BAC Information

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BAC

Clone NameB6Ng01-040J19
Chromosome5 (Build37)
Map Location 13,991,921 - 14,122,917
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040J19.bB6Ng01-040J19.g
ACCDH867521DH867522
length6621,174
definitionDH867521|Mus musculus domesticus DNA, BAC clone: B6Ng01-040J19, 5' end.DH867522|Mus musculus domesticus DNA, BAC clone: B6Ng01-040J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,991,921 - 13,992,582)(14,121,731 - 14,122,917)
sequence
gaattctttgtttagctctgtaccccattttttaatggagttatttgaat
ttctggagttcagcttcttgagctccttgtatatattggatattagtccc
ctatcagatttaggattggtaaaaattctttcccaatctgttggtgttag
ccaactttctgatctttgcctattttgatgattttggctattttagaaac
cttctatcagtataaagatgtgttgctgttctttctgtgcctgaagtgcc
tgatagcacgtaatgtccccaaaacatatcttacataggtataacagaac
caagcttatgagattcttgctttcttttttttcttttcttttcttttttt
cctttttgaagacagggtttctctgtgtagccctggctgtcctggaactc
actctgtagaccaggctggcctcgaactaagaaatctgcctgcctctgcc
tcccaagttctggaactaaaggtgtgcaccatcactgcctggccttgctt
tcttttttaatccatgtaagtttaatgaaaatgtgtgcatggtgctttca
aagatactttaaaatggtagctcttagtagtcaagttgttgtgtttaata
aaaaagaaggagcccgggatatgtttttatagagccaggcatggtgaggt
gggaggggaggg
gaattcatgaacgagaaacatcgtgaaatacactctgaggactagctcat
tcagcatcgagtgcacagactttggatatggaatagcaaagagaaagcta
gcaccctccaaaaataagctacattttatttctatattatataatgttaa
agtgagaaaaggaaaaaaaactcaattatattttaaatatagttgtgctt
gacatctatttgaggtgaagaattaagcctagaacacatgtcttctttta
acgcaccacaaattattttaattgcaaacttagtcttatttaatagcatc
tgaaattagcactttgttatgtgaggtttgtacatacaatagaacgtggt
gaaaaaaagaactggatcaatcaaaatgcacttgttctgctaaggaagac
attctaaatgtcaccatgtgcccactgctgtgctctggatgagaatatac
tacatacattttcctatcttttaattttcctctgatatggcaatgaaagt
aatatggtgtcttaaccttaccaatattatttttaaaaaatgtatttgac
agacgccaaaatcccttcagtcgctaatttcttcatcgctaatggaaaag
attcctctcattttcttatagcaatactgaagcgaagataaaagttaaac
taataatgtacatgcctttgagaaagagttagtgaggagttcatattttt
gagatataaaaagggaagctccacatcaattacagtctgcaagtctctgc
acatttgctttaatgaactgccattcatattcggctgctctgagtctttg
ttcctggaagaagcccgtgatcgctcatttccaattagtgagccatgtct
ttctgtggtaataggtggccaccacatcgtagcctttgagtttcaggctc
attaaaacagtgatagtaagtcttggctcaaatcaaggctgtgaccccta
caaccatcacatctactttaatctcttcagctctgttccctgacaaatct
tctgaagaacataattgcctccttccgattgcacttccaaatactcgtgt
gcagttactaggaaatcagaacgagaaccacagtgtttatagtttgagcc
aaacagattataatatttacaaagaaattaaaagaattccaagatatatt
tttggtaagaatatggacacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13991921_13992582
seq2: B6Ng01-040J19.b_46_707

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATGGAGTTATTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATGGAGTTATTTGAAT  50

seq1  TTCTGGAGTTCAGCTTCTTGAGCTCCTTGTATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTTCAGCTTCTTGAGCTCCTTGTATATATTGGATATTAGTCCC  100

seq1  CTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGTTAG  150

seq1  CCAACTTTCTGATCTTTGCCTATTTTGATGATTTTGGCTATTTTAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTCTGATCTTTGCCTATTTTGATGATTTTGGCTATTTTAGAAAC  200

seq1  CTTCTATCAGTATAAAGATGTGTTGCTGTTCTTTCTGTGCCTGAAGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCAGTATAAAGATGTGTTGCTGTTCTTTCTGTGCCTGAAGTGCC  250

seq1  TGATAGCACGTAATGTCCCCAAAACATATCTTACATAGGTATAACAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCACGTAATGTCCCCAAAACATATCTTACATAGGTATAACAGAAC  300

seq1  CAAGCTTATGAGATTCTTGCTTTCTTTTTTTTCTTTTCTTTTCTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATGAGATTCTTGCTTTCTTTTTTTTCTTTTCTTTTCTTTTTTT  350

seq1  CCTTTTTGAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  400

seq1  ACTCTGTAGACCAGGCTGGCCTCGAACTAAGAAATCTGCCTGCCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCGAACTAAGAAATCTGCCTGCCTCTGCC  450

seq1  TCCCAAGTTCTGGAACTAAAGGTGTGCACCATCACTGCCTGGCCTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTTCTGGAACTAAAGGTGTGCACCATCACTGCCTGGCCTTGCTT  500

seq1  TCTTTTTTAATCCATGTAAGTTTAATGAAAATGTGTGCATGGTGCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAATCCATGTAAGTTTAATGAAAATGTGTGCATGGTGCTTTCA  550

seq1  AAGATACTTTAAAATGGTAGCTCTTAGTAGTCAAGTTGTTGTGTTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTTAAAATGGTAGCTCTTAGTAGTCAAGTTGTTGTGTTTAATA  600

seq1  AAAAAGAAGGAGCCCGGGATATGTTTTTATAGAGCCAGGCATGGTGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGGAGCCCGGGATATGTTTTTATAGAGCCAGGCATGGTGAGGT  650

seq1  GGGAGGGGAGGG  662
      ||||||||||||
seq2  GGGAGGGGAGGG  662

seq1: chr5_14121731_14122917
seq2: B6Ng01-040J19.g_69_1242 (reverse)

seq1  GTTTGTGTCCTATATCTTTAACAAAAATTATA-CTTGTGAATTCTTGTTA  49
      |||||||||| ||||  ||| |||||| |||| |||| |||||||| |||
seq2  GTTTGTGTCC-ATATTCTTACCAAAAA-TATATCTTG-GAATTCTT-TTA  46

seq1  ATTTTCTTTTGTAAATA-TATAATTCTGTTTTGCTTCAAACTTATAACAC  98
      ||||   |||||||||| ||||| ||||||| || |||||||   |||||
seq2  ATTT--CTTTGTAAATATTATAA-TCTGTTTGGC-TCAAACTATAAACAC  92

seq1  TTGTGGTTCCTCTGATCTGATTTCCCTAGTAACTGCACACGAGTATTTGG  148
       ||||||| ||| | |||||||| ||||||||||||||||||||||||||
seq2  -TGTGGTT-CTC-GTTCTGATTT-CCTAGTAACTGCACACGAGTATTTGG  138

seq1  AAGTGCAATCGGAAGGGGGCAATTATGTTCTTCAGAGGATTTGTCAGGGA  198
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AAGTGCAATCGGAAGGAGGCAATTATGTTCTTCAGAAGATTTGTCAGGGA  188

seq1  ACAGAGCTGAAGGAGATTAAAGTAGATGTGATGGTTGTAGGGGTCACAGC  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTGAA-GAGATTAAAGTAGATGTGATGGTTGTAGGGGTCACAGC  237

seq1  CTTGATTTTGAGCCAAGACTTACTATCACTGTTTTAATTGAGCCTGAAAA  298
      ||||| ||||||||||||||||||||||||||||||| |||||||| |||
seq2  CTTGA-TTTGAGCCAAGACTTACTATCACTGTTTTAA-TGAGCCTG-AAA  284

seq1  CTCAAAGGCTACGATGTGGTGGCCACCTATTACCACAG-AAGACATGGCT  347
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAAAGGCTACGATGTGGTGGCCACCTATTACCACAGAAAGACATGGCT  334

seq1  CACTAATTGGAAATGAGCGATCACGGGCTTCTTCCAGGAACAAAGACTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTGGAAATGAGCGATCACGGGCTTCTTCCAGGAACAAAGACTCA  384

seq1  GAGCAGCCGAATATGAATGGCAGTTCATTAAAGCAAATGTGCAGAGACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCGAATATGAATGGCAGTTCATTAAAGCAAATGTGCAGAGACTT  434

seq1  GCAGACTGTAATTGATGTGGAGCTTCCCTTTTTATATCTCAAAAATATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTAATTGATGTGGAGCTTCCCTTTTTATATCTCAAAAATATGA  484

seq1  ACTCCTCACTAACTCTTTCTCAAAGGCATGTACATTATTAGTTTAACTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCACTAACTCTTTCTCAAAGGCATGTACATTATTAGTTTAACTTT  534

seq1  TATCTTCGCTTCAGTATTGCTATAAGAAAATGAGAGGAATCTTTTCCATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCGCTTCAGTATTGCTATAAGAAAATGAGAGGAATCTTTTCCATT  584

seq1  AGCGATGAAGAAATTAGCGACTGAAGGGATTTTGGCGTCTGTCAAATACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGAAGAAATTAGCGACTGAAGGGATTTTGGCGTCTGTCAAATACA  634

seq1  TTTTTTAAAAATAATATTGGTAAGGTTAAGACACCATATTACTTTCATTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAATAATATTGGTAAGGTTAAGACACCATATTACTTTCATTG  684

seq1  CCATATCAGAGGAAAATTAAAAGATAGGAAAATGTATGTAGTATATTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCAGAGGAAAATTAAAAGATAGGAAAATGTATGTAGTATATTCTC  734

seq1  ATCCAGAGCACAGCAGTGGGCACATGGTGACATTTAGAATGTCTTCCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCACAGCAGTGGGCACATGGTGACATTTAGAATGTCTTCCTTA  784

seq1  GCAGAACAAGTGCATTTTGATTGATCCAGTTCTTTTTTTCACCACGTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACAAGTGCATTTTGATTGATCCAGTTCTTTTTTTCACCACGTTCT  834

seq1  ATTGTATGTACAAACCTCACATAACAAAGTGCTAATTTCAGATGCTATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTACAAACCTCACATAACAAAGTGCTAATTTCAGATGCTATTA  884

seq1  AATAAGACTAAGTTTGCAATTAAAATAATTTGTGGTGCGTTAAAAGAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTAAGTTTGCAATTAAAATAATTTGTGGTGCGTTAAAAGAAGA  934

seq1  CATGTGTTCTAGGCTTAATTCTTCACCTCAAATAGATGTCAAGCACAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCTAGGCTTAATTCTTCACCTCAAATAGATGTCAAGCACAACT  984

seq1  ATATTTAAAATATAATTGAGTTTTTTTTCCTTTTCTCACTTTAACATTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAATATAATTGAGTTTTTTTTCCTTTTCTCACTTTAACATTAT  1034

seq1  ATAATATAGAAATAAAATGTAGCTTATTTTTGGAGGGTGCTAGCTTTCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAGAAATAAAATGTAGCTTATTTTTGGAGGGTGCTAGCTTTCTC  1084

seq1  TTTGCTATTCCATATCCAAAGTCTGTGCACTCGATGCTGAATGAGCTAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTCCATATCCAAAGTCTGTGCACTCGATGCTGAATGAGCTAGT  1134

seq1  CCTCAGAGTGTATTTCACGATGTTTCTCGTTCATGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGTGTATTTCACGATGTTTCTCGTTCATGAATTC  1174