BAC Information

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BAC

Clone NameB6Ng01-038M21
Chromosome5 (Build37)
Map Location 5,638,354 - 5,639,541
singlet/doubletsinglet
Overlap geneA330021E22Rik
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705
Downstream geneSteap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M21.bB6Ng01-038M21.g
ACCDH866257DH866258
length1,167821
definitionDH866257|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M21, 5' end.DH866258|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttgttcagaataaaacctagagtccggctcagcatttctcta
cactgattacattctttcatgttcataatttctctaccatttgacttttt
aggtttcttctgaggtttttgtgtttgctacaatgttctggctttctcct
ttttgacattttctaccttcttagtgtcccaggttcactccttggctgtt
ctctcctgcagcctgcagcatacatgggatcttaatgatggaggtgccag
acaaggctcttcctctttttgaacctttctagtctttggatcctttgaac
ctctcttatttctgagtcacattttccaactctcagtatgaacacttccc
ataatgctcttcttggtcccttgctgtttacaagacttattttttctgac
taattcaaccactgacaggcttaattttcatttctactctgcaaatttca
agcctgtttttcttccctgatgattttcatgttcgtgcccccccaccccc
acacacactgtgttctcaagtctgtgtatctgagatctcacgctgcatat
ttaattgtagaagctgtgttctcatgctaattgttacccaaaacacctgt
ttccaatgtcctgcacatgggctaaggaagcctgcccacagttggctctg
attgggaaatacagttgccaacagccaatggctggtcagagtaaaagagg
caggacttttatatttccgggacaagggataaaaggaagaggaaggagag
attcgccatgacagagatgcagagagatcagaagtaaaggcccgccgcca
acatataagaatctggggaagcgaccccaagggccacttttggtctaggg
aatcaaagagctctggagggtggcaagaagcttgatcacctgatgggagg
tctaaacagattaactattctctgctacattaataatctccttaagtatt
tcactagttcaatgtcttctctgttctcttagtcacaaatttctagacta
ccatagatttacttttactatgtaaaacatataaaatatattatttattc
ctctctactatattactgcaattaataatcatgaagataagatgctgaat
ttactatttactcttaaaacatgctttgattaatctctctaaagtatcca
atagatttcctagctct

gaattctgcttaagggggaaacaaccatgtggatgattgttgtgtctggc
cagcagaccacaacctgggttctagcctggaaaggcattttggaaacctg
gaagagaagaggggctaggtggcgagagaaagaaatgtagccaagacagt
tattctgatcaaagctcaattttactagttccgacatctcagttataaag
gaagggggagggaacccgattcccgccgaataatctcgggtccagtagta
gggtgagcacatggtggcaccaacagcaaagcagcaggttccagcagtgg
gcgtggcagaacgaatgagcaggaagctccacccctgagcaagcaggttt
caggctgggggaggggagactacatttcctcccttttattaacaaaattt
aaaaaaagaaaaagctggctgaggggaaaaaaatttgtctatgttcaata
gttctgccggaattctagggctaaggaaaaaaacctgcttccgtgggatt
ccttaacttttcttatggtaaactgtatccagctaagactgtcctttctt
atcctagtaaacaactaactgaaaagcctggggctgtaggctctgacttt
atgatgctaattagtactgagtaggtaacttttctagttgaattttaagt
agggcgtttggaaactctggctaagtttgactgaacaaatttgaaataca
ctatattaaggataacactaagttgattttcctccgcatttttggatgat
aggtgggaaatagggagaagggatatgactggctccgtattacaaggcct
attggctttttttattttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5638354_5639541
seq2: B6Ng01-038M21.b_50_1216

seq1  GAATTCTCTTGTTCAGAATAAAACCTAGAGTCCGGCTCAGCATTTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTTCAGAATAAAACCTAGAGTCCGGCTCAGCATTTCTCTA  50

seq1  CACTGATTACATTCTTTCATGTTCATAATTTCTCTACCATTTGACTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTACATTCTTTCATGTTCATAATTTCTCTACCATTTGACTTTTT  100

seq1  AGGTTTCTTCTGAGGTTTTTGTGTTTGCTACAATGTTCTGGCTTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTCTGAGGTTTTTGTGTTTGCTACAATGTTCTGGCTTTCTCCT  150

seq1  TTTTGACATTTTCTACCTTCTTAGTGTCCCAGGTTCACTCCTTGGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATTTTCTACCTTCTTAGTGTCCCAGGTTCACTCCTTGGCTGTT  200

seq1  CTCTCCTGCAGCCTGCAGCATACATGGGATCTTAATGATGGAGGTGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGCAGCCTGCAGCATACATGGGATCTTAATGATGGAGGTGCCAG  250

seq1  ACAAGGCTCTTCCTCTTTTTGAACCTTTCTAGTCTTTGGATCCTTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTCTTCCTCTTTTTGAACCTTTCTAGTCTTTGGATCCTTTGAAC  300

seq1  CTCTCTTATTTCTGAGTCACATTTTCCAACTCTCAGTATGAACACTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTATTTCTGAGTCACATTTTCCAACTCTCAGTATGAACACTTCCC  350

seq1  ATAATGCTCTTCTTGGTCCCTTGCTGTTTACAAGACTTATTTTTTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTCTTCTTGGTCCCTTGCTGTTTACAAGACTTATTTTTTCTGAC  400

seq1  TAATTCAACCACTGACAGGCTTAATTTTCATTTCTACTCTGCAAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAACCACTGACAGGCTTAATTTTCATTTCTACTCTGCAAATTTCA  450

seq1  AGCCTGTTTTTCTTCCCTGATGATTTTCATGTTCGTGCCCCCCCACCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTTTTCTTCCCTGATGATTTTCATGTTCGTGCCCCCCCACCCCC  500

seq1  ACACACACTGTGTTCTCAAGTCTGTGTATCTGAGATCTCACGCTGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTGTGTTCTCAAGTCTGTGTATCTGAGATCTCACGCTGCATAT  550

seq1  TTAATTGTAGAAGCTGTGTTCTCATGCTAATTGTTACCCAAAACACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTAGAAGCTGTGTTCTCATGCTAATTGTTACCCAAAACACCTGT  600

seq1  TTCCAATGTCCTGCACATGGGCTAAGGAAGCCTGCCCACAGTTGGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGTCCTGCACATGGGCTAAGGAAGCCTGCCCACAGTTGGCTCTG  650

seq1  ATTGGGAAATACAGTTGCCAACAGCCAATGGCTGGTCAGAGTAAAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAATACAGTTGCCAACAGCCAATGGCTGGTCAGAGTAAAAGAGG  700

seq1  CAGGACTTTTATATTTCCGGGACAAGGGATAAAAGGAAGAGGAAGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTTATATTTCCGGGACAAGGGATAAAAGGAAGAGGAAGGAGAG  750

seq1  ATTCGCCATGACAGAGATGCAGAGAGATCAGAAGTAAAGGCCCGCCGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCCATGACAGAGATGCAGAGAGATCAGAAGTAAAGGCCCGCCGCCA  800

seq1  ACATATAAGAATCTGGGGAAGCGACCCCAAGGGCCACTTTTGGTCTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAGAATCTGGGGAAGCGACCCCAAGGGCCACTTTTGGTCTAGGG  850

seq1  AATCAAAGAGCTCTGGAGGGTGGCAAGAAGCTTGATCACCTGATGGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGAGCTCTGGAGGGTGGCAAGAAGCTTGATCACCTGATGGGAGG  900

seq1  TCTAAACAGATTAACTATTCTCTGCTACATTTAATAATCTCCTTAAGTAT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTAAACAGATTAACTATTCTCTGCTACA-TTAATAATCTCCTTAAGTAT  949

seq1  TTCACTAGTTCAAATGTCTTCTCTTGTTCTCCTTAGTCACAAATTTCTAG  1000
      ||||||||||| ||||||||||| |||||| |||||||||||||||||||
seq2  TTCACTAGTTC-AATGTCTTCTC-TGTTCT-CTTAGTCACAAATTTCTAG  996

seq1  ACTACCATAGATTTACTTTTAACTATGTAAAAACATATAAAATATAATTT  1050
      |||||||||||||||||||| ||||||| |||||||||||||||||  ||
seq2  ACTACCATAGATTTACTTTT-ACTATGT-AAAACATATAAAATATA--TT  1042

seq1  ATTTATTCTCTCT-TACTATATTAATTGCAAATTATATAATCAATGAAGA  1099
      |||||||| |||| ||||||||| | ||| ||||| |||||| |||||||
seq2  ATTTATTC-CTCTCTACTATATT-ACTGC-AATTA-ATAATC-ATGAAGA  1087

seq1  TAAGTATGCCTTAAATATTACTATATACTCTTAAGACCAATGC-TTGATA  1148
      |||| ||||  | ||| ||||||| ||||||||| ||  |||| ||||| 
seq2  TAAG-ATGC--TGAAT-TTACTATTTACTCTTAAAAC--ATGCTTTGAT-  1130

seq1  TAATCTTCTCATAAGTACACATTAAGATTTCCCTAGCTCT  1188
      ||||| ||||  |||||  || | |||||| |||||||||
seq2  TAATC-TCTCTAAAGTATCCAAT-AGATTT-CCTAGCTCT  1167


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