BAC Information

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BAC

Clone NameB6Ng01-040F13
Chromosome5 (Build37)
Map Location 69,315,643 - 69,316,817
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F13.bB6Ng01-040F13.g
ACCDH867345DH867346
length1,1511,192
definitionDH867345|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F13, 5' end.DH867346|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagttgtctgtgtactacataaacaaggggcatgtgatttgca
gacactacgtgagattgcaatttaacacagtggtgttccaatgactgcat
tgtatggggcttaagtaaacccctctctaggagccatttctggttcaaat
tattgctttgaaactgaatatttttcttgatattattctctattttgatt
accttccaagaaccatttgtattcaagagtatttatggttttattttatg
atatgttttaaacaaataaaacaaagtacactttgggagtaataaatact
tgaaattgactaaaagaatactttacggtagtgacttcaactgagaacta
ggaaaagaaatgaaaatatgtaacagacaaagatggttgaaaatttatat
tcacaaaatattcaggaagtgaattattaatgtgtttatattgacagctt
ctcaaccatttcatttttaaagtaatcattaaacagccacttggaaagtg
tttgcatctgaggatttttcatggaaagtaaatctgctgacgatggtgtt
tttgatattaatctgccagttcttaatgaaatgggagagatgttacacag
agggtgtcaggttccactaattgtgctgtttgccttatgagtaagctatc
actattgattttttttgacattgtataattttttcagtgttttaaagaca
cacaaccacttctatctcttctagaaagcacaaaccctataaagataaca
ttgaatatatatgatttcctgatcattattttgtgttagggcatattttt
aattaatttattttgttgttgaggccttattctgtactcaggttagacta
aaatcacaaactgctgcctcaagagcctagagactaaaccgtttttctta
cagtctttcaaccatgtttattcccctcttgactgctggaaaaaagaaat
aagacaaattagctagagagaaaaagaatatgacacattagcctttttat
ttatcatatagtgtataggagggctatatgacattgtgaaatattatttt
atgatactgacatccagaaatgacattaagatgtatcagctcttgataaa
ctagctagaagttggataatttctcagttgagtctaaaccacgtttcttt
c
gaattcccatacacagaaccaccaacgaggcagcttacaggagctggtct
gagacccctcagtacatatatagcagaggactgcctggtctggcctcagt
gggagaagaggtacctaattctggaaaggagagacttgaagccccagaga
ggaggaaggcctggtggaggaggaacatcctgctggagtcactggggagg
aggaatgagatggggaactgctggagggagaacccatatggggccaatgg
ctggattgtaaataaatgaaataataataaaaaaaggaggatacctgtgg
gtatttctcccaccaggtgcacatcagtcacttgaaggactagacacatc
ctttctcactgaggccagacaagatatcctagttaggggaaccaggttca
caggcaggcaaaccattcagggacatctctcattccactttgtgggggga
cccatgtgaagatcaaactgcacatcagggaacctcgatccagttcatgc
ttgctttttgttggttcagtctctgagatcccccaagggtacaagttagt
tgactctgttggtcttcctgtagattccctaacctctttgactccctcag
tttccctgtccctgaattttgtacacaagactctcctggctccatataat
gtttgacagtgttatttccacatctgtttcagatagctgttgagtggagc
ctctcagagtacagttatggtagaatcctgtcaagcatatccttttgggt
ctagattacctcactcaggatattttctagttctctccatttgcttacaa
aattcatgaggtccttgtttttaatagctgaatagtattcccgttgtgta
aatgaaacacaatttctttatctattcttctctggtggatatctaggttg
tttcaagtttgtggatattacaaacacagctcttatgccaacaagttaag
atctgtatgacaagaactttagactctgaataaataaattaccggaaact
acagaaggtgaaaaagtcctcccatgcttatgaatggtaggatggatatg
aaaaggcaacctatcaagtaacttcaatctatgatacctcccatgaaatt
cacacatctttacaacccttgaagaactcacctatatgtagacacaacaa
cccggagaagcttaaatatattccggacatataaaaagactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69315643_69316817
seq2: B6Ng01-040F13.b_42_1192

seq1  GAATTCTGAGTTGTCTGTGTACTACATAAACAAGGGGCATGTGATTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTGTCTGTGTACTACATAAACAAGGGGCATGTGATTTGCA  50

seq1  GACACTACGTGAGATTGCAATTTAACACAGTGGTGTTCCAATGACTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACGTGAGATTGCAATTTAACACAGTGGTGTTCCAATGACTGCAT  100

seq1  TGTATGGGGCTTAAGTAAACCCCTCTCTAGGAGCCATTTCTGGTTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGGCTTAAGTAAACCCCTCTCTAGGAGCCATTTCTGGTTCAAAT  150

seq1  TATTGCTTTGAAACTGAATATTTTTCTTGATATTATTCTCTATTTTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTTGAAACTGAATATTTTTCTTGATATTATTCTCTATTTTGATT  200

seq1  ACCTTCCAAGAACCATTTGTATTCAAGAGTATTTATGGTTTTATTTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAAGAACCATTTGTATTCAAGAGTATTTATGGTTTTATTTTATG  250

seq1  ATATGTTTTAAACAAATAAAACAAAGTACACTTTGGGAGTAATAAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTAAACAAATAAAACAAAGTACACTTTGGGAGTAATAAATACT  300

seq1  TGAAATTGACTAAAAGAATACTTTACGGTAGTGACTTCAACTGAGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGACTAAAAGAATACTTTACGGTAGTGACTTCAACTGAGAACTA  350

seq1  GGAAAAGAAATGAAAATATGTAACAGACAAAGATGGTTGAAAATTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAAATGAAAATATGTAACAGACAAAGATGGTTGAAAATTTATAT  400

seq1  TCACAAAATATTCAGGAAGTGAATTATTAATGTGTTTATATTGACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATATTCAGGAAGTGAATTATTAATGTGTTTATATTGACAGCTT  450

seq1  CTCAACCATTTCATTTTTAAAGTAATCATTAAACAGCCACTTGGAAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCATTTCATTTTTAAAGTAATCATTAAACAGCCACTTGGAAAGTG  500

seq1  TTTGCATCTGAGGATTTTTCATGGAAAGTAAATCTGCTGACGATGGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTGAGGATTTTTCATGGAAAGTAAATCTGCTGACGATGGTGTT  550

seq1  TTTGATATTAATCTGCCAGTTCTTAATGAAATGGGAGAGATGTTACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTAATCTGCCAGTTCTTAATGAAATGGGAGAGATGTTACACAG  600

seq1  AGGGTGTCAGGTTCCACTAATTGTGCTGTTTGCCTTATGAGTAAGCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCAGGTTCCACTAATTGTGCTGTTTGCCTTATGAGTAAGCTATC  650

seq1  ACTATTGATTTTTTTTGACATTGTATAATTTTTTCAGTGTTTTAAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGATTTTTTTTGACATTGTATAATTTTTTCAGTGTTTTAAAGACA  700

seq1  CACAACCACTTCTATCTCTTCTAGAAAGCACAAACCCTATAAAGATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACTTCTATCTCTTCTAGAAAGCACAAACCCTATAAAGATAACA  750

seq1  TTGAATATATATGATTTCCTGATCATTATTTTGTGTTAGGGCATATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATATATGATTTCCTGATCATTATTTTGTGTTAGGGCATATTTTT  800

seq1  AATTAATTTATTTTGTTGTTGAGGCCTTATTCTGTACTCAGGTTAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTATTTTGTTGTTGAGGCCTTATTCTGTACTCAGGTTAGACTA  850

seq1  AAATCACAAACTGCTGCCTCAAGAGCCTAGAGACTAAACCGTTTTTCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAAACTGCTGCCTCAAGAGCCTAGAGACTAAACCGTTTTTCTTA  900

seq1  CAGTCTTTCAACCATGTTTATTCCCCTCTTGACTGCTGGAAAAAAAGAAA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTCTTTCAACCATGTTTATTCCCCTCTTGACTGCTGG-AAAAAAGAAA  949

seq1  TAAGACAAATTAGCTAGAGAGAAAAAAAGAAATATGACACATTAGCCTTT  1000
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  TAAGACAAATTAGCTAGAGAGAAAAA---GAATATGACACATTAGCCTTT  996

seq1  TTATTTATCATAATAGTGTATAGGAGGGCTATAATGACATTGTTGAAATT  1050
      ||||||||||| |||||||||||||||||||| ||||||||| ||||| |
seq2  TTATTTATCAT-ATAGTGTATAGGAGGGCTAT-ATGACATTG-TGAAA-T  1042

seq1  ATTATTTTATGATAACTGACAATACAGAAAAATGACAATAAGAAAGTATC  1100
      ||||||||||||| |||||| || |||  |||||||| |||| | |||||
seq2  ATTATTTTATGAT-ACTGAC-ATCCAG--AAATGACATTAAG-ATGTATC  1087

seq1  AGCTCTTGACAAAAACTAAGCTAGAAAGTGTGAATAAATTTCTCAAATTT  1150
      ||||||||  | ||||| |||||| |||| || || |||||||||    |
seq2  AGCTCTTG--ATAAACT-AGCTAG-AAGT-TGGAT-AATTTCTCA---GT  1128

seq1  TGAGTCTAAAACCACGTTTTCTTTC  1175
      ||||||| |||||||| ||||||||
seq2  TGAGTCT-AAACCACG-TTTCTTTC  1151