacacccacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105980147_105981009
seq2: B6Ng01-038K05.g_67_932 (reverse)

seq1  TGTGTGTGTGTGATAGTGTAGTGCTGTGCAAGAATTAGTGTGTGTGTGTG  50
      |||||| ||||||||||||||||||| ||||||| |||||||||||||||
seq2  TGTGTGGGTGTGATAGTGTAGTGCTGGGCAAGAA-TAGTGTGTGTGTGTG  49

seq1  AGAGAGAGAAAGAGACATAGTGTAGTGCTGTGCAAG-AATTAGTGTGTAT  99
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAGAGAGAAAGAGACATAGTGTAGTGCTGTGCAAGAAATTAGTGTGTAT  99

seq1  GTATGTGTGAGAGAGAGACATAGTAAACTGCTGTGCAAGAGTTAGTGTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGAGAGAGAGACATAGTAAACTGCTGTGCAAGAGTTAGTGTGT  149

seq1  GTGTGTTTGATAGTGTAGTGATGTGC-AAGAGTTAGTGTG-TTTGTGCAT  197
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  GTGTGTTTGATAGTGTAGTGATGTGCAAAGAGTTAGTGTGTTTTGTGCAT  199

seq1  CATGAGAGAG-AAAGAGAGAGAGAGAAAGAGACATATGTAGTGCTGTGCA  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGAGAAAAGAGAGAGAGAGAAAGAGACATATGTAGTGCTGTGCA  249

seq1  AGAGTTACTCTGTGTGTGTGTGTTTGATAGTATACTTCTGTGCATGAGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACTCTGTGTGTGTGTGTTTGATAGTATACTTCTGTGCATGAGTC  299

seq1  ACTGTGTGTGTGGGATAGTACTGCTGTGCAAGACTTAGTGATTGTGGGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGTGTGGGATAGTACTGCTGTGCAAGACTTAGTGATTGTGGGTG  349

seq1  CACTGGATAGTTTACTGCTGTGCAAGAGTTAGTATGTGTGTGGGGGGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATAGTTTACTGCTGTGCAAGAGTTAGTATGTGTGTGGGGGGTGT  399

seq1  GCGTGTTGTAGTACACTACTGTGCAAGAGTTAGTTGTGTGTGTGATAGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTGTAGTACACTACTGTGCAAGAGTTAGTTGTGTGTGTGATAGTG  449

seq1  TACGTATGTGCAAAATTTAGTGTATGGGTGTATGGGATAGTGTACTGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATGTGCAAAATTTAGTGTATGGGTGTATGGGATAGTGTACTGCAA  499

seq1  GTGTTTGTGTCGGGATGTATGCGCATGCATATATATGGCATATGTACATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTCGGGATGTATGCGCATGCATATATATGGCATATGTACATT  549

seq1  TTCTTGTGGTTTGTGCATGCGTATGCATGTGAGACCCAGATGCTGATGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGTTTGTGCATGCGTATGCATGTGAGACCCAGATGCTGATGCC  599

seq1  GCCTCTCTCCCATGATTGCTCTTTATTCTTTGATACAGGTCTCTCACTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTCCCATGATTGCTCTTTATTCTTTGATACAGGTCTCTCACTGA  649

seq1  GCATGGAACTCACTGATTCAGCTCCACTGGCTGGCCAACAAGCCCCAGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAACTCACTGATTCAGCTCCACTGGCTGGCCAACAAGCCCCAGAG  699

seq1  AGTCCATCTATTTTCAACTCCCCCATGTATACCATGCCTGGCTCATATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCTATTTTCAACTCCCCCATGTATACCATGCCTGGCTCATATAT  749

seq1  GGATGCTGAGAGTTGAAACTCAGGTCCAAGAACTTTACCCAATGGGCCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGAGAGTTGAAACTCAGGTCCAAGAACTTTACCCAATGGGCCAT  799

seq1  CCCCCCAGCTCCTGGTATTAATATTCTCAAAGGGCAACCCAAGAAAACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGCTCCTGGTATTAATATTCTCAAAGGGCAACCCAAGAAAACAT  849

seq1  CTCCAAATGTGGAATTC  863
      |||||||||||||||||
seq2  CTCCAAATGTGGAATTC  866