BAC Information

Click to search

BAC

Clone NameB6Ng01-040C12
Chromosome5 (Build37)
Map Location 52,639,277 - 52,779,032
singlet/doubletdoublet
Overlap geneSod3, Gm447
Upstream genePpargc1a, Dhx15
Downstream geneLOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040C12.bB6Ng01-040C12.g
ACCDH867210DH867211
length8961,061
definitionDH867210|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C12, 5' end.DH867211|Mus musculus domesticus DNA, BAC clone: B6Ng01-040C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,639,277 - 52,640,172)(52,777,960 - 52,779,032)
sequence
gaattcatcattgctggaaatcacaaatctctttataacacatcatgatt
gttacgatgaatgtctttaaatatttatactcctcacaactttgaaatta
tagtacttataagacctgctgctagagcctgctggatattatcaaatcat
agtttaactaaatggtttggtaactgttgccacacaactggttttgtttg
caattctatattttcacttgttttgccctgggaaatattattttttggaa
ctatatgttttgctacatattgccacagggatccagggtacaataaagac
atagaattccagatgggcttggtggcatgaaaattctaattcttggatct
gggaggcagaggcaggaagattctgaattcaaggctagtccgggcgtata
gtccgggcgtataattagagcttgtgtcaagacgccaaagcaaacggatg
tgcacacaacatacaaacaaaacagatttagaaccctgctttggctggga
aaaggttagctgacactctatgtgcagtcaggaccagctgccaggaagca
tggcaccccaacatagactctgcacattgctgagaaccaacagcagaggg
ctgcctggtgcgctggtaccctgcactcactccacagaggatggatgcca
gagcctctgaatgctgagtgtgagtgaggtcactgttccctccagaatgg
tccctagcttatgccacaccatccacggggaaggggcaatgcttttcagg
cagagcccagccccaggcactatctgccaatgcatggagaccccagcagc
catgcctcagtcagccctggccacaggacttaggaagatggtatagacat
cactctgggttatgtttccaaagtaacaagagaataccagtgttcg
gaattcccacgagaggagcccccaggctatcctgacccctgccagttccc
actcctgtctctgcttctgattctttggccgccagggcagaagagggttg
aacactcttttggtacagagaggatggagcctccctaggaggctggcaag
ctgtcatagtcagatggccatgaagtaccgtcctgaccttgacttgtgga
catactgcgttgctgtgatggagaatctgccatgaggcacctgttgcctg
ttatggtccctacagtcagtcaccaagaacccatgaaggcatttctagat
ggtgtctttgtgctctaagagtgaatgccattctggggacttcccatgtc
accctgaaccgtaaatctatagtgcgctttgggaaacctttccagatggt
agctctgaagtttctagatttattccatcaaagatagtggaagtgcctgt
cagaacttcagggtcagctccaagtatcttctcctcagaacccaaaggct
gttgccatttgcccaagacagcagcaagcaccaagcatgccagatgctag
gacccattagatacttcagtcagcgacatagacattatcaggcatttagt
aagtgcctactgtgtggagaactctctaacttaagtttctaaaaagcagg
aggaaccaaggaacacagggaggaaatggacttggtttctgattttccaa
aggaggtgtagacatctttttttaccctagtggccttctgggctctgatg
atgggaaaacaaaatcatagagctcctggaaaaattttactctaagccag
actggagcccaagctggagctcttattttgggcccattggtttcacccag
aaatcctatagccttccagccaacagttggcaatataccatgcctatggg
ctctctgaccttgtagtggcattgctgtttgtccatgcatttggtgccaa
tgtgtctgtttgtcatcccatcttcaagctgtcttccctgctgcccattc
tgttggcctgttcctgccctccgtaaaaagaacaagcatttccccctgct
cttggtttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_52639277_52640172
seq2: B6Ng01-040C12.b_34_929

seq1  GAATTCATCATTGCTGGAAATCACAAATCTCTTTATAACACATCATGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTGCTGGAAATCACAAATCTCTTTATAACACATCATGATT  50

seq1  GTTACGATGAATGTCTTTAAATATTTATACTCCTCACAACTTTGAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGATGAATGTCTTTAAATATTTATACTCCTCACAACTTTGAAATTA  100

seq1  TAGTACTTATAAGACCTGCTGCTAGAGCCTGCTGGATATTATCAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTATAAGACCTGCTGCTAGAGCCTGCTGGATATTATCAAATCAT  150

seq1  AGTTTAACTAAATGGTTTGGTAACTGTTGCCACACAACTGGTTTTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACTAAATGGTTTGGTAACTGTTGCCACACAACTGGTTTTGTTTG  200

seq1  CAATTCTATATTTTCACTTGTTTTGCCCTGGGAAATATTATTTTTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTATATTTTCACTTGTTTTGCCCTGGGAAATATTATTTTTTGGAA  250

seq1  CTATATGTTTTGCTACATATTGCCACAGGGATCCAGGGTACAATAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTTTGCTACATATTGCCACAGGGATCCAGGGTACAATAAAGAC  300

seq1  ATAGAATTCCAGATGGGCTTGGTGGCATGAAAATTCTAATTCTTGGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTCCAGATGGGCTTGGTGGCATGAAAATTCTAATTCTTGGATCT  350

seq1  GGGAGGCAGAGGCAGGAAGATTCTGAATTCAAGGCTAGTCCGGGCGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGAAGATTCTGAATTCAAGGCTAGTCCGGGCGTATA  400

seq1  GTCCGGGCGTATAATTAGAGCTTGTGTCAAGACGCCAAAGCAAACGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGGCGTATAATTAGAGCTTGTGTCAAGACGCCAAAGCAAACGGATG  450

seq1  TGCACACAACATACAAACAAAACAGATTTAGAACCCTGCTTTGGCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAACATACAAACAAAACAGATTTAGAACCCTGCTTTGGCTGGGA  500

seq1  AAAGGTTAGCTGACACTCTATGTGCAGTCAGGACCAGCTGCCAGGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAGCTGACACTCTATGTGCAGTCAGGACCAGCTGCCAGGAAGCA  550

seq1  TGGCACCCCAACATAGACTCTGCACATTGCTGAGAACCAACAGCAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCCAACATAGACTCTGCACATTGCTGAGAACCAACAGCAGAGGG  600

seq1  CTGCCTGGTGCGCTGGTACCCTGCACTCACTCCACAGAGGATGGATGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGTGCGCTGGTACCCTGCACTCACTCCACAGAGGATGGATGCCA  650

seq1  GAGCCTCTGAATGCTGAGTGTGAGTGAGGTCACTGTTCCCTCCAGAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTGAATGCTGAGTGTGAGTGAGGTCACTGTTCCCTCCAGAATGG  700

seq1  TCCCTAGCTTATGCCACACCATCCAC-GGGAAGGGGCAATGCTTTTCAGG  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCCTAGCTTATGCCACACCATCCACGGGGAAGGGGCAATGCTTTTCAGG  750

seq1  CAGAGCCCAGCCCCAGGCACTATCTGCCAATGCATGGAGACCCCAGCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCAGCCCCAGGCACTATCTGCCAATGCATGGAGACCCCAGCAGC  800

seq1  CATGCCTCAGTCAGCCCTGGCCACAGGACTTAGGAAGATGGTAAAGACCA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  CATGCCTCAGTCAGCCCTGGCCACAGGACTTAGGAAGATGGTATAGA-CA  849

seq1  TCACTCTGGGTTATGTTTCCAAAGTAACAAGAGAATACCAGTGTCCG  896
      |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCACTCTGGGTTATGTTTCCAAAGTAACAAGAGAATACCAGTGTTCG  896

seq1: chr5_52777960_52779032
seq2: B6Ng01-040C12.g_69_1129 (reverse)

seq1  AGGGAACCAGAGAGCAGGGGGAAATGCACTGTTCTTCTTTTACGGAGGGC  50
      ||| ||||| |||||||||||||||||  ||||||  |||||||||||||
seq2  AGGAAACCA-AGAGCAGGGGGAAATGC-TTGTTCT--TTTTACGGAGGGC  46

seq1  A-GAGCAGGCCACACAG-ATGGGCAGCAGGGAAGAACAGCTTTGAAGATG  98
      | || ||||||| |||| |||||||||||||||| ||||| |||||||||
seq2  AGGAACAGGCCA-ACAGAATGGGCAGCAGGGAAG-ACAGC-TTGAAGATG  93

seq1  GGAATGACAAACAGACACATTGGCACCAAATGCATGGACAAACAGCAATG  148
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-ATGACAAACAGACACATTGGCACCAAATGCATGGACAAACAGCAATG  142

seq1  CCACCTACAAGGTCAGGAGAGCCCATAGGCATGGTATATTGCCAACTGTT  198
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCA-CTACAAGGTCA-GAGAGCCCATAGGCATGGTATATTGCCAACTGTT  190

seq1  GGCTTGGAAGGCTATAGGATTTTCTGGGTGGAAACCAATGGGCCCAAAAT  248
      ||| ||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GGC-TGGAAGGCTATAGGA-TTTCTGGGT-GAAACCAATGGGCCCAAAAT  237

seq1  AAGAGCTCCAGCTTGGGCTCCAGTCTGGCTTAGAGTAAAATTTTTCCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCCAGCTTGGGCTCCAGTCTGGCTTAGAGTAAAATTTTTCCAGG  287

seq1  AGCTCTATGATTTTGTTTTCCCATTCATCAGAGCCCAGAAGGCCACTAGG  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTCTATGATTTTGTTTTCCCA-TCATCAGAGCCCAGAAGGCCACTAGG  336

seq1  GTAAAAAAAGATGTCTACACCTCCTTTGGAAAATCAGAAACCAAGTCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAGATGTCTACACCTCCTTTGGAAAATCAGAAACCAAGTCCAT  386

seq1  TTCCTCCCTGTGTTCCTTGGTTCCTCCTGCTTTTTAGAAACTTAAGTTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTGTGTTCCTTGGTTCCTCCTGCTTTTTAGAAACTTAAGTTAG  436

seq1  AGAGTTCTCCACACAGTAGGCACTTACTAAATGCCTGATAATGTCTATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTCCACACAGTAGGCACTTACTAAATGCCTGATAATGTCTATGT  486

seq1  CGCTGACTGAAGTATCTAATGGGTCCTAGCATCTGGCATGCTTGGTGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACTGAAGTATCTAATGGGTCCTAGCATCTGGCATGCTTGGTGCTT  536

seq1  GCTGCTGTCTTGGGCAAATGGCAACAGCCTTTGGGTTCTGAGGAGAAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTCTTGGGCAAATGGCAACAGCCTTTGGGTTCTGAGGAGAAGAT  586

seq1  ACTTGGAGCTGACCCTGAAGTTCTGACAGGCACTTCCACTATCTTTGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGCTGACCCTGAAGTTCTGACAGGCACTTCCACTATCTTTGATG  636

seq1  GAATAAATCTAGAAACTTCAGAGCTACCATCTGGAAAGGTTTCCCAAAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATCTAGAAACTTCAGAGCTACCATCTGGAAAGGTTTCCCAAAGC  686

seq1  GCACTATAGATTTACGGTTCAGGGTGACATGGGAAGTCCCCAGAATGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATAGATTTACGGTTCAGGGTGACATGGGAAGTCCCCAGAATGGCA  736

seq1  TTCACTCTTAGAGCACAAAGACACCATCTAGAAATGCCTTCATGGGTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTTAGAGCACAAAGACACCATCTAGAAATGCCTTCATGGGTTCT  786

seq1  TGGTGACTGACTGTAGGGACCATAACAGGCAACAGGTGCCTCATGGCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGACTGTAGGGACCATAACAGGCAACAGGTGCCTCATGGCAGA  836

seq1  TTCTCCATCACAGCAACGCAGTATGTCCACAAGTCAAGGTCAGGACGGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCACAGCAACGCAGTATGTCCACAAGTCAAGGTCAGGACGGTA  886

seq1  CTTCATGGCCATCTGACTATGACAGCTTGCCAGCCTCCTAGGGAGGCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGCCATCTGACTATGACAGCTTGCCAGCCTCCTAGGGAGGCTCC  936

seq1  ATCCTCTCTGTACCAAAAGAGTGTTCAACCCTCTTCTGCCCTGGCGGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCTGTACCAAAAGAGTGTTCAACCCTCTTCTGCCCTGGCGGCCA  986

seq1  AAGAATCAGAAGCAGAGACAGGAGTGGGAACTGGCAGGGGTCAGGATAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAGAAGCAGAGACAGGAGTGGGAACTGGCAGGGGTCAGGATAGC  1036

seq1  CTGGGGGCTCCTCTCGTGGGAATTC  1073
      |||||||||||||||||||||||||
seq2  CTGGGGGCTCCTCTCGTGGGAATTC  1061