BAC Information

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BAC

Clone NameB6Ng01-040H02
Chromosome5 (Build37)
Map Location 10,244,928 - 10,248,566
singlet/doubletsinglet
Overlap geneLOC100041395, LOC381612
Upstream geneLOC654361, 9330182L06Rik, Grm3, LOC100042768, LOC625446, LOC435832
Downstream geneEG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H02.bB6Ng01-040H02.g
ACCDH867408DH867409
length1,1501,164
definitionDH867408|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H02, 5' end.DH867409|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcattcagaatacaagtccttcttttctactggaggaagcaga
agagtccatttctcatctccctcctgaccaagcttcaggttctgcctctc
tgctatgaagcattcatggacatgaggttgggcatagggacaatctggtg
gtacagcttcatagaacccacctcctataaaggatatgatgaggctgaca
ttgaagaccccagactgacaccacagggtttggagcagtgcatacctatt
gtaattggaactctttttgaaatcgatcaggtgatctctctgctcatttc
tcagctggatgaggaggtgcagctctgtggtcagcctctctttttccttt
ttgaactccttcttacttaggtcaggtgcagtggatgatgtgtgtcttcg
agcccctttaggtagaagaatacaaaaatactttcatgtgagaattcaaa
gagtgtaggcagaccaccaaaagagagacaatgcctggaaactattgaca
ccagaaagagtttgttctgggcttgagatgcctccacagtgggtctcagt
tctaccagtactctagagagaccaggagatgtaaacagccaggtgtttcc
tctgtctccctaaacaagcttattattaccagagagatgtctccctaaac
aagcttattattaccagagagacagctttctcaggatgattatcaattga
acagagtgtaatttggcttcagagccatcagtcccgtggtttcacaagtc
agatggtaaaatcacaatttctcaagtactttagtgcttggagatgctca
gatctcctacccagttatgctaggcccaggacttggggcttcaaaagtca
cgcagtgagagaacatggtcaaaatactatcaattgcccctactgaaaca
ccaaacacccaagaagtagcaataggatcccttctctgtctgggtgtctc
cactctgtggttacagtgtagaatgcctgcactcacaactggggattaag
aaagtaaaggtgggaacttgtcatggacaggatgtcagattattctataa
catggaggtcatggcttggagtccatccttcttatttactacttctaaat
agcccttgaagtttaaagagcctgggaaagtgaaaatacaggatgtcctc


gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggaggagctagagaaagtacccaaggagctaaagggatcttcaccctat
aggtgaacaacattatgaactaacagaccctgagttcttgactctagctg
catatgttatcaaagatgcttagtcgccatacctgatgagagccattgga
atcgcaacttggtgtgccccggtacagggaccgctagggccatagggggg
agtgggtggtgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10244928_10248566
seq2: B6Ng01-040H02.b_43_1192

seq1  GAATTCTTCATTCAGAATACAAGTCCTTCTTTTCTACTGGAGGAAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCAGAATACAAGTCCTTCTTTTCTACTGGAGGAAGCAGA  50

seq1  AGAGTCCATTTCTCATCTCCCTCCTGACCAAGCTTCAGGTTCTGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCATTTCTCATCTCCCTCCTGACCAAGCTTCAGGTTCTGCCTCTC  100

seq1  TGCTATGAAGCATTCATGGACATGAGGTTGGGCATAGGGACGATCCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TGCTATGAAGCATTCATGGACATGAGGTTGGGCATAGGGACAATCTGGTG  150

seq1  GTACAGCTTCATAGAACCCACCTCCTATAAAGGATATGATGAGGCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTTCATAGAACCCACCTCCTATAAAGGATATGATGAGGCTGACA  200

seq1  TTGAAGACCCCAGACTGACACCACAGGGTTTGGAGCAGTGCATACCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCCCAGACTGACACCACAGGGTTTGGAGCAGTGCATACCTATT  250

seq1  GTAATTGGAACTCTCTTTGAAATCGATCAGGTGATCTCTCTGCTCATTTC  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAATTGGAACTCTTTTTGAAATCGATCAGGTGATCTCTCTGCTCATTTC  300

seq1  TCATCTGGATGAGGAGGTGCAGCTCTGTGGTCAGCCTCTCTTTTTCCTTT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGATGAGGAGGTGCAGCTCTGTGGTCAGCCTCTCTTTTTCCTTT  350

seq1  TTGAACTCCTTCTTACTTAGGTCAGGTCCAGTGGATGATGTGTGTCTTCG  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGAACTCCTTCTTACTTAGGTCAGGTGCAGTGGATGATGTGTGTCTTCG  400

seq1  AGCCCCTTTAGGTAAAAGAATACAAAAATACTTTCATGTGAGAATTCAAA  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTTAGGTAGAAGAATACAAAAATACTTTCATGTGAGAATTCAAA  450

seq1  GAGTGTAGGCAGACCACCAAGAGAGAGACCATGCCTGGAAACTACTGACA  500
      |||||||||||||||||||| |||||||| |||||||||||||| |||||
seq2  GAGTGTAGGCAGACCACCAAAAGAGAGACAATGCCTGGAAACTATTGACA  500

seq1  CCAGAAAGAGTTTGTTCTGGGCTTGAGATGCCTCCACAGTGGGTCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGAGTTTGTTCTGGGCTTGAGATGCCTCCACAGTGGGTCTCAGT  550

seq1  TCTACCAGTACTCT--AGAGACCAGGAGATGTAAACAGCCAGGTGTTTCC  598
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TCTACCAGTACTCTAGAGAGACCAGGAGATGTAAACAGCCAGGTGTTTCC  600

seq1  TCTGTCTCCCTAAACATGCTTATTATTACCAGAGAGATGTCTCCCTAAAC  648
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCCTAAACAAGCTTATTATTACCAGAGAGATGTCTCCCTAAAC  650

seq1  AAGCTTATTATTACCAGAGAGACAGCTTACTCAGAATGATTATCAACTGA  698
      |||||||||||||||||||||||||||| ||||| ||||||||||| |||
seq2  AAGCTTATTATTACCAGAGAGACAGCTTTCTCAGGATGATTATCAATTGA  700

seq1  ACAGAGTGTAATTTGGCTTCAGAGCCAACAGTTCCGTGGTTTCACAAGTC  748
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  ACAGAGTGTAATTTGGCTTCAGAGCCATCAGTCCCGTGGTTTCACAAGTC  750

seq1  AGATGGTAAAATCACAA-TTCTCAAGTACTTTAGTGCTTGGAGATGCTCA  797
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATGGTAAAATCACAATTTCTCAAGTACTTTAGTGCTTGGAGATGCTCA  800

seq1  GATCTCCTACCCAGTTAAGCTAGGCCCAGGACCT-GGGCTTCAAAAGTCA  846
      ||||||||||||||||| |||||||||||||| | |||||||||||||||
seq2  GATCTCCTACCCAGTTATGCTAGGCCCAGGACTTGGGGCTTCAAAAGTCA  850

seq1  TGCAGTGAGAGAACATTGTCAAAATACTATCAATTGCCCCTACTAAAACA  896
       ||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  CGCAGTGAGAGAACATGGTCAAAATACTATCAATTGCCCCTACTGAAACA  900

seq1  CCAAACACCAAAGAAGTAGCAATAGGATCCCTTCTCTGTCTGGGTGTCTC  946
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCCAAGAAGTAGCAATAGGATCCCTTCTCTGTCTGGGTGTCTC  950

seq1  CACTCTGACAGGTCTGTGGTTACAGTGTAGAAATGCCTGCCACTCACAAC  996
      |||         |||||||||||||||||| |||||||| ||||||||||
seq2  CAC---------TCTGTGGTTACAGTGTAG-AATGCCTG-CACTCACAAC  989

seq1  TGGTGATTAAGAAAGGGAAAGTGGGAAC-TGTCATGGACAGGATGTCAGA  1045
      ||| |||||||||||  || |||||||| |||||||||||||||||||||
seq2  TGGGGATTAAGAAAGTAAAGGTGGGAACTTGTCATGGACAGGATGTCAGA  1039

seq1  GTCATTCTGAGAACAT-GAGGTCATGTCCTGGAGCACAATTCTCTCCATT  1094
       | ||||| | ||||| ||||||||| | |||||  ||  ||  ||   |
seq2  -TTATTCT-ATAACATGGAGGTCATGGCTTGGAGTCCA--TCCTTCTTAT  1085

seq1  ATACTACTCCCAAATAGCCACTGAAG-TTAAAGAGCC-CTGAGAGTG-AA  1141
       ||||||| | ||||||||  ||||| ||||||||||   || |||| ||
seq2  TTACTACTTCTAAATAGCCCTTGAAGTTTAAAGAGCCTGGGAAAGTGAAA  1135

seq1  ATACAGTCATGCCCTTCCCTAAAAGGGCATAGGTTAGCCACTCTGTGACT  1191
      ||||||  ||| |||                                   
seq2  ATACAG-GATGTCCTC----------------------------------  1150

seq1  CCTGATGGCCTCATTGTGTCACCACTTAATACCCACAGTACTCAGTGAAT  1241
                                                        
seq2  --------------------------------------------------  1150

seq1  GTAAATACTTAAGAGTTCTTAGCATAACAGTTTTGGCCTTGTCAACTCCT  1291
                                                        
seq2  --------------------------------------------------  1150

seq1  GCTTAGGGGATGGAGAAAGTAATGTTCTGAAATATGTGATATTCAAGAAT  1341
                                                        
seq2  --------------------------------------------------  1150

seq1  TTTGATAATTATGGAAATTCTTTGCTACCCAGAGACTCCAGTTTCTGTGC  1391
                                                        
seq2  --------------------------------------------------  1150

seq1  CCCATTACTAGAAAGGCCATCTCAGGCCACCCCTTCCAGGGAGCTCAACA  1441
                                                        
seq2  --------------------------------------------------  1150

seq1  TCCACTTCCCAGGACTTACTCCACATTCTCCAAGTCCACCTCCTTCGTCC  1491
                                                        
seq2  --------------------------------------------------  1150

seq1  TTCATTACTCTCAGATGGAAGGCCAGCACCCTTCCTCCTCTCTCTGGTCT  1541
                                                        
seq2  --------------------------------------------------  1150

seq1  CTCTCCCATCCACACTGGCTCTCCCAAAAAGATTGCAGAGTCGAGCAAAC  1591
                                                        
seq2  --------------------------------------------------  1150

seq1  ATGTTCACCAACCTAGTGGCTAGACACTGAGTGAGAATCCTATATGAGCT  1641
                                                        
seq2  --------------------------------------------------  1150

seq1  TGTTGCTACAACACTGGTGACATCACAGGAGATGCCAAGAAGTCTCCAGG  1691
                                                        
seq2  --------------------------------------------------  1150

seq1  AGACAATAGAGTTTCCAAGAAGAGATTGCTGATGTCATGGTCTACAGCCT  1741
                                                        
seq2  --------------------------------------------------  1150

seq1  TTGACTCCCTGCTAATGTTCATGTGTTTCAATACCAGAACACTTGTCAGA  1791
                                                        
seq2  --------------------------------------------------  1150

seq1  GGGCTTGATTTCTATTCTATAAAGGAGGGAAGGTAAAGTGGGAACTGTCA  1841
                                                        
seq2  --------------------------------------------------  1150

seq1  TGGACAGGATGTCAGAGTCATTCTGAGAACATGAGGTCATGGCCTGGAGC  1891
                                                        
seq2  --------------------------------------------------  1150

seq1  ACAATTCTCTCCATTATACTACTCCCAAATAGCCACTGAAGTTAAAGAGC  1941
                                                        
seq2  --------------------------------------------------  1150

seq1  CCTGATAGTGAAATACAGTCATGCCCTTCCCTAAAAGGGCATAGGTTAGA  1991
                                                        
seq2  --------------------------------------------------  1150

seq1  CACTCTGTGACTCCTGATGTCCTCATTGTGTTGCCATGTAATACCCACAA  2041
                                                        
seq2  --------------------------------------------------  1150

seq1  TACTCAGTGAATGTAAATACTTAAGAGTTCTTAGCATAACAGTTTTGGCC  2091
                                                        
seq2  --------------------------------------------------  1150

seq1  TTGCCAACTCCTGCTTAGGGGACGGAGAAAGTAATGTTCTGAAATCCTTG  2141
                                                        
seq2  --------------------------------------------------  1150

seq1  ATGTTCAAGAATTTTGATAATTATGGAAATTCTGTGCTACCCAGAGACTC  2191
                                                        
seq2  --------------------------------------------------  1150

seq1  CAGTTCCTGTGCCCCATTACTGGAAAGGCCATCTCAGGCCACCCCTTCCA  2241
                                                        
seq2  --------------------------------------------------  1150

seq1  GGGAGCTCAACATCCACTTCCCAGGACTTACTCCACATTCTCCAAGTCCA  2291
                                                        
seq2  --------------------------------------------------  1150

seq1  CCTCCTTCGTCCTTCATTACTCTCAGATGGAAGGCCAGCACCTTTCCTCC  2341
                                                        
seq2  --------------------------------------------------  1150

seq1  TCTCTCTGGTCTCTCTCCCATCCACACTGGCTCTCCCAAAAAGATTGCAG  2391
                                                        
seq2  --------------------------------------------------  1150

seq1  AGTCGAGCAAACATGTTCACCAACCTAGTGGCTAGACACTGAGTGAGAAT  2441
                                                        
seq2  --------------------------------------------------  1150

seq1  CCTATATGAGCTTGTTGCTACAACACTGGTGACATCACAGGAGATGCCAA  2491
                                                        
seq2  --------------------------------------------------  1150

seq1  GAACTCTCCAGGAGACAATAGAGTTTCCAAGAAGAGATTGCTGATGTCAT  2541
                                                        
seq2  --------------------------------------------------  1150

seq1  GGTCTACAGCCTTTGACTCCCTGCTAATGTTCCTGTGTTTCAATACCAGA  2591
                                                        
seq2  --------------------------------------------------  1150

seq1  ACACTTGTCAGAGGGCTTGATTTCTATTCTATAAAGGAGGGAAGGTAAAG  2641
                                                        
seq2  --------------------------------------------------  1150

seq1  TGGGAACTGTCATGGACAGGATGTCAGAGTCATTCTGAGAACATGAGGTC  2691
                                                        
seq2  --------------------------------------------------  1150

seq1  ATGGCCTGGAGCACAATTCTCTCCATTATACTACTCCCAAATAGCCACTG  2741
                                                        
seq2  --------------------------------------------------  1150

seq1  AAGTTAAAGAGCCCTGAGAGTGAAATACAGTCATGCCCTTCCCTAAAAGG  2791
                                                        
seq2  --------------------------------------------------  1150

seq1  GCATAGGTTAGACACTCTGTGACTCCTGATATCCTCATTGAGTCGCCACG  2841
                                                        
seq2  --------------------------------------------------  1150

seq1  TAATACCCACAATACTCAGTGAATGTAAATACTTAAGAGTTCTTAGCATA  2891
                                                        
seq2  --------------------------------------------------  1150

seq1  ACAGTTTTGGCCTTGTCAACTCCTGCTTAGGGGATGGAGAAAGTAATGTT  2941
                                                        
seq2  --------------------------------------------------  1150

seq1  CTGAAATATGTGATATTCAAGAATTTTGATAATTATGGAAATTCTTTGCT  2991
                                                        
seq2  --------------------------------------------------  1150

seq1  ACCCAGAGACTCCAGTTTCTGTGCCCCATTACTAGAAAGGCCATCTCAGG  3041
                                                        
seq2  --------------------------------------------------  1150

seq1  CCACCCCTTCCAGGGAGCTCAACATCCACTTCCCAGGACTTACTCCACAT  3091
                                                        
seq2  --------------------------------------------------  1150

seq1  TCTCCAAGTCCACCTCCTTCGTCCTTCATTACTCTCAGATGGAAGGCCAG  3141
                                                        
seq2  --------------------------------------------------  1150

seq1  CACCTTTCCTCCTCTCTCTGGTCTCTCTCCCATCCACACTGGCTCTCCCA  3191
                                                        
seq2  --------------------------------------------------  1150

seq1  AAAAGATTGCAGAGTCGAGCAAACATGTTCACCAACCTAGTGGCTAGACA  3241
                                                        
seq2  --------------------------------------------------  1150

seq1  CTGAGTGAGAATCCTATATGAGCTTGTTGCTACAACACTGGTGACATCAC  3291
                                                        
seq2  --------------------------------------------------  1150

seq1  AGGAGATGCCAAGAAGTCTCCAGGAGACAATAGAGTTTCCAAGAAGAGAT  3341
                                                        
seq2  --------------------------------------------------  1150

seq1  TGCTGATGTCATGGTCTACAGCCTTTGACTCCCTGCTAATGTTCACGTGT  3391
                                                        
seq2  --------------------------------------------------  1150

seq1  TTCAATACCAGAACACTTGTCAGAGGGCTTGATTTCTATTCTATAAAGGA  3441
                                                        
seq2  --------------------------------------------------  1150

seq1  GGGAAGGTAAAGTGGGAACTGTCATGGACAGGATGTCAGAGTCATTCTGA  3491
                                                        
seq2  --------------------------------------------------  1150

seq1  TAACATGAGGTCATGGCCTGGAGCACAATTCTCTCCATTATACTACTCCC  3541
                                                        
seq2  --------------------------------------------------  1150

seq1  AAATAGCCACTGATGTTAAAGAGCCCTGAGAGTGAAATACAGTCATGCCC  3591
                                                        
seq2  --------------------------------------------------  1150

seq1  TTCCCTAAAAGGGCATAGGTTAGACACTCTGTGACTCCTGATGTCCTC  3639
                                                      
seq2  ------------------------------------------------  1150


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