BAC Information

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BAC

Clone NameB6Ng01-042D08
Chromosome5 (Build37)
Map Location 45,963,704 - 46,121,786
singlet/doubletdoublet
Overlap gene9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Upstream geneLdb2, LOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042D08.bB6Ng01-042D08.g
ACCDH868651DH868652
length2991,104
definitionDH868651|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D08, 5' end.DH868652|Mus musculus domesticus DNA, BAC clone: B6Ng01-042D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,121,488 - 46,121,786)(45,963,704 - 45,964,819)
sequence
atgtatctgtcttgtgttgtacatgtactgtaattttgttcctactttgt
gttgttatatatctaaatctgattgtatgaattttaattgttcagttaac
gtgtttctaggttgtaatttgtagtaaagcacttcaatgcttttgcactt
aaatttacaacactgtcggtgtgtggttaatttactcattcagtaaagga
aaagaaaagtaaacttgactatactgagttctttgagtccttatgaggag
ggtttttttgttttgtttttttggttttggttttggtttgtttggttta
gaattcttgaaagtacttcagggttattaggtgtgtagttcagtaatttg
gctcttgccttgcccctcacgccaaagccataggtttgctccctagaggt
tgtggcgcatgggcagggctgaggagcagcttcaaggctccctgaaggca
taacataggtccctttaaggtttaatggacagcaaggaaagagacctcta
tataatgttggtctaaccaggtctcttcaatcttgtcgttagccccttcc
attagtaccattaagaacctgtgatttaagttcatttaaaaatcaaaaga
aaaatctttagcttgggttacattgatctatcaatgcagtcatacaattt
gaatatacttgttataagagaaggggcctgggaaggcaagggtgcctcgg
acccacaaaggtgacgatgcatcttagagtaaaaggacaggaagagtcac
caacctggcagtcacttagctccagagtcagcagtggcctcctgcttcct
gcctttatgcaagatcctaaaggcctctttgtctaagaccccataaatca
gactctctgttccttgcagctaaatttatgcgccatctcccctccccgca
gacagccttcctgcctggttgcatgccctttactttgtgcagaggacaca
gggaggtggtgaacctccggatcccatttagccagaaactcccagaggtc
acaacctccattcccaagcaatgagttttaaagatttacctcaagtagag
aattctggagcttcgtactgagggcagcttttctcctctttgcagctgct
gtatttctctttctgattttgtcttcacctcttctcaattgagcttccac
ttcctaagtgaggagtagaagtattaccgcactaagtaggaaaacagggc
acctatgcattcacacctgccttattcctgaaagggggtcaaagaaacta
atagaataaactactgtagacacatgaattcaagtacatagcctgtcaga
gaaacagtggttaaattccttgttatttagcctgagccatacagatgggt
aggatgtgcagtagagactttactcgagttaaaccaagacgacaacaaac
cacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46121488_46121786
seq2: B6Ng01-042D08.b_52_350 (reverse)

seq1  TAAACCAAACAAACCAAAACCAAAACCAAAAAAACAAAACAAAAAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAACAAACCAAAACCAAAACCAAAAAAACAAAACAAAAAAACCC  50

seq1  TCCTCATAAGGACTCAAAGAACTCAGTATAGTCAAGTTTACTTTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAAGGACTCAAAGAACTCAGTATAGTCAAGTTTACTTTTCTTTT  100

seq1  CCTTTACTGAATGAGTAAATTAACCACACACCGACAGTGTTGTAAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTGAATGAGTAAATTAACCACACACCGACAGTGTTGTAAATTTA  150

seq1  AGTGCAAAAGCATTGAAGTGCTTTACTACAAATTACAACCTAGAAACACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAAGCATTGAAGTGCTTTACTACAAATTACAACCTAGAAACACG  200

seq1  TTAACTGAACAATTAAAATTCATACAATCAGATTTAGATATATAACAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAACAATTAAAATTCATACAATCAGATTTAGATATATAACAACA  250

seq1  CAAAGTAGGAACAAAATTACAGTACATGTACAACACAAGACAGATACAT  299
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGGAACAAAATTACAGTACATGTACAACACAAGACAGATACAT  299

seq1: chr5_45963704_45964819
seq2: B6Ng01-042D08.g_67_1170

seq1  GAATTCTTGAAAGTACTTCAGGGTTATTAGGTGTGTAGTTCAGTAATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAGTACTTCAGGGTTATTAGGTGTGTAGTTCAGTAATTTG  50

seq1  GCTCTTGCCTTGCCCCTCACGCCAAAGCCATAGGTTTGCTCCCTAGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCCTTGCCCCTCACGCCAAAGCCATAGGTTTGCTCCCTAGAGGT  100

seq1  TGTGGCGCATGGGCAGGGCTGAGGAGCAGCTTCAAGGCTCCCTGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCGCATGGGCAGGGCTGAGGAGCAGCTTCAAGGCTCCCTGAAGGCA  150

seq1  TAACATAGGTCCCTTTAAGGTTTAATGGACAGCAAGGAAAGAGACCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGGTCCCTTTAAGGTTTAATGGACAGCAAGGAAAGAGACCTCTA  200

seq1  TATAATGTTGGTCTAACCAGGTCTCTTCAATCTTGTCGTTAGCCCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTTGGTCTAACCAGGTCTCTTCAATCTTGTCGTTAGCCCCTTCC  250

seq1  ATTAGTACCATTAAGAACCTGTGATTTAAGTTCATTTAAAAATCAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTACCATTAAGAACCTGTGATTTAAGTTCATTTAAAAATCAAAAGA  300

seq1  AAAATCTTTAGCTTGGGTTACATTGATCTATCAATGCAGTCATACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTAGCTTGGGTTACATTGATCTATCAATGCAGTCATACAATTT  350

seq1  GAATATACTTGTTATAAGAGAAGGGGCCTGGGAAGGCAAGGGTGCCTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTTGTTATAAGAGAAGGGGCCTGGGAAGGCAAGGGTGCCTCGG  400

seq1  ACCCACAAAGGTGACGATGCATCTTAGAGTAAAAGGACAGGAAGAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAAAGGTGACGATGCATCTTAGAGTAAAAGGACAGGAAGAGTCAC  450

seq1  CAACCTGGCAGTCACTTAGCTCCAGAGTCAGCAGTGGCCTCCTGCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCAGTCACTTAGCTCCAGAGTCAGCAGTGGCCTCCTGCTTCCT  500

seq1  GCCTTTATGCAAGATCCTAAAGGCCTCTTTGTCTAAGACCCCATAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGCAAGATCCTAAAGGCCTCTTTGTCTAAGACCCCATAAATCA  550

seq1  GACTCTCTGTTCCTTGCAGCTAAATTTATGCGCCATCTCCCCTCCCCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTGTTCCTTGCAGCTAAATTTATGCGCCATCTCCCCTCCCCGCA  600

seq1  GACAGCCTTCCTGCCTGGTTGCATGCCCTTTACTTTGTGCAGAGGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTTCCTGCCTGGTTGCATGCCCTTTACTTTGTGCAGAGGACACA  650

seq1  GGGAGGTGGTGAACCTCCGGATCCCATTTAGCCAGAAACTCCCAGAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGTGAACCTCCGGATCCCATTTAGCCAGAAACTCCCAGAGGTC  700

seq1  ACAACCTCCATTCCCAAGCAATGAGTTTTAAAGATTTACCTCAAGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCCATTCCCAAGCAATGAGTTTTAAAGATTTACCTCAAGTAGAG  750

seq1  AATTCTGGAGCTTCGTACTGAGGGCAGC-TTTCTCCTC-TTGCAGCTGCT  798
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AATTCTGGAGCTTCGTACTGAGGGCAGCTTTTCTCCTCTTTGCAGCTGCT  800

seq1  GTATTTCTCTTTCTGATTTTGTCTTCACCTCTTC-CAATTGAGCTTCCAC  847
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTTCTCTTTCTGATTTTGTCTTCACCTCTTCTCAATTGAGCTTCCAC  850

seq1  TTCCTAAGTGAGGAGTAGAAGTATTAGCCGCACTAGGTAGGAAAACAGGC  897
      |||||||||||||||||||||||||| |||||||| ||||||||||||| 
seq2  TTCCTAAGTGAGGAGTAGAAGTATTA-CCGCACTAAGTAGGAAAACAGGG  899

seq1  CACCTATGCATTCACACCTTGCCTTATTCCTG-AAGGGGGTCAAAGAAAC  946
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  CACCTATGCATTCACACC-TGCCTTATTCCTGAAAGGGGGTCAAAGAAAC  948

seq1  TAATAGAATAAACTACTGTAAGAACACATGAATTCAAAGTACATAGCCAG  996
      ||||||||||||||||||||   |||||||||||| |||||||||||| |
seq2  TAATAGAATAAACTACTGTA--GACACATGAATTC-AAGTACATAGCCTG  995

seq1  TCAAGAGAAAACAAGTGTTAAA-TCCATGTTATATAGCCTGGAGCACATA  1045
      || |||| |||||   |||||| ||| |||||| |||||| |||| ||||
seq2  TC-AGAG-AAACAGTGGTTAAATTCCTTGTTATTTAGCCT-GAGC-CATA  1041

seq1  CAGATGGGGTAGGATGTGGCAGGTAGAGACTTTACTCGAGTAAAAACCAA  1095
      ||||| ||||||||||| ||| |||||||||||||||||||  |||||||
seq2  CAGAT-GGGTAGGATGT-GCA-GTAGAGACTTTACTCGAGT-TAAACCAA  1087

seq1  GACAAACCAACAAAAACCACC  1116
      ||| |  ||||  ||||||||
seq2  GACGA--CAAC--AAACCACC  1104