BAC Information

Click to search

BAC

Clone NameB6Ng01-042H16
Chromosome5 (Build37)
Map Location 78,461,409 - 78,462,560
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042H16.bB6Ng01-042H16.g
ACCDH868846DH868847
length1,1081,140
definitionDH868846|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H16, 5' end.DH868847|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
actcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccggttgtctggagt
cgaagatgtcgccacctcagaagctctgtggctctcgccaggaaggtggc
cggttgtctggagatgaagatggcgccgccccagaagctctgcgactctt
gcctgtcccagaacggctggcctctgtattccacacggtctcccgtgcag
cctgccctccgcagagtcctggagccaagaaggctcccgccggcgcctgt
gacacaaacctctcagccgggcagacccctgtgctctcaccaggaaggtg
gccggctgtctggagctgaagatggcgccgcctcagaagctctgtggctc
tcgccaggaagttgcagttgtctggagatgaagatggtgccgccccagaa
gctctgtgactcctcgcccgtccagaaatggctgcctctgtatcacaaca
gtcttccgtgcagctgcctccgcaagagtcccggagctagagatcccgcg
ggctgtgacccaacctctcagcggcagaccctgtgcctccacagagtgcg
ctggagtcatttctgatctgagaccagctccatattcagactgaaatgtg
agctgcttgccctgccatagacttgactgactcctctgccttggaagtga
gattgtgccgaatacgtatgtatgaagctgtacagagctctaactctggg
ggcgtgct
gaattcacatctagtctgatttatcaaaccgaaaatgaactgcatcaaaa
ttagcatttagctgagatccctgaacagtctattaaaacactaacttttg
agtcatttaaaaattcaagctaatgtcctgtatttggctcaggattttcc
ttcctattgcttactaccattcttattatgtttcaatgaattttactcct
gactgttaaccccgatgtggtattacttttacattttgtttttcctactc
tttgaatagattggctttggagtgtgcccaattcctttatttacctctta
atcctttcatgtcactctggaagtattgcttcaagaggaatccctgcaga
ggtggcatttcaaacagcctatggggattagcttttgattttttttcagc
atgcaaacccaatttgaggaattatctcctcaggcataaggatgacagtt
ttggaaatgtcactcagaaaggaatatgaaatagtccagctcctttttac
aaataattcggtggagagcaaaataccaactccatcaactagtcagtggg
cggacagacctctgcaaatgcctgcaaaaccctctgctagctgctaatct
tttctttgtaatttcactgacataagcaataaaccctgtaattatattgc
tctaatcaagaacactgacaatacaagaatatcaatcacagtactcatat
gccaacgcagtcaggttcagagtctagttttggtaccatttatagtttta
gttcaaacctagctaaaagcagctgatagatgtgagttgactgaattgcc
tgtggaacaactatttctctgggctatcttgaatatgctttccagaatgc
atcattcataaagctaatttcttgcattgatacttgagcatgtgcagttc
cttcagtcatagtttatacagcaatacatccccagcactgggcacttcct
gagattatggccagctggggttaatgtctgtaagagagctaaaggcatca
attccttccttccagtcattaattcttgagagatgacagctttttcatca
ttatcatttgagtgcttctttgttttgactttatttgaggatgtggcacc
aaaggaattattccgaatggaggcttgcgagagatgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78461409_78462560
seq2: B6Ng01-042H16.g_64_1203

seq1  GAATTCACATCTAGTCTGATTTATCAAACCGAAAATGAACTGCATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTAGTCTGATTTATCAAACCGAAAATGAACTGCATCAAAA  50

seq1  TTAGCATTTAGCTGAGATCCCTGAACAGTCTATTAAAACACTAACTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTAGCTGAGATCCCTGAACAGTCTATTAAAACACTAACTTTTG  100

seq1  AGTCATTTAAAAATTCAAGCTAATGTCCTGTATTTGGCTCAGGATTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTAAAAATTCAAGCTAATGTCCTGTATTTGGCTCAGGATTTTCC  150

seq1  TTCCTATTGCTTACTACCATTCTTATTATGTTTCAATGAATTTTACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGCTTACTACCATTCTTATTATGTTTCAATGAATTTTACTCCT  200

seq1  GACTGTTAACCCCGATGTGGTATTACTTTTACATTTTGTTTTTCCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTAACCCCGATGTGGTATTACTTTTACATTTTGTTTTTCCTACTC  250

seq1  TTTGAATAGATTGGCTTTGGAGTGTGCCCAATTCCTTTATTTACCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAGATTGGCTTTGGAGTGTGCCCAATTCCTTTATTTACCTCTTA  300

seq1  ATCCTTTCATGTCACTCTGGAAGTATTGCTTCAAGAGGAATCCCTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCATGTCACTCTGGAAGTATTGCTTCAAGAGGAATCCCTGCAGA  350

seq1  GGTGGCATTTCAAACAGCCTATGGGGATTAGCTTTTGATTTTTTTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATTTCAAACAGCCTATGGGGATTAGCTTTTGATTTTTTTTCAGC  400

seq1  ATGCAAACCCAATTTGAGGAATTATCTCCTCAGGCATAAGGATGACAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACCCAATTTGAGGAATTATCTCCTCAGGCATAAGGATGACAGTT  450

seq1  TTGGAAATGTCACTCAGAAAGGAATATGAAATAGTCCAGCTCCTTTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGTCACTCAGAAAGGAATATGAAATAGTCCAGCTCCTTTTTAC  500

seq1  AAATAATTCGGTGGAGAGCAAAATACCAACTCCATCAACTAGTCAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCGGTGGAGAGCAAAATACCAACTCCATCAACTAGTCAGTGGG  550

seq1  CGGACAGACCTCTGCAAATGCCTGCAAAACCCTCTGCTAGCTGCTAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAGACCTCTGCAAATGCCTGCAAAACCCTCTGCTAGCTGCTAATCT  600

seq1  TTTCTTTGTAATTTCACTGACATAAGCAATAAACCCTGTAATTATATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTAATTTCACTGACATAAGCAATAAACCCTGTAATTATATTGC  650

seq1  TCTAATCAAGAACACTGACAATACAAGAATATCAATCACAGTACTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAAGAACACTGACAATACAAGAATATCAATCACAGTACTCATAT  700

seq1  GCCAACGCAGTCAGGTTCAGAGTCTAGTTTTGGTACCATTTATAGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGCAGTCAGGTTCAGAGTCTAGTTTTGGTACCATTTATAGTTTTA  750

seq1  GTTCAAACCTAGCTAAAAGCAGCTGATAGATGTGAGTTGACTGAATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACCTAGCTAAAAGCAGCTGATAGATGTGAGTTGACTGAATTGCC  800

seq1  TGTGGAACAACTATTTCTCTGGGCTATCTTGAATATGCTTTCCAGAATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACAACTATTTCTCTGGGCTATCTTGAATATGCTTTCCAGAATGC  850

seq1  ATCATTCATTAAGCTAAATTTCTTGCATTGATACTTGAGCATGTGCAGTT  900
      ||||||||| ||||| |||||||||||||||||||||||||||||||| |
seq2  ATCATTCATAAAGCT-AATTTCTTGCATTGATACTTGAGCATGTGCAG-T  898

seq1  TCCTTCAGTCATAGTTTATAACAGCAATAACATCCCCAGCACTGGGCACT  950
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TCCTTCAGTCATAGTTTAT-ACAGCAAT-ACATCCCCAGCACTGGGCACT  946

seq1  TCCTGAGGATTAATGGCCAGCTGGGGTTAATGTCTGTAAGAAGAGCCAAA  1000
      |||||| |||| |||||||||||||||||||||||||||| ||||| |||
seq2  TCCTGA-GATT-ATGGCCAGCTGGGGTTAATGTCTGTAAG-AGAGCTAAA  993

seq1  GGCCATCAATTCCTTCCTTCCAGTCATTAATTCTTGAGAGATGACCAGCT  1050
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GG-CATCAATTCCTTCCTTCCAGTCATTAATTCTTGAGAGATGA-CAGCT  1041

seq1  TTTTCATCATTATCATTTGAGTGCTTCTTTGTCTGACCTTTATATGAAGT  1100
      |||||||||||||||||||||||||||||||| |   |||||| |||   
seq2  TTTTCATCATTATCATTTGAGTGCTTCTTTGTTTTGACTTTATTTGA--G  1089

seq1  GATGTGGCACCAAAGGAATTAATCCCGACATGGAGGC-TGCAGAAGATGC  1149
      |||||||||||||||||||| || |||| |||||||| |||   ||||||
seq2  GATGTGGCACCAAAGGAATT-ATTCCGA-ATGGAGGCTTGCGAGAGATGC  1137

seq1  ATC  1152
      |||
seq2  ATC  1140