BAC Information

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BAC

Clone NameB6Ng01-043C18
Chromosome5 (Build37)
Map Location 42,496,747 - 42,630,708
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043C18.bB6Ng01-043C18.g
ACCDH869316DH869317
length1,2281,015
definitionDH869316|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C18, 5' end.DH869317|Mus musculus domesticus DNA, BAC clone: B6Ng01-043C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,629,469 - 42,630,708)(42,496,747 - 42,497,767)
sequence
gaattcatcattcccttatgcaatctaggagaacagggaacagatcggat
gagagatctgaaaggaaaacatgctgtgtgtaaaattagcctgagtcact
cccgcaagtgagaggctgaattgaaatcagggattttctatttatttttt
atttatttatttaaatttctacccatgactccttcactctgacaatgaga
tgtcgcctttggaaacgacccaggatgttgttgttgcctctatgttacag
atgtcactgttgtaagatctgtagtctagcagaaggacacggggatggca
atcagggaactatccctctagtctctgtttcccgatctatgagatgaagc
tatgtattctgctgtgagattatctcattcctggatactcttttgtgtca
ctctctcccctcatagaatttgccttccttctcagtttttcacactctaa
catcatgataaagggagaagatacattgggtgattcgtgaattgactaag
acacaggaagaagcctgcagtgctatatgcaaaactccatgtggatacat
gggaaagaatggatgagctgagatgtggttcttgcctaatctagtcattc
ccacacccatcccatccacacctcctatgaattacaatgaaacggtacac
attggtggtaagagagtaaaatatcatctcttcctactaggaccccaaat
tctgctgaggtgaaagagaaacaacgattaaccaaaactgagcaatccag
aggtgcagaactcaagatgcaatggatacaggaatcagagtccttcccca
gtcctttttgatgatagatagcatcccaaagaagacaaatctggagaaga
gagtggtaaagagaatattctagaaagttgaagcccaacacttaggtaga
agctcagttagttacttatctctagttcaaagctctaagatttgtgacct
cagcacagtcaaatgacaggagatttgggggtccttaatagtgataacaa
gtgctgattgattagtcgatggtctgcatggtgaaccaagaggagcttta
gtgtcttgtcttgcttgtcatacaaagcagtagttcattgttgttttcct
aagtaccaagggtgtactgaagggattgaaaaatctctaaggcaaagcag
catggagagtatgggtgagcttggagtatcatatggagatgtcttcataa
atctatagtaactatcataggctctgat
gaattcatggccaacactgctattttgtgtttgcttttctttcgacatga
aaagcaatatatttttacatttaccagacatttgagtttttcttttactc
agaaatgctttttgaacatcaaacatttatagttacctcattaaaaatag
aataataacatcagcaaaaccctctttgcctatccagtcccctattgatg
gacatgtagatttcttgctaattttaacctctttttcaaattgggatgaa
acaagcattaattcttgtttcttagactattctggagaatgtttccaggg
aatgtatctttaaacaaatttgctttgtgcctttgaaaatttgactgact
tttcaattattttttggcctcattgaaagtcatttatttagtgatagttt
cctgattggaatcaaagcccaagagttctttcagtggaacaattgggaca
gaggtcactatcaatttaccagcagggatagaagtttattttttaactaa
aagagaacatttattttaacttattgtaagtttaaagcatgatttttttt
ttggaaaatgaataaaccttttgtgagttttgttattttataacttgcat
taaaatttgcttgcatgtgtgtatgtgtgtatgtgtgtgtgtctgagtgt
gtgtgagagagaaagagagagaactggacttacacactcaagagaaggat
ggcaatttaaaggaaatgctctatgatcccgaatttcttccctaattctt
gacagtgatatcacgagtatatgttcagactggtttaacaaaatgctggt
ggtgtggcttaaagaacacatatttacttctttttgtattgaaattaaaa
taatttctccctttctttcatccttccaactcctctcatacttctctatt
tttcactcttaaattcattacctccttttattattgctattgttttacac
acacaggaaacacacaccctttacacacacatacagagagagagtgagcg
agcgagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42629469_42630708
seq2: B6Ng01-043C18.b_46_1273 (reverse)

seq1  ATCAGAGCCTATGTATAGTTACCTATTGAGTCTAATGAAGAC-TATCACA  49
      ||||||||||||| ||||||| ||||  ||  | |||||||| | ||   
seq2  ATCAGAGCCTATG-ATAGTTA-CTAT--AGATTTATGAAGACATCTCCAT  46

seq1  ATGATACATCCCAAGCTCTACCCATTACTCTTCATGCTGCCTTTGGCTTT  99
      |||||||   |||||||| ||||| |||||| ||||||||  || || ||
seq2  ATGATAC--TCCAAGCTC-ACCCA-TACTCTCCATGCTGC--TTTGCCTT  90

seq1  AGAGATTTATCATACCCTTCAGTAACACCCTTGGTACTTAGGATAACAAC  149
      |||||||| |||  ||||||||| ||||||||||||||||||| ||||||
seq2  AGAGATTTTTCAATCCCTTCAGT-ACACCCTTGGTACTTAGGAAAACAAC  139

seq1  AATGAACTTACTGCTTGGTATGACAGCAAAGACAAGACACTAAAGCTCCT  199
      ||||||| |||||||| ||||||||   ||||||||||||||||||||||
seq2  AATGAAC-TACTGCTTTGTATGACAAGCAAGACAAGACACTAAAGCTCCT  188

seq1  CTTGGTTCACCATGCAGA-CATCGACTAATCAATCAGCCACTTGTTATCA  248
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CTTGGTTCACCATGCAGACCATCGACTAATCAATCAG-CACTTGTTATCA  237

seq1  CTATTAAGGACCCCCAAATCTCCCTGTCATTTGACTGTGCTGAGGTCACA  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTATTAAGGACCCCCAAATCT-CCTGTCATTTGACTGTGCTGAGGTCACA  286

seq1  AATCTTAGAGCTTTGAACTAGAGATAAGTAACTAACTGAGCTTCTACCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGAGCTTTGAACTAGAGATAAGTAACTAACTGAGCTTCTACCTA  336

seq1  AGTGTTGGGCTTCAACTTTCTAGAATATTCTCTTTACCACTCTCTTCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGCTTCAACTTTCTAGAATATTCTCTTTACCACTCTCTTCTCC  386

seq1  AGATTTGTCTTCTTTGGGATGCTATCTATCATCAAAAAGGACTGGGGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCTTCTTTGGGATGCTATCTATCATCAAAAAGGACTGGGGAAG  436

seq1  GACTCTGATTCCTGTATCCATTGCATCTTGAGTTCTGCACCTCTGGATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGATTCCTGTATCCATTGCATCTTGAGTTCTGCACCTCTGGATTG  486

seq1  CTCAGTTTTGGTTAATCGTTGTTTCTCTTTCACCTCAGCAGAATTTGGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTGGTTAATCGTTGTTTCTCTTTCACCTCAGCAGAATTTGGGG  536

seq1  TCCTAGTAGGAAGAGATGATATTTTACTCTCTTACCACCAATGTGTACCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAGGAAGAGATGATATTTTACTCTCTTACCACCAATGTGTACCG  586

seq1  TTTCATTGTAATTCATAGGAGGTGTGGATGGGATGGGTGTGGGAATGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTAATTCATAGGAGGTGTGGATGGGATGGGTGTGGGAATGACT  636

seq1  AGATTAGGCAAGAACCACATCTCAGCTCATCCATTCTTTCCCATGTATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGCAAGAACCACATCTCAGCTCATCCATTCTTTCCCATGTATCC  686

seq1  ACATGGAGTTTTGCATATAGCACTGCAGGCTTCTTCCTGTGTCTTAGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGTTTTGCATATAGCACTGCAGGCTTCTTCCTGTGTCTTAGTCA  736

seq1  ATTCACGAATCACCCAATGTATCTTCTCCCTTTATCATGATGTTAGAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGAATCACCCAATGTATCTTCTCCCTTTATCATGATGTTAGAGTG  786

seq1  TGAAAAACTGAGAAGGAAGGCAAATTCTATGAGGGGAGAGAGTGACACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACTGAGAAGGAAGGCAAATTCTATGAGGGGAGAGAGTGACACAA  836

seq1  AAGAGTATCCAGGAATGAGATAATCTCACAGCAGAATACATAGCTTCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATCCAGGAATGAGATAATCTCACAGCAGAATACATAGCTTCATC  886

seq1  TCATAGATCGGGAAACAGAGACTAGAGGGATAGTTCCCTGATTGCCATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATCGGGAAACAGAGACTAGAGGGATAGTTCCCTGATTGCCATCC  936

seq1  CCGTGTCCTTCTGCTAGACTACAGATCTTACAACAGTGACATCTGTAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCCTTCTGCTAGACTACAGATCTTACAACAGTGACATCTGTAACA  986

seq1  TAGAGGCAACAACAACATCCTGGGTCGTTTCCAAAGGCGACATCTCATTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAACAACAACATCCTGGGTCGTTTCCAAAGGCGACATCTCATTG  1036

seq1  TCAGAGTGAAGGAGTCATGGGTAGAAATTTAAATAAATAAATAAAAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGAAGGAGTCATGGGTAGAAATTTAAATAAATAAATAAAAAATA  1086

seq1  AATAGAAAATCCCTGATTTCAATTCAGCCTCTCACTTGCGGGAGTGACTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATCCCTGATTTCAATTCAGCCTCTCACTTGCGGGAGTGACTC  1136

seq1  AGGCTAATTTTACACACAGCATGTTTTCCTTTCAGATCTCTCATCCGATC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATTTTACACACAGCATGTTTTCCTTTCAGATCTCTCATCCGATC  1186

seq1  TGTTCCCTGTTCTCCTAGATTGCATAAGGGAATGATGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTGTTCTCCTAGATTGCATAAGGGAATGATGAATTC  1228

seq1: chr5_42496747_42497767
seq2: B6Ng01-043C18.g_65_1079

seq1  GAATTCATGGCCAACACTGCTATTTTGTGTTTGCTTTTCTTTCGACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCCAACACTGCTATTTTGTGTTTGCTTTTCTTTCGACATGA  50

seq1  AAAGCAATATATTTTTACATTTACCAGACATTTGAGTTTTTCTTTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATATATTTTTACATTTACCAGACATTTGAGTTTTTCTTTTACTC  100

seq1  AGAAATGCTTTTTGAACATCAAACATTTATAGTTACCTCATTAAAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCTTTTTGAACATCAAACATTTATAGTTACCTCATTAAAAATAG  150

seq1  AATAATAACATCAGCAAAACCCTCTTTGCCTATCCAGTCCCCTATTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACATCAGCAAAACCCTCTTTGCCTATCCAGTCCCCTATTGATG  200

seq1  GACATGTAGATTTCTTGCTAATTTTAACCTCTTTTTCAAATTGGGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAGATTTCTTGCTAATTTTAACCTCTTTTTCAAATTGGGATGAA  250

seq1  ACAAGCATTAATTCTTGTTTCTTAGACTATTCTGGAGAATGTTTCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATTAATTCTTGTTTCTTAGACTATTCTGGAGAATGTTTCCAGGG  300

seq1  AATGTATCTTTAAACAAATTTGCTTTGTGCCTTTGAAAATTTGACTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTTTAAACAAATTTGCTTTGTGCCTTTGAAAATTTGACTGACT  350

seq1  TTTCAATTATTTTTTGGCCTCATTGAAAGTCATTTATTTAGTGATAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTATTTTTTGGCCTCATTGAAAGTCATTTATTTAGTGATAGTTT  400

seq1  CCTGATTGGAATCAAAGCCCAAGAGTTCTTTCAGTGGAACAATTGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGGAATCAAAGCCCAAGAGTTCTTTCAGTGGAACAATTGGGACA  450

seq1  GAGGTCACTATCAATTTACCAGCAGGGATAGAAGTTTATTTTTTAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTATCAATTTACCAGCAGGGATAGAAGTTTATTTTTTAACTAA  500

seq1  AAGAGAACATTTATTTTAACTTATTGTAAGTTTAAAGCATGATTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACATTTATTTTAACTTATTGTAAGTTTAAAGCATGATTTTTTTT  550

seq1  TTGGAAAATGAATAAACCTTTTGTGAGTTTTGTTATTTTATAACTTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATGAATAAACCTTTTGTGAGTTTTGTTATTTTATAACTTGCAT  600

seq1  TAAAATTTGCTTGCATGTGTGTATGTGTGTATGTGTGTGTGTCTGAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGCTTGCATGTGTGTATGTGTGTATGTGTGTGTGTCTGAGTGT  650

seq1  GTGTGAGAGAGAAAGAGAGAGAACTGGACTTACACACTCAAGAGAAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAGAGAAAGAGAGAGAACTGGACTTACACACTCAAGAGAAGGAT  700

seq1  GGCAATTTAAAGGAAATGCTCTATGATCCCGAATTTCTTCCCTAATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTAAAGGAAATGCTCTATGATCCCGAATTTCTTCCCTAATTCTT  750

seq1  GACAGTGATATCACGAGTATATGTTCAGACTGGTTTAACAAAATGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGATATCACGAGTATATGTTCAGACTGGTTTAACAAAATGCTGGT  800

seq1  GGTGTGGCTTAAAGAACACATATTTACTTCTTTTTGTATTGAAATTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCTTAAAGAACACATATTTACTTCTTTTTGTATTGAAATTAAAA  850

seq1  TAATTTCTCCCTTTCTTTCATCCTTCCAACTCCTCTCATACTTCTCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCCCTTTCTTTCATCCTTCCAACTCCTCTCATACTTCTCTATT  900

seq1  TTTCACTCTTAAATTCATTACCTCCTTTTTATTAATTGCTATTGTTTTTA  950
      ||||||||||||||||||||||||| ||||||| |||||||||| |||||
seq2  TTTCACTCTTAAATTCATTACCTCC-TTTTATT-ATTGCTATTG-TTTTA  947

seq1  CACACACAGGAAACACACACACACATATACACACACATACAGAGAGAGAG  1000
      ||||||||||||||||||||   | | |||||||||||||||||||||||
seq2  CACACACAGGAAACACACAC---CCTTTACACACACATACAGAGAGAGAG  994

seq1  TGAGCGAGCGAGAGAGAGAGA  1021
      |||||||||||||||||||||
seq2  TGAGCGAGCGAGAGAGAGAGA  1015