BAC Information

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BAC

Clone NameB6Ng01-043I16
Chromosome5 (Build37)
Map Location 83,531,330 - 83,532,522
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I16.bB6Ng01-043I16.g
ACCDH869571DH869572
length1,1781,166
definitionDH869571|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I16, 5' end.DH869572|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagttaaaaacaaaaattttaaattcaatttttttgtttttgtt
tttgtttttcaagacagggtttctctgtgtagccctggctgtcctggaac
tcactttgtagaccaggttggcctcaaactcagaaatcctcctgcctctg
cctcccaagcgctgggattaaaggcatgtgccacaatgcccggctctatt
tttatttataataacttacacaaaaccaaaattattcagaagacttgatc
caaataaagggaaaaattcgtctgtgaagcataagcattgtaagtatata
tgttccaaacactggagctcctaattttataaaattaactctcagaagaa
tgaaaacttagtagatcatgatacaacaatagacctttgagataaattaa
attaaaccagatcaaatagaacattcaattaagcagatacaagatgaatg
tacctaccaacaagtcaagaaatcttatcaaaaacagagcacattggact
atggagattgcacagttggtaaagagcttgactcataagcagacttgaat
tgagtctggagaaattgaaagatattgagcattattgcagacacttttaa
tccaaacactggagaattggagacaagcttttccttagccttgatgacca
gcaagtcgagccacagttaactaacacagatcagtgagagaatctatcaa
aataaaacagagttaggtagctaaagtatttaaactgagattgctctctg
ctttctgcatttagaagtatatataatcacttatactgtcactcacttgc
acaatacacaggcatataaagaggtacacacaaaataaataaaaattata
gagcacaatctagtccaagatataagtcttaataaataaaacaggatcaa
aatcatttcttgcatttcatcaacttacagtgtcattcaaatttaaataa
atagcaaggaaaattagaaagtatacaagccatgtagatagaacagtgta
caattaaagactactgtgtcgctgcagaaaaaaaaaatatttttaaatgt
aaacccaaatgaaagcacaatcttgcctaaaattctggataattctagtg
ccagtacccaagagaagttgcagcatcaatgctgcatttaaaagaaaaaa
taaaaagtctgaatgacagaattcttaa
gaattctgtacctaaaccatctggccttggacttttttttgtttgtttgt
ttgttttttgttttttgttttttgttttttgtttttttttaatgttgaga
ggactttaatgattgttttacttccttgggagttatgggacagtttatac
agtttatgtgcttttgatttaactttggtacttggtatctatctagacaa
tgaacaatttcattagattttccaggtttgttgagtataggcttttgtaa
taagatttattttattttattttaattaggtattttcttcatttacattt
ccaatgctaccccaaaagtcccccatgccctctccccccagttccctaac
ccccactcctgcttcttgttcctggcgttcccctgtactgaggcatataa
agtttgcaagatcaaagggcctctctttccactgatgcctgaataggcca
tcttctgatacatatgcagctagagacaagagctccggagtactggttag
ttaatattgttgttctacctatagggttgcagacccctttaactccttgg
gtagttgtgttatgtgtccctctttcatttctgattttgttgatttggat
actgtgtctattccctttagttagtttggctaagaatttgtctgccttgt
tgattttctcaaggaatcatctcttgaggttttttttttattctttgcat
ccttctctttgtttctaattggttgatttcagccctgtgtttggctattt
tctgccatctactctgggtatgtttgcttcatttttttctagagctttca
agtgtgcttttaaattgctctcgataacatctctcaaatttctttgtgga
agcacatactactatgaattttcttcttaacactgcttccattgtacatc
attagtttggcaggctatgtcatcaaatttattgaattctatatgtcttt
aatttctttattcttctttgaccaagtatcattgaatagagagttgttca
atctcatgagcagtgggtttactgttgtcttgttttattcaagtacagct
ttagacatgaattcatagaatgggagtgtggttagttcaaagtcacaatg
ggagagacctgagataccctcagagccaatcagcctagtgagagacggtc
ccacccattgaattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83531330_83532522
seq2: B6Ng01-043I16.b_46_1223

seq1  GAATTCAAGTTAAAAACAAAAATTTTAAATTCAATTTTTTTGTTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTAAAAACAAAAATTTTAAATTCAATTTTTTTGTTTTTGTT  50

seq1  TTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  100

seq1  TCACTTTGTAGACCAGGTTGGCCTCAAACTCAGAAATCCTCCTGCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGTTGGCCTCAAACTCAGAAATCCTCCTGCCTCTG  150

seq1  CCTCCCAAGCGCTGGGATTAAAGGCATGTGCCACAATGCCCGGCTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGCGCTGGGATTAAAGGCATGTGCCACAATGCCCGGCTCTATT  200

seq1  TTTATTTATAATAACTTACACAAAACCAAAATTATTCAGAAGACTTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATAATAACTTACACAAAACCAAAATTATTCAGAAGACTTGATC  250

seq1  CAAATAAAGGGAAAAATTCGTCTGTGAAGCATAAGCATTGTAAGTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGGGAAAAATTCGTCTGTGAAGCATAAGCATTGTAAGTATATA  300

seq1  TGTTCCAAACACTGGAGCTCCTAATTTTATAAAATTAACTCTCAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAACACTGGAGCTCCTAATTTTATAAAATTAACTCTCAGAAGAA  350

seq1  TGAAAACTTAGTAGATCATGATACAACAATAGACCTTTGAGATAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTTAGTAGATCATGATACAACAATAGACCTTTGAGATAAATTAA  400

seq1  ATTAAACCAGATCAAATAGAACATTCAATTAAGCAGATACAAGATGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCAGATCAAATAGAACATTCAATTAAGCAGATACAAGATGAATG  450

seq1  TACCTACCAACAAGTCAAGAAATCTTATCAAAAACAGAGCACATTGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCAACAAGTCAAGAAATCTTATCAAAAACAGAGCACATTGGACT  500

seq1  ATGGAGATTGCACAGTTGGTAAAGAGCTTGACTCATAAGCAGACTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATTGCACAGTTGGTAAAGAGCTTGACTCATAAGCAGACTTGAAT  550

seq1  TGAGTCTGGAGAAATTGAAAGATATTGAGCATTATTGCAGACACTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGGAGAAATTGAAAGATATTGAGCATTATTGCAGACACTTTTAA  600

seq1  TCCAAACACTGGAGAATTGGAGACAAGCTTTTCCTTAGCCTTGATGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACACTGGAGAATTGGAGACAAGCTTTTCCTTAGCCTTGATGACCA  650

seq1  GCAAGTCGAGCCACAGTTAACTAACACAGATCAGTGAGAGAATCTATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCGAGCCACAGTTAACTAACACAGATCAGTGAGAGAATCTATCAA  700

seq1  AATAAAACAGAGTTAGGTAGCTAAAGTATTTAAACTGAGATTGCTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGAGTTAGGTAGCTAAAGTATTTAAACTGAGATTGCTCTCTG  750

seq1  CTTTCTGCATTTAGAAGTATATATAATCACTTATACTGTCACTCACTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATTTAGAAGTATATATAATCACTTATACTGTCACTCACTTGC  800

seq1  ACAATACACAGGCATATAAAGAGGTACACACAAAATAAATAAAAATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACACAGGCATATAAAGAGGTACACACAAAATAAATAAAAATTATA  850

seq1  GAGCACAATCTAGTCCAAGATATAAGTCTTAATAAATAAAACAGGATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAATCTAGTCCAAGATATAAGTCTTAATAAATAAAACAGGATCAA  900

seq1  AATCATTTCTTGCATTTCATCAACTTACAGTGTCATTCAAATTTAAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCTTGCATTTCATCAACTTACAGTGTCATTCAAATTTAAATAA  950

seq1  ATAGCAAGGAAAATTAGAAAGTATACAAGCCATGTAGATAGAACAGTGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGAAAATTAGAAAGTATACAAGCCATGTAGATAGAACAGTGTA  1000

seq1  CAATTAAAGACTACTGTGTCGCTGCAG-AAAAAAAAATA-TTTTAAATGT  1048
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CAATTAAAGACTACTGTGTCGCTGCAGAAAAAAAAAATATTTTTAAATGT  1050

seq1  AAACCCAAATGAAAGCAC-ATCTTGCCTAAAATTCTGGAT-ATCCTAGTG  1096
      |||||||||||||||||| ||||||||||||||||||||| || ||||||
seq2  AAACCCAAATGAAAGCACAATCTTGCCTAAAATTCTGGATAATTCTAGTG  1100

seq1  CCAGTACACAAGAGGAAAGTTTGCAGCATTCATTGCTTGCATTAAAAAAA  1146
      ||||||| ||||||  ||| |||||||| ||| ||| ||||||       
seq2  CCAGTACCCAAGAG--AAG-TTGCAGCA-TCAATGC-TGCATT-------  1138

seq1  AAAAAAAAAAAAAAAAAAAAAAAAGTCTGAGTGACAGAAATTCTTAA  1193
             |||| |||||| ||||||||||| |||||| |||||||||
seq2  ------TAAAAGAAAAAATAAAAAGTCTGAATGACAG-AATTCTTAA  1178