BAC Information

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BAC

Clone NameB6Ng01-042L06
Chromosome5 (Build37)
Map Location 82,652,017 - 82,653,309
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L06.bB6Ng01-042L06.g
ACCDH868995DH868996
length1,2701,222
definitionDH868995|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L06, 5' end.DH868996|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattgtagcatgagaatatagaaagcacagagagttcctttagt
gaaatggctatagcactattaaattagttgatctagaaggaaaataatta
aagaaattaatgtcaacgtcacattttcaaactcaacaatcagttctcct
acattatcaggcaaaccgtttctgaatatattttcaatatttacatgcca
ttaggatattctagagatgcaggatctgatatctactctcttttcctata
cttatgtagatgaaatatgtggaaaattattttagtgcaagctgcttttg
agcaaactaaatttctgccttgggtttccagctcctccaggggcagcgag
ccaatagccttgtaaattttcatagatggtggatacgtcattgattttga
atgcaccttacagttgacttgaaatcattggtgctatttatcaagacctg
cagataaaaaaaattaaacccacttttttttatttttggtgagacttatt
ttaactgtttcataatgcctaacatagaatgaaagaaaaggggcaagtga
gaaaaaattgtatttctcacaatatcagtaaatcctagcccttaatatct
tgtctaactagattacttccatttttagataaatgaaagacaccaaagca
acatgataaaaactgtgtattgtgtaaaatatgtattaatcctgtaaaat
atcttgaatggtttgatatatgaagggacaatgcttgtgacattctaaaa
tcaacaacggtctttatttcatgctcacctaattattctgacatgagcct
aactgctgtgttctgctccatgctaatgagtgtgtggcaaacaagatgag
tgtcatctgcatagacactccataactaattcttagctccacagagagat
taagtggtgaaagttagcaattacattccagtgacaatgttttcctctgc
aatcgattagtgagtgcaatgttcctctagtagacaggctataaacagtt
ccacccattacatttctttcagagcctctgattatcatgtctgtttctgg
gtacatgtctgtactcccctttatctgaatatcctcttatttggaaatat
tcttgaatattcggcaagtctgtttttccagaattggcttactgacagac
cccagtctttccctgaaatattatcactgagttagtgcgagaatcagact
ggactttaattctaagatttccttatgaaataactgttgtcatctcagca
taagatctggagtgaactac
gaattcattctgaattgctataaggaggctggaccaggttggaggaatag
agaaacatatgaagtaagttaatgagcatgtagcctcccatactttctgt
ctccagctagtttatcttttagctcagatgttttttcagagttaaaaaaa
aataaaaaataaaaagaacaagagatctagcacatagcacatatggatct
aatgagaaatcatcaactgtatcaagaaattaatatttaattaagaacac
tctgccagaaatcagaatattggcattttccatgatgaagtgaaattcaa
caaacatgctgaactctcagtcccagtacttctgacggtgactgtgttgg
gaacaaggaaggtctttagaagtgtgatcaaaatgagatgaagtcatgct
tactgcgctaaagtgtgtaatatttaagtaagactgaagccctgatgaaa
agagaaagaagtcggtaatgcacaaagcaggtcatcctgggaagacaaag
accaaagtgctgcctcttcagaacttaggagagggatgaggaagagtctc
ctcaaaaacccacaaagaggaactaaccctgtggatatttttcattctga
cttctattacccaaaattatgacagaaaaacccaagtgttagtggatatt
agtcccaaacctaggatacccaagatataagatacaatttgctaaacaca
tgaaactcaagaagaatgaagactgaagtgtggacactatgcccctcctt
agaattgggaacaaaacacccatggaaggagtttacaaagacaaagtttg
gagctgagatgaaaggatggaccatgtagagactgccatatccagggatc
caccccataatcagcatccaaacgctgacaccattgcatatactagcaag
atttattgaaaggacgcagatgtagctgtctcttgtgagactatgccggg
gcctagcaacacagaagtggatgctcacagtcagctaatggatggatcac
agggctcccaatgatgagctagagaagtacccatgagctaaagggatctg
caccctataggtggaacacatagactacagtacccggagcttcttgactc
tagctgctatgtatcaaagatgcctagtcgccatacttgaagagtccatt
gtacttgccaacttaattgtctgatcacggaactccagtgtccaaaacgt
gagtgctggtagatgagtagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82652017_82653309
seq2: B6Ng01-042L06.b_42_1311

seq1  GAATTCTATTGTAGCATGAGAATATAGAAAGCACAGAGAGTTCCTTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTAGCATGAGAATATAGAAAGCACAGAGAGTTCCTTTAGT  50

seq1  GAAATGGCTATAGCACTATTAAATTAGTTGATCTAGAAGGAAAATAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTATAGCACTATTAAATTAGTTGATCTAGAAGGAAAATAATTA  100

seq1  AAGAAATTAATGTCAACGTCACATTTTCAAACTCAACAATCAGTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAATGTCAACGTCACATTTTCAAACTCAACAATCAGTTCTCCT  150

seq1  ACATTATCAGGCAAACCGTTTCTGAATATATTTTCAATATTTACATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCAGGCAAACCGTTTCTGAATATATTTTCAATATTTACATGCCA  200

seq1  TTAGGATATTCTAGAGATGCAGGATCTGATATCTACTCTCTTTTCCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATATTCTAGAGATGCAGGATCTGATATCTACTCTCTTTTCCTATA  250

seq1  CTTATGTAGATGAAATATGTGGAAAATTATTTTAGTGCAAGCTGCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAGATGAAATATGTGGAAAATTATTTTAGTGCAAGCTGCTTTTG  300

seq1  AGCAAACTAAATTTCTGCCTTGGGTTTCCAGCTCCTCCAGGGGCAGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAAATTTCTGCCTTGGGTTTCCAGCTCCTCCAGGGGCAGCGAG  350

seq1  CCAATAGCCTTGTAAATTTTCATAGATGGTGGATACGTCATTGATTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGCCTTGTAAATTTTCATAGATGGTGGATACGTCATTGATTTTGA  400

seq1  ATGCACCTTACAGTTGACTTGAAATCATTGGTGCTATTTATCAAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTTACAGTTGACTTGAAATCATTGGTGCTATTTATCAAGACCTG  450

seq1  CAGATAAAAAAAATTAAACCCACTTTTTTTTATTTTTGGTGAGACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAAAAATTAAACCCACTTTTTTTTATTTTTGGTGAGACTTATT  500

seq1  TTAACTGTTTCATAATGCCTAACATAGAATGAAAGAAAAGGGGCAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTTCATAATGCCTAACATAGAATGAAAGAAAAGGGGCAAGTGA  550

seq1  GAAAAAATTGTATTTCTCACAATATCAGTAAATCCTAGCCCTTAATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTGTATTTCTCACAATATCAGTAAATCCTAGCCCTTAATATCT  600

seq1  TGTCTAACTAGATTACTTCCATTTTTAGATAAATGAAAGACACCAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACTAGATTACTTCCATTTTTAGATAAATGAAAGACACCAAAGCA  650

seq1  ACATGATAAAAACTGTGTATTGTGTAAAATATGTATTAATCCTGTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAAAAACTGTGTATTGTGTAAAATATGTATTAATCCTGTAAAAT  700

seq1  ATCTTGAATGGTTTGATATATGAAGGGACAATGCTTGTGACATTCTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAATGGTTTGATATATGAAGGGACAATGCTTGTGACATTCTAAAA  750

seq1  TCAACAACGGTC-TTATTTCATGCTCACCTAATTATTCTGACATGAGCCT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAACAACGGTCTTTATTTCATGCTCACCTAATTATTCTGACATGAGCCT  800

seq1  AACTGCTGTGTTCTGCTCCATGCTAATGAGTGTGTGGCAAACAAGATGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGTGTTCTGCTCCATGCTAATGAGTGTGTGGCAAACAAGATGAG  850

seq1  TGTCATCTGCATAGACACTCCATAACTAATTCTTAGCTCCACAGAGAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGCATAGACACTCCATAACTAATTCTTAGCTCCACAGAGAGAT  900

seq1  TAAGTGGTGAAAGTTAGCAATTACATTCCAGTGACAATGTTTTCCTCTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTGAAAGTTAGCAATTACATTCCAGTGACAATGTTTTCCTCTGC  950

seq1  AATCGATTAGTGAGTGCAATGTTCCTCTAGTAGACAGGCTATAAACAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGATTAGTGAGTGCAATGTTCCTCTAGTAGACAGGCTATAAACAGTT  1000

seq1  CCACCCATTACATTTCTTTCAGAGCCTCTGATTATCATGTCTGTTTTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCACCCATTACATTTCTTTCAGAGCCTCTGATTATCATGTCTG-TTTCTG  1049

seq1  TGTACATGTCTGTACTTCCCCTTTATCTTGAATAT-CTCTTATTTTGATA  1098
       |||||||||||||| ||||||||||| ||||||| ||||||||| || |
seq2  GGTACATGTCTGTAC-TCCCCTTTATC-TGAATATCCTCTTATTTGGAAA  1097

seq1  TATTTTCTTGATTATATCGCCAAGTCTG-TTTTCCAGATTGGCCCTACTG  1147
      ||  ||||||| ||| ||| |||||||| ||||||||| | | | |||||
seq2  TA--TTCTTGAATAT-TCGGCAAGTCTGTTTTTCCAGAATTGGCTTACTG  1144

seq1  ACAAGAACCCCAGTCTTTCCCTTGAAATTATTATCACTGAGGTTAGTGCG  1197
      |||   ||||||||||||||| ||||| |||||||||||| |||||||| 
seq2  ACA--GACCCCAGTCTTTCCC-TGAAA-TATTATCACTGA-GTTAGTGC-  1188

seq1  AGAGATTCAGTACTTGACTTTAATTTCTATAAGATTTCTCCTAATGAAAT  1247
       |||| |||| ||| |||||||||   | |||||||  |||| |||||||
seq2  -GAGAATCAG-ACTGGACTTTAAT---TCTAAGATT--TCCTTATGAAAT  1231

seq1  TAATCTTTTTGCTCAATCTCAGCAGTAAGATCTGGAGTGTAACTAC  1293
       | | || |      ||||||||| |||||||||||||| ||||||
seq2  AACTGTTGT-----CATCTCAGCA-TAAGATCTGGAGTG-AACTAC  1270