BAC Information

Click to search

BAC

Clone NameB6Ng01-041L15
Chromosome5 (Build37)
Map Location 65,607,924 - 65,744,749
singlet/doubletdoublet
Overlap geneWdr19, Rfc1, Klb
Upstream geneTbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5
Downstream geneRpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041L15.bB6Ng01-041L15.g
ACCDH868304DH868305
length941991
definitionDH868304|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L15, 5' end.DH868305|Mus musculus domesticus DNA, BAC clone: B6Ng01-041L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,607,924 - 65,608,858)(65,744,146 - 65,744,749)
sequence
gaattccttcttctgttgaaatttcccaaacttgatttgatcctaagagg
atctcttcttcagagaatctgcattgtcaatggctacctagcatcaccac
tgggaaaattattccatgaaccactatctattcctcagtaccctggtgta
ctgtctttacagtccatacctcagtgccctactgtactgtctgaactagg
ctgcactgactgaaatactcttggaatatctgcttaggcacagcacacag
ataaaccttccttggtctgtactgtacagacagttggaaatgtgatgtat
ttgtcagctgttgttgtataacaaaatatctcaaaatgtaggagcttgaa
acatcagtgtttcattgttgttgacaaggaatccagatgcagcttcttgg
agtgcctctgcctcagaatctcccacaaggccgtttctaagctcactcac
gtagtggttggtagagttcagctccttgcagatttctgttcctatacaga
ctcactctatccactgtaagtcctgattccctaccatgtggatctctccc
atggagtgtgctggagttgaatgtggtttatcacccaaggtttcgttgtc
tgaagtttggtctctcgtctacatactgtggggacgtaggggaaccttgg
aggagttggagcctagtaggaggtgatggagtgtggacaggaaggaattc
atgtagctctcttgggactcttattttacaattaagcaaaggttgttatg
aaaaggttcttcaccttcacggggactttcctattcacacacacttttgc
cgtgatactagggtagtctttctaaaagacacatgggccctttcatgatg
agttaccaaatttttgtggtccagcttttatgctttatagctttgggagg
tggtaacaaccaagacacttaaactgtgatctttaaaagac
gaattccacatagactaggctggcctcaaattcacaaagaactgtttgga
ttaagccatttagcccacctaaaatctttattctataaaggagaaaacag
agtcaacccataagaaggagcagacctgagggaggagggagggtcctctg
aggaagtgtcctacttgctgaattcattatttctgctcggtcagccagga
aattgctcctttttgcttaaagccaacttgaattcaatttgtcacttgca
accagcagcattctgactaatacaccaccaggttaatatcagtaatattt
cacgaattagcaacacaacaaaacagggagattgaatttgacattggttc
tttgattacaaagatgaagttagagaggctggagagatgactcaacattt
taggaacactggttgttgctcttttcaaagaccctgggttcaattcccag
cacccacaaagtagctcataactctctgtagctccaattctaggggtctg
gggccttcacagacatacatacaagcaaaccaccgatgcacataaaacaa
aagaaataaacctttaaaaaatcctagcgtgttcattgaatggacttata
cactctaggatgggccaaatgttctgtgttagacgttggaagcatgagat
cgaagagccagtgaacaggaccggagagatggctcagcagggggaagtag
ttcccaccaagccgggggacctgcattccatccctgagacccgcgtgaca
gaaagagagaatgactcccaaaagtcaccctccaaactctcacctgtgcc
tcagcataaattaaaaaaatagaaatttaaaaacagacaataaaagaagc
aagcacaaacatagcagcacaacaaaggatgctctggcaactcttagtct
aactgaagagaaaggaaggatcagggctggagagatcactctgtggctaa
gagcactggctgctcttccaaactcgcactgtctgtaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65607924_65608858
seq2: B6Ng01-041L15.b_47_987

seq1  GAATTCCTTCTTCTGTTGAAATTTCCCAAACTTGATTTGATCCTAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTCTGTTGAAATTTCCCAAACTTGATTTGATCCTAAGAGG  50

seq1  ATCTCTTCTTCAGAGAATCTGCATTGTCAATGGCTACCTAGCATCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTTCAGAGAATCTGCATTGTCAATGGCTACCTAGCATCACCAC  100

seq1  TGGGAAAATTATTCCATGAACCACTATCTATTCCTCAGTACCCTGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATTATTCCATGAACCACTATCTATTCCTCAGTACCCTGGTGTA  150

seq1  CTGTCTTTACAGTCCATACCTCAGTGCCCTACTGTACTGTCTGAACTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTACAGTCCATACCTCAGTGCCCTACTGTACTGTCTGAACTAGG  200

seq1  CTGCACTGACTGAAATACTCTTGGAATATCTGCTTAGGCACAGCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGACTGAAATACTCTTGGAATATCTGCTTAGGCACAGCACACAG  250

seq1  ATAAACCTTCCTTGGTCTGTACTGTACAGACAGTTGGAAATGTGATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTTCCTTGGTCTGTACTGTACAGACAGTTGGAAATGTGATGTAT  300

seq1  TTGTCAGCTGTTGTTGTATAACAAAATATCTCAAAATGTAGGAGCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCTGTTGTTGTATAACAAAATATCTCAAAATGTAGGAGCTTGAA  350

seq1  ACATCAGTGTTTCATTGTTGTTGACAAGGAATCCAGATGCAGCTTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGTTTCATTGTTGTTGACAAGGAATCCAGATGCAGCTTCTTGG  400

seq1  AGTGCCTCTGCCTCAGAATCTCCCACAAGGCCGTTTCTAAGCTCACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCTGCCTCAGAATCTCCCACAAGGCCGTTTCTAAGCTCACTCAC  450

seq1  GTAGTGGTTGGTAGAGTTCAGCTCCTTGCAGATTTCTGTTCCTATACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTTGGTAGAGTTCAGCTCCTTGCAGATTTCTGTTCCTATACAGA  500

seq1  CTCACTCTATCCACTGTAAGTCCTGATTCCCTACCATGTGGATCTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTATCCACTGTAAGTCCTGATTCCCTACCATGTGGATCTCTCCC  550

seq1  ATGGAGTGTGCTGGAGTTGAATGTGGTTTATCACCCAAGGTTTCGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTGCTGGAGTTGAATGTGGTTTATCACCCAAGGTTTCGTTGTC  600

seq1  TGAAGTTTGGTCTCTCGTCTACATACTGTGGGGACGTAGGGGAACCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTGGTCTCTCGTCTACATACTGTGGGGACGTAGGGGAACCTTGG  650

seq1  AGGAGTTGGAGCCTAGTAGGAGGTGATGGAGTGTGGACAGGAAGGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGAGCCTAGTAGGAGGTGATGGAGTGTGGACAGGAAGGAATTC  700

seq1  ATGTAGCTCTCTTGGGACTCTTA-TTTACAATTAAGCAAAGGTTGTTATG  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGTAGCTCTCTTGGGACTCTTATTTTACAATTAAGCAAAGGTTGTTATG  750

seq1  -AAAGGTTCTTCACCTTCAC-GGGACTTTCCTATTCACACACACTCCTGC  797
       ||||||||||||||||||| ||||||||||||||||||||||||  |||
seq2  AAAAGGTTCTTCACCTTCACGGGGACTTTCCTATTCACACACACTTTTGC  800

seq1  CGTGATACTA-GGTAGTC-TTCTAAAAGACACATGG--CCTTTCATGATG  843
      |||||||||| ||||||| |||||||||||||||||  ||||||||||||
seq2  CGTGATACTAGGGTAGTCTTTCTAAAAGACACATGGGCCCTTTCATGATG  850

seq1  AGTTACCAAA-TTTTGTGGTCCAGCTTTTATGCTTTATAGCTTTGGGAGG  892
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAAATTTTTGTGGTCCAGCTTTTATGCTTTATAGCTTTGGGAGG  900

seq1  TGGTAACAACCAGTACACTTTAGACTGTGAATCTTTAAAAGAC  935
      ||||||||||||  |||| ||| |||||| |||||||||||||
seq2  TGGTAACAACCAAGACAC-TTAAACTGTG-ATCTTTAAAAGAC  941

seq1: chr5_65744146_65744749
seq2: B6Ng01-041L15.g_70_673 (reverse)

seq1  AGTGTATAAGTCCATTCAATGAACACGCTAGGATTTTTTAAAGGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAAGTCCATTCAATGAACACGCTAGGATTTTTTAAAGGTTTATT  50

seq1  TCTTTTGTTTTATGTGCATCGGTGGTTTGCTTGTATGTATGTCTGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTATGTGCATCGGTGGTTTGCTTGTATGTATGTCTGTGAAG  100

seq1  GCCCCAGACCCCTAGAATTGGAGCTACAGAGAGTTATGAGCTACTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGACCCCTAGAATTGGAGCTACAGAGAGTTATGAGCTACTTTGTG  150

seq1  GGTGCTGGGAATTGAACCCAGGGTCTTTGAAAAGAGCAACAACCAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGAATTGAACCCAGGGTCTTTGAAAAGAGCAACAACCAGTGTT  200

seq1  CCTAAAATGTTGAGTCATCTCTCCAGCCTCTCTAACTTCATCTTTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATGTTGAGTCATCTCTCCAGCCTCTCTAACTTCATCTTTGTAAT  250

seq1  CAAAGAACCAATGTCAAATTCAATCTCCCTGTTTTGTTGTGTTGCTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACCAATGTCAAATTCAATCTCCCTGTTTTGTTGTGTTGCTAATT  300

seq1  CGTGAAATATTACTGATATTAACCTGGTGGTGTATTAGTCAGAATGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAATATTACTGATATTAACCTGGTGGTGTATTAGTCAGAATGCTGC  350

seq1  TGGTTGCAAGTGACAAATTGAATTCAAGTTGGCTTTAAGCAAAAAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAAGTGACAAATTGAATTCAAGTTGGCTTTAAGCAAAAAGGAGC  400

seq1  AATTTCCTGGCTGACCGAGCAGAAATAATGAATTCAGCAAGTAGGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGGCTGACCGAGCAGAAATAATGAATTCAGCAAGTAGGACACT  450

seq1  TCCTCAGAGGACCCTCCCTCCTCCCTCAGGTCTGCTCCTTCTTATGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAGGACCCTCCCTCCTCCCTCAGGTCTGCTCCTTCTTATGGGTT  500

seq1  GACTCTGTTTTCTCCTTTATAGAATAAAGATTTTAGGTGGGCTAAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTTTTCTCCTTTATAGAATAAAGATTTTAGGTGGGCTAAATGGC  550

seq1  TTAATCCAAACAGTTCTTTGTGAATTTGAGGCCAGCCTAGTCTATGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAAACAGTTCTTTGTGAATTTGAGGCCAGCCTAGTCTATGTGGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604