BAC Information

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BAC

Clone NameB6Ng01-042A04
Chromosome1 (Build37)5 (Build37)
Map Location 114,218,225 - 114,219,38469,189,353 - 69,189,445
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897
Downstream geneLOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042A04.bB6Ng01-042A04.g
ACCDH868509DH868510
length1,14692
definitionDH868509|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A04, 5' end.DH868510|Mus musculus domesticus DNA, BAC clone: B6Ng01-042A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,218,225 - 114,219,384)(69,189,353 - 69,189,445)
sequence
gaattctgcagtaaatccatctggccctaggcttttgtagatggaagctt
tttaatgacttcttttattttcttatgggatatgtacctgtttagatagt
ttacctgctcttgatttaatttgatttaactctagaaaaccaaccatttc
atctagattttccacttttgttgagtataggcttttgtagaaggatctga
tgaatttttgcatatccatgtaaattcataagggtctttattactagctc
aggagcatgatctcttactatccccattgcaacctgtcacagttagtcag
ggacctagggtatttgttgtagtcacagcaaactttgggaatttttatat
gggtcagcaaattaatattatttaaaaaaatgtatttctggcatattatg
caggaggcctgaaaatgggcaaaatcatctgataaacaggatggtctgat
tgtccattctctgcaggatgtcttgggtttttctccacgtaccatgatct
tgctattatatcctggctgaggctgttgggaagagggtatcataggataa
ttgctcaggtaaactttgtgattttcttccttgaattggaatttagtccc
taggctcttacaaaacggggttgcttcaaaaagagagttggttacaggtt
ggattcccaaaaagacttctgagaacaaacagacaaataaaagatgagag
ggagtaacgaaaattttctgaaaaattaggtcattgtaatattcaatata
aatgacaagatgctcataaaggatggagactgaggttgtcacgttcccaa
ataattggaaaggttttgtaaaggaggagccttacatctcaggaatatca
gaatttctcctgcgttacttagccctcatctatgaagaatttcaaaattt
taaaaatgaaataaaatgaaacaaattccaaaacaaattgaactagccag
aatgtaaattctgaaatttgtactgtaaaagttttacttctatggtattt
tctctacctgattcttattgagattcagagactttcatcatttaaattgt
acttgtatcttttatcatcttcagaaatatttttccccttcatcatatga
gacagcaagcagttactgacctcattaagcctctcttactaatgtt
cagggccaaaaagtgggagtgggtgggtaggggagtcgggggagggttta
tgggacttttgggatagcttggaaatgtaaatgatgaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114218225_114219384
seq2: B6Ng01-042A04.b_44_1189 (reverse)

seq1  AACACTAGTAAGAGAGGCTTTTAAATGAGGTCAGTAAAACTGCCTGCCTG  50
      |||| |||||||||||||||   ||||||||||||  |||||| || |||
seq2  AACATTAGTAAGAGAGGCTT---AATGAGGTCAGT--AACTGCTTG-CTG  44

seq1  TCCTTCATTATTGAATGAAGGGG-AAAATA-TTCTGAAGATGATAAAGAT  98
      ||  ||| |||   ||||||||| |||||| ||||||||||||||||   
seq2  TC--TCA-TAT--GATGAAGGGGAAAAATATTTCTGAAGATGATAAAAGA  89

seq1  TACAAGGTACAATTTAAATGATGAAAGTCTCTGAATCTCAATAAGGAATT  148
      ||||| |||||||||||||||||||||||||||||||||||||||  | |
seq2  TACAA-GTACAATTTAAATGATGAAAGTCTCTGAATCTCAATAAG--AAT  136

seq1  CAGGTAGAGAAAATACCATAGAAGTAAAACTTTTTACAGTACAAATTTCA  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGGTAGAGAAAATACCATAGAAGTAAAAC-TTTTACAGTACAAATTTCA  185

seq1  GAATTTACATTCTGGCTAGTTCAATTTGTTTTGGAATTTGTTTCATTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACATTCTGGCTAGTTCAATTTGTTTTGGAATTTGTTTCATTTTA  235

seq1  TTTCAATTTTTAAAATTTTGAAATTCTTCATAGATGAGGGCTAAGTAACG  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-ATTTTTAAAATTTTGAAATTCTTCATAGATGAGGGCTAAGTAACG  284

seq1  CAGGAGAAATTCTGATATTCCTGAGATGTAAGGCTCCTCCTTTACAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAATTCTGATATTCCTGAGATGTAAGGCTCCTCCTTTACAAAAC  334

seq1  CTTTCCAATTATTTGGGAACGTGACAACCTCAGTCTCCATCCTTTATGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATTATTTGGGAACGTGACAACCTCAGTCTCCATCCTTTATGAG  384

seq1  CATCTTGTCATTTATATTGAATATTACAATGACCTAATTTTTCAGAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCATTTATATTGAATATTACAATGACCTAATTTTTCAGAAAAT  434

seq1  TTTCGTTACTCCCTCTCATCTTTTATTTGTCTGTTTGTTCTCAGAAGTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTACTCCCTCTCATCTTTTATTTGTCTGTTTGTTCTCAGAAGTCT  484

seq1  TTTTGGGAATCCAACCTGTAACCAACTCTCTTTTTGAAGCAACCCCGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAATCCAACCTGTAACCAACTCTCTTTTTGAAGCAACCCCGTTT  534

seq1  TGTAAGAGCCTAGGGACTAAATTCCAATTCAAGGAAGAAAATCACAAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGCCTAGGGACTAAATTCCAATTCAAGGAAGAAAATCACAAAGT  584

seq1  TTACCTGAGCAATTATCCTATGATACCCTCTTCCCAACAGCCTCAGCCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGAGCAATTATCCTATGATACCCTCTTCCCAACAGCCTCAGCCAG  634

seq1  GATATAATAGCAAGATCATGGTACGTGGAGAAAAACCCAAGACATCCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATAGCAAGATCATGGTACGTGGAGAAAAACCCAAGACATCCTGC  684

seq1  AGAGAATGGACAATCAGACCATCCTGTTTATCAGATGATTTTGCCCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGACAATCAGACCATCCTGTTTATCAGATGATTTTGCCCATTT  734

seq1  TCAGGCCTCCTGCATAATATGCCAGAAATACATTTTTTTAAATAATATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCCTGCATAATATGCCAGAAATACATTTTTTTAAATAATATTA  784

seq1  ATTTGCTGACCCATATAAAAATTCCCAAAGTTTGCTGTGACTACAACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGACCCATATAAAAATTCCCAAAGTTTGCTGTGACTACAACAAA  834

seq1  TACCCTAGGTCCCTGACTAACTGTGACAGGTTGCAATGGGGATAGTAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAGGTCCCTGACTAACTGTGACAGGTTGCAATGGGGATAGTAAGA  884

seq1  GATCATGCTCCTGAGCTAGTAATAAAGACCCTTATGAATTTACATGGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGCTCCTGAGCTAGTAATAAAGACCCTTATGAATTTACATGGATA  934

seq1  TGCAAAAATTCATCAGATCCTTCTACAAAAGCCTATACTCAACAAAAGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAATTCATCAGATCCTTCTACAAAAGCCTATACTCAACAAAAGTG  984

seq1  GAAAATCTAGATGAAATGGTTGGTTTTCTAGAGTTAAATCAAATTAAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAGATGAAATGGTTGGTTTTCTAGAGTTAAATCAAATTAAATC  1034

seq1  AAGAGCAGGTAAACTATCTAAACAGGTACATATCCCATAAGAAAATAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGTAAACTATCTAAACAGGTACATATCCCATAAGAAAATAAAA  1084

seq1  GAAGTCATTAAAAAGCTTCCATCTACAAAAGCCTAGGGCCAGATGGATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATTAAAAAGCTTCCATCTACAAAAGCCTAGGGCCAGATGGATTT  1134

seq1  ACTGCAGAATTC  1160
      ||||||||||||
seq2  ACTGCAGAATTC  1146

seq1: chr5_69189353_69189445
seq2: B6Ng01-042A04.g_71_162 (reverse)

seq1  TATTTTCCTCATTTACATTTCCAATGCTAT-CCAAAAGTCCCCCATACCC  49
      ||||||| |||||||||||||||| ||||| |||||||||||  | ||||
seq2  TATTTTCATCATTTACATTTCCAA-GCTATCCCAAAAGTCCCATAAACCC  49

seq1  ACCCCCACAATCCCCTAACCACCCACTCCCCCTTTTTGGCCCTG  93
       |||||  | ||||||| |||||||||||| |||||||||||||
seq2  TCCCCC-GACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTG  92